BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0040.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAB41846.1| unknown 202 1e-50 ref|NP_242518.1| BH1652~unknown conserved protein [Bacillus halo... 201 2e-50 ref|NP_953066.1| conserved hypothetical protein [Geobacter sulfu... 140 3e-32 ref|NP_628670.1| conserved hypothetical protein [Streptomyces co... 137 3e-31 ref|ZP_00080162.1| COG1427: Predicted periplasmic solute-binding... 135 9e-31 >gb|AAB41846.1| unknown Length = 281 Score = 202 bits (513), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/273 (38%), Positives = 162/273 (59%), Gaps = 4/273 (1%) Query: 8 VIGKISYTNSWPVFHNFHTSSL-SFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAX 66 VIG+ISYTN P++++ L S ++ +VP+ LN+ M++G + VG +SSFAYA Sbjct: 4 VIGEISYTNILPLYYDLDREYLESQGCKIKPQVPSELNREMSAGRVDVGGISSFAYAENK 63 Query: 67 XXXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGK 126 G V SI +FS+VP+ Q+++ +A+T+TSATS +LLKI++ + Sbjct: 64 NHFTLFPNLSVSALGKVGSIFLFSKVPIHQLSAKKVALTSTSATSTHLLKIILERFYEQS 123 Query: 127 PEYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVT-DLGGLWKEWTGFGMTFAVW 185 P Y + P++ +M++ DACLLIGD AI AS+ + + DLG LW + TG MTFAV Sbjct: 124 PRYTTMKPNIHKMLSDHDACLLIGDEAIVASFNKREELYQYDLGELWYKHTGMPMTFAVL 183 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGR-QNLAPIIREACSAIGGSAAYWDTYFRNLCY 244 A+ EA + +F+ESK+R + P+I++ GG ++W+ YF NL Y Sbjct: 184 AIRNEAIDHNSHLAGTLYRSFLESKKRSEMSHYQPMIKDILKTYGGDKSFWEDYFNNLIY 243 Query: 245 DFGERQQEGLNLYFRYAYELGLLQREVK-MEMW 276 DF R+Q GL LY++ AY+LG L V+ + +W Sbjct: 244 DFSNREQRGLMLYYQLAYDLGYLSEPVESIHVW 276 >ref|NP_242518.1| BH1652~unknown conserved protein [Bacillus halodurans] pir||D83856 hypothetical protein BH1652 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05371.1| BH1652~unknown conserved protein [Bacillus halodurans] Length = 287 Score = 201 bits (510), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/272 (39%), Positives = 159/272 (58%), Gaps = 4/272 (1%) Query: 9 IGKISYTNSWPVFHNFHTSSL-SFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXX 67 +G+I YTN++P F+ + L + + PA LN+ M +G I VG +SSFAYA Sbjct: 5 VGEIKYTNAFPFFYYVDRNKLLEKDCHFLIQTPATLNREMKAGRIQVGPISSFAYAENVD 64 Query: 68 XXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKP 127 +GPV SI ++++ PL ++ IA+T TSATSV+LLKIL+ + + Sbjct: 65 EFVLMPNLSVSANGPVGSIFLYTKRPLEELEGSRIALTTTSATSVHLLKILLKQYVGVNV 124 Query: 128 EYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVT-DLGGLWKEWTGFGMTFAVWA 186 Y P D+MM D CLLIGD AI SW+++ DLG LWKE+TG MTFAV+A Sbjct: 125 TYDEMDPSFDEMMQDHDGCLLIGDEAIVTSWREEVETYRYDLGELWKEYTGTSMTFAVFA 184 Query: 187 VNREAARMRPEAVAEIADAFVESKRRGR-QNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 V ++A + + E+ AFV SK + R + A +I +GG+ A+W+ YF NL YD Sbjct: 185 VRKDAIARQRAILEELYTAFVLSKEKNRKEQYASMIGHIQKGMGGTTAFWNHYFSNLVYD 244 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVK-MEMW 276 F +QQ+GL L++ AYE G L + ++ +++W Sbjct: 245 FHTQQQKGLLLFYEKAYEEGFLPKPIESIKIW 276 >ref|NP_953066.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|AAR35393.