BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0013.p (164 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_831301.1| Menaquinol-cytochrome c reductase iron-sulfur s... 183 1e-45 ref|NP_655423.1| Rieske, Rieske [2Fe-2S] domain [Bacillus anthra... 183 1e-45 ref|ZP_00182099.1| hypothetical protein Exigu260701 [Exiguobacte... 166 1e-40 sp|Q45657|QCRA_BACTC Menaquinol-cytochrome c reductase iron-sulf... 165 4e-40 ref|NP_843994.1| menaquinol-cytochