BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0256.0036.p
         (89 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242521.1| chemotaxis protein methyltransferase [Bacillus ...   124   8e-28
ref|NP_831410.1| Chemotaxis protein methyltransferase [Bacillus ...   114   6e-25
ref|NP_655540.1| MeTrc, Methyltransferase, chemotaxis proteins [...   114   8e-25
ref|NP_844111.1| chemotaxis protein methyltransferase CheR [Baci...   114   1e-24
ref|NP_692707.1| methyl-accepting chemotaxis proteins methyltran...   112   2e-24

>ref|NP_242521.1| chemotaxis protein methyltransferase [Bacillus halodurans]
 sp|Q9KCB8|CHER_BACHD Chemotaxis protein methyltransferase
 pir||G83856 chemotaxis protein methyltransferase cheR [imported] - Bacillus
           halodurans (strain C-125)
 dbj|BAB05374.1| chemotaxis protein methyltransferase [Bacillus halodurans]
          Length = 257

 Score =  124 bits (310), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/85 (65%), Positives = 69/85 (81%)

Query: 4   VSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGGYLF 63
           VS  LK+ + F++ NLL D+F+   DLI+CRNV+IYFTEEAK +LYHKFS +LRPGG LF
Sbjct: 172 VSNELKQAVTFKQHNLLADRFERDCDLIVCRNVLIYFTEEAKRELYHKFSEALRPGGVLF 231

Query: 64  VGSTEQIFTPAQYGFESTETFFYRK 88
           VGSTEQIF  ++YG E+ ETFFYRK
Sbjct: 232 VGSTEQIFEASKYGLETNETFFYRK 256


>ref|NP_831410.1| Chemotaxis protein methyltransferase [Bacillus cereus ATCC 14579]
 gb|AAP08611.1| Chemotaxis protein methyltransferase [Bacillus cereus ATCC 14579]
          Length = 265

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/88 (57%), Positives = 67/88 (76%)

Query: 1   VFKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           ++ + + +K+N+ F++ +LL+  FD  +DLIICRNVMIYFTEEA+ KLY KFS SLR GG
Sbjct: 177 LYSLHQNIKQNVSFKQHDLLMQSFDTNYDLIICRNVMIYFTEEARVKLYEKFSRSLRKGG 236

Query: 61  YLFVGSTEQIFTPAQYGFESTETFFYRK 88
            LFVGSTEQI TP +Y  +  +TFFY K
Sbjct: 237 VLFVGSTEQILTPERYNLQRFDTFFYEK 264


>ref|NP_655540.1| MeTrc, Methyltransferase, chemotaxis proteins [Bacillus anthracis
           A2012]
          Length = 265

 Score =  114 bits (284), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 67/88 (76%)

Query: 1   VFKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           ++ + + +K+N+ F++ +LL+  FD  +DLIICRNVMIYFTEEA+ KLY KFS +LR GG
Sbjct: 177 IYSLHQNIKQNVTFKQHDLLMQSFDTNYDLIICRNVMIYFTEEARVKLYEKFSRALRKGG 236

Query: 61  YLFVGSTEQIFTPAQYGFESTETFFYRK 88
            LFVGSTEQI TP +Y  +  +TFFY K
Sbjct: 237 VLFVGSTEQILTPERYNLQRFDTFFYEK 264


>ref|NP_844111.1| chemotaxis protein methyltransferase CheR [Bacillus anthracis str.
           Ames]
 gb|AAP25597.1| chemotaxis protein methyltransferase CheR [Bacillus anthracis str.
           Ames]
          Length = 260

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 67/88 (76%)

Query: 1   VFKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           ++ + + +K+N+ F++ +LL+  FD  +DLIICRNVMIYFTEEA+ KLY KFS +LR GG
Sbjct: 172 IYSLHQNIKQNVTFKQHDLLMQSFDTNYDLIICRNVMIYFTEEARVKLYEKFSRALRKGG 231

Query: 61  YLFVGSTEQIFTPAQYGFESTETFFYRK 88
            LFVGSTEQI TP +Y  +  +TFFY K
Sbjct: 232 VLFVGSTEQILTPERYNLQRFDTFFYEK 259


>ref|NP_692707.1| methyl-accepting chemotaxis proteins methyltransferase
           [Oceanobacillus iheyensis HTE831]
 dbj|BAC13742.1| methyl-accepting chemotaxis proteins (MCP)methyltransferase
           [Oceanobacillus iheyensis HTE831]
          Length = 261

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 67/89 (75%)

Query: 1   VFKVSEGLKKNIDFRKQNLLLDKFDEGFDLIICRNVMIYFTEEAKNKLYHKFSASLRPGG 60
           ++ ++  LK++I F++ NLL D + +  DLI+CRNV+IYFT++AKN +Y  FS SL   G
Sbjct: 168 LYSINSKLKQHITFKRHNLLADPYPQNMDLIVCRNVLIYFTDKAKNSIYQGFSDSLSANG 227

Query: 61  YLFVGSTEQIFTPAQYGFESTETFFYRKK 89
            LFVGSTEQIFTP QY FE  ETFFY+KK
Sbjct: 228 ILFVGSTEQIFTPQQYDFELEETFFYKKK 256


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.324    0.142    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 136,063,786
Number of extensions: 5029922
Number of successful extensions: 15055
Number of sequences better than 1.0e-05: 139
Number of HSP's gapped: 15044
Number of HSP's successfully gapped: 139
Length of query: 89
Length of database: 757,237,578
Length adjustment: 58
Effective length of query: 31
Effective length of database: 599,761,836
Effective search space: 18592616916
Effective search space used: 18592616916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 120 (50.8 bits)