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length = 273 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 89/272 (32%), Positives = 128/272 (47%) Query: 6 PTVIGKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAA 65 P +G I Y N P+F S +V+ VPA LN+ + G I V SS YA Sbjct: 2 PLTLGHIVYANCTPIFTALRDLGHSPDYRIVTGVPAQLNRLLAHGEIDVCPSSSIEYATH 61 Query: 66 XXXXXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNG 125 GPVKS+++FSRVP+ Q+ TIA+T S TSVNLLKI++ Sbjct: 62 PDRYVILPDLSISAVGPVKSVMLFSRVPIEQLDGATIAMTTESDTSVNLLKIILGLFHRF 121 Query: 126 KPEYISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVTDLGGLWKEWTGFGMTFAVW 185 + L + + LLIGD A+R + V DLG LW +TG FA+W Sbjct: 122 TNRFQRTDLPLTEALEAHPGLLLIGDKALRGALAGTAPHVYDLGELWYRFTGLPFVFALW 181 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 V REAA + + V + +++KR ++ I EA Y+R + YD Sbjct: 182 LVRREAAESQRDKVVRLGADLLKAKRISYESYPAIAAEAPERNWIGEEQLVDYWRTISYD 241 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVKMEMWS 277 +GL L+FR+A ELG + ++ ++S Sbjct: 242 LTPAHLDGLRLFFRHAAELGAIASAPEIRLFS 273 >ref|NP_628670.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] emb|CAB77297.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)] Length = 282 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 129/270 (47%), Gaps = 3/270 (1%) Query: 9 IGKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXXX 68 +G I + N P++ + E+ + P L++ + G + +G ++ + Sbjct: 10 VGHIQFLNCLPLYWGLARTGTLLDFELTKDTPEKLSEQLVRGDLDIGPVTLVEFLKNADD 69 Query: 69 XXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKPE 128 DGPV S ++ S+VPL ++ +A+ +TS TSV L ++L+++ +P+ Sbjct: 70 LVAFPDIAVGCDGPVMSCVIVSQVPLDRLDGARVALGSTSRTSVRLAQLLLSERFGVQPD 129 Query: 129 YISAAPDLDQMMAGADACLLIGDHAIRASWQD---QGYIVTDLGGLWKEWTGFGMTFAVW 185 Y + PDL MM ADA +LIGD A+RA+ D G V DLG LWKEWTG FAVW Sbjct: 130 YYTCPPDLSLMMQEADAAVLIGDAALRANMIDGPRYGLDVHDLGALWKEWTGLPFVFAVW 189 Query: 186 AVNREAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYD 245 A R+ A P ++ +AF+ S+ + + + +A YF L + Sbjct: 190 AARRDYAEREPVITRKVHEAFLASRNLSLEEVEKVAEQAARWEAFDEDTLAKYFTTLDFR 249 Query: 246 FGERQQEGLNLYFRYAYELGLLQREVKMEM 275 FG Q E + + R +VK+E+ Sbjct: 250 FGAPQLEAVTEFARRVGPTTGFPADVKVEL 279 >ref|ZP_00080162.1| COG1427: Predicted periplasmic solute-binding protein [Geobacter metallireducens] ref|ZP_00080164.1| COG1427: Predicted periplasmic solute-binding protein [Geobacter metallireducens] Length = 278 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/271 (31%), Positives = 125/271 (46%) Query: 9 IGKISYTNSWPVFHNFHTSSLSFPAEMVSEVPAVLNQGMTSGSIHVGALSSFAYAAAXXX 68 IG I Y+N P+F S V VPA LN+ + G I V SS Y Sbjct: 5 IGHIEYSNCTPIFTALQRSMDCSGYSFVRGVPAHLNRLLAMGEIDVCPSSSIEYGKYPDR 64 Query: 69 XXXXXXXXXXXDGPVKSILMFSRVPLAQVASGTIAVTNTSATSVNLLKILMAKALNGKPE 128 GPVKS+L+FSRVPL ++ I +T S TSVNLL+I++ Sbjct: 65 YLVLPDLSISAVGPVKSVLLFSRVPLERLDGAVIGMTTESDTSVNLLRIILTTFQGFTNS 124 Query: 129 YISAAPDLDQMMAGADACLLIGDHAIRASWQDQGYIVTDLGGLWKEWTGFGMTFAVWAVN 188 + L + + A LLIGD A++ + GY + DLG LW TG FA+W + Sbjct: 125 FERTPLPLAEALDSYPALLLIGDRALKGALTGGGYHIYDLGDLWYRATGLPFVFALWLLR 184 Query: 189 REAARMRPEAVAEIADAFVESKRRGRQNLAPIIREACSAIGGSAAYWDTYFRNLCYDFGE 248 REAA +P VA +A +KR + I +A +A Y+R + YD Sbjct: 185 REAAENKPHEVARLAVDVARAKRIAYDSYPEIAAQAPEREWIDSAVLVDYWRTISYDLTP 244 Query: 249 RQQEGLNLYFRYAYELGLLQREVKMEMWSQN 279 +G+ L++ YA LG+L + ++ ++ Sbjct: 245 AHLKGVRLFYNYAASLGVLPAAPDVRLYGES 275 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.132 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 392,811,586 Number of extensions: 14498682 Number of successful extensions: 40479 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 40454 Number of HSP's successfully gapped: 17 Length of query: 286 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 162 Effective length of database: 420,565,302 Effective search space: 68131578924 Effective search space used: 68131578924 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)