BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0041.p (200 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp|P94300|PAAD_BACPF Probable aromatic acid decarboxylase >gi|18... 259 2e-68 ref|NP_242517.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [B... 245 5e-64 ref|NP_951499.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, p... 217 2e-55 ref|ZP_00080297.1| COG0163: 3-polyprenyl-4-hydroxybenzoate decar... 214 8e-55 ref|NP_923475.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [G... 214 1e-54 >sp|P94300|PAAD_BACPF Probable aromatic acid decarboxylase gb|AAB41845.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Length = 200 Score = 259 bits (663), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 121/200 (60%), Positives = 153/200 (76%) Query: 1 MNELKPKNYVVGITGASGGIYGVRLARTLLALGHSVHLVVSNAGWRVFKEELGFAASDRE 60 M+E K VGITGASGG+YGVRL + LL + VHLV++ A W+VFKEEL +DR+ Sbjct: 1 MSERIEKIMTVGITGASGGMYGVRLTQELLRQEYKVHLVLTEAAWQVFKEELLLDTTDRQ 60 Query: 61 GFLNEQFGSYPGSLHYHPVADIGASIASGSFRTEAMIIMPCSMGTLSAVAHGSSDNLMTR 120 ++E FG PG LH H + D A IASGS+R+ M+I+PCSMGTLS +AHG+S NL+ R Sbjct: 61 KVIHELFGDLPGELHTHDLHDYAAPIASGSYRSAGMVIIPCSMGTLSGMAHGASGNLLER 120 Query: 121 AADVMLKEGRPLVLVPRETPLHAIHLENMLKLSRLGVKMIPAMPAFYYGPTTVDDLVDFM 180 ADVMLKE R LV+VPRETPLH IHLENMLKLS++G ++PAMP +Y+ P T+DDL++F+ Sbjct: 121 TADVMLKEKRKLVIVPRETPLHDIHLENMLKLSKMGATILPAMPGYYHLPKTIDDLINFL 180 Query: 181 VGKVLDSLNIEHSLFRRWGE 200 VGK LDSL +EH+LF RWGE Sbjct: 181 VGKALDSLGVEHTLFTRWGE 200 >ref|NP_242517.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Bacillus halodurans] sp|Q9KCC2|PAAD_BACHD Probable aromatic acid decarboxylase pir||C83856 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BH1651 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05370.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Bacillus halodurans] Length = 206 Score = 245 bits (625), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 113/192 (58%), Positives = 143/192 (74%) Query: 9 YVVGITGASGGIYGVRLARTLLALGHSVHLVVSNAGWRVFKEELGFAASDREGFLNEQFG 68 Y VGITGASG YG+RL + + G+ VHLV++ AGW+VF+EEL DR+ ++E F Sbjct: 8 YTVGITGASGAQYGIRLVQEMKKKGYKVHLVITEAGWQVFREELLIQTDDRKMVIDELFA 67 Query: 69 SYPGSLHYHPVADIGASIASGSFRTEAMIIMPCSMGTLSAVAHGSSDNLMTRAADVMLKE 128 + G + +H + D A IASGS++ MII+PCSMGTLS +A G+S NL+ R ADVMLKE Sbjct: 68 AGDGEVSFHQLDDYTAPIASGSYQNRGMIIIPCSMGTLSGIAQGASGNLLERTADVMLKE 127 Query: 129 GRPLVLVPRETPLHAIHLENMLKLSRLGVKMIPAMPAFYYGPTTVDDLVDFMVGKVLDSL 188 R LV+VPRETPL+ IHLENMLKLS++GV ++PAMP FY P T+DDL+DF+VGK LD L Sbjct: 128 KRRLVIVPRETPLNQIHLENMLKLSKMGVTILPAMPGFYQLPKTMDDLIDFVVGKALDQL 187 Query: 189 NIEHSLFRRWGE 200 IEH LF RWGE Sbjct: 188 GIEHELFTRWGE 199 >ref|NP_951499.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative [Geobacter sulfurreducens PCA] gb|AAR33772.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative [Geobacter sulfurreducens PCA] Length = 207 Score = 217 bits (552), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/198 (56%), Positives = 138/198 (69%), Gaps = 4/198 (2%) Query: 7 KNYVVGITGASGGIYGVRLARTLLALGHSVHLVVSNAGWRVFKEELGFAASDRE----GF 62 ++ V+ ITGASG +YG+RL LLA G + L++S G+ V +EE G D G Sbjct: 4 RHVVLAITGASGAVYGLRLGCELLAAGCRLTLLISRPGFTVIREECGLDWGDWPHETLGA 63 Query: 63 LNEQFGSYPGSLHYHPVADIGASIASGSFRTEAMIIMPCSMGTLSAVAHGSSDNLMTRAA 122 L E F PG L Y+ D+ A +ASGS +AM++ PCSMG+L+ +A G S L R A Sbjct: 64 LEEYFRPAPGMLAYYTEDDLMAPVASGSRAPDAMVVCPCSMGSLARIAAGLSSTLTERCA 123 Query: 123 DVMLKEGRPLVLVPRETPLHAIHLENMLKLSRLGVKMIPAMPAFYYGPTTVDDLVDFMVG 182 DV LKEGRPLVLVPRETPL AIHLENMLKL+RLGV+++PAMP FY+ P TVDDLV F+VG Sbjct: 124 DVTLKEGRPLVLVPRETPLSAIHLENMLKLARLGVRIVPAMPGFYHEPRTVDDLVGFVVG 183 Query: 183 KVLDSLNIEHSLFRRWGE 200 KVLD+L I H LF RWG+ Sbjct: 184 KVLDALQIPHELFTRWGD 201 >ref|ZP_00080297.1| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Geobacter metallireducens] Length = 206 Score = 214 bits (545), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 109/196 (55%), Positives = 136/196 (69%), Gaps = 4/196 (2%) Query: 8 NYVVGITGASGGIYGVRLARTLLALGHSVHLVVSNAGWRVFKEE----LGFAASDREGFL 63 +VGITGASG +YG+RL LL G V + S AG V +EE L D L Sbjct: 4 TVLVGITGASGSVYGLRLCEELLKAGKRVVVTASGAGIGVVREETNLDLSAGEEDAVARL 63 Query: 64 NEQFGSYPGSLHYHPVADIGASIASGSFRTEAMIIMPCSMGTLSAVAHGSSDNLMTRAAD 123 E FG+ P L ++ ++ A ASGS +AM++ PCSMGTL+ +A G S L+ R AD Sbjct: 64 RELFGASPEQLSFYGADNLFAPPASGSAAPDAMVVAPCSMGTLARIATGLSSTLLERCAD 123 Query: 124 VMLKEGRPLVLVPRETPLHAIHLENMLKLSRLGVKMIPAMPAFYYGPTTVDDLVDFMVGK 183 VM+KEGRPLV+VPRETPL AIHLENMLKL+RLGV+++PAMPAFY+ P T+DDLVDF+VGK Sbjct: 124 VMVKEGRPLVIVPRETPLSAIHLENMLKLARLGVRVVPAMPAFYHRPRTLDDLVDFVVGK 183 Query: 184 VLDSLNIEHSLFRRWG 199 VLD+L + H LF RWG Sbjct: 184 VLDTLGVHHELFTRWG 199 >ref|NP_923475.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Gloeobacter violaceus] dbj|BAC88470.1| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Gloeobacter violaceus PCC 7421] Length = 208 Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 138/196 (70%), Gaps = 4/196 (2%) Query: 7 KNYVVGITGASGGIYGVRLARTLLALGHSVHLVVSNAGWRVFKEELGFA----ASDREGF 62 + V+G+ GASG IY VR R LLA GH+V LV S A + V++EE+G A +++E F Sbjct: 9 RPIVLGVAGASGLIYAVRTVRFLLAAGHAVDLVASRASFMVWREEMGTAMPVEPAEQERF 68 Query: 63 LNEQFGSYPGSLHYHPVADIGASIASGSFRTEAMIIMPCSMGTLSAVAHGSSDNLMTRAA 122 EQ G G L H A++ ASIASGS+RT M+++PCSM T+ +A G S +L+ RAA Sbjct: 69 WREQSGESGGKLRCHAFANLAASIASGSYRTRGMLVIPCSMSTVGKLAAGLSSDLLERAA 128 Query: 123 DVMLKEGRPLVLVPRETPLHAIHLENMLKLSRLGVKMIPAMPAFYYGPTTVDDLVDFMVG 182 DV LKEGRPLVLVPRETP IHL N+ L+ G +++PA+PA+Y P T++DLVDF++G Sbjct: 129 DVQLKEGRPLVLVPRETPFSLIHLRNLTALAEAGARIVPAIPAWYQQPKTIEDLVDFVIG 188 Query: 183 KVLDSLNIEHSLFRRW 198 + LD L+I+HSLF RW Sbjct: 189 RALDQLDIDHSLFERW 204 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 292,993,510 Number of extensions: 11205806 Number of successful extensions: 28707 Number of sequences better than 1.0e-05: 194 Number of HSP's gapped: 28559 Number of HSP's successfully gapped: 194 Length of query: 200 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 81 Effective length of database: 434,140,797 Effective search space: 35165404557 Effective search space used: 35165404557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 123 (52.0 bits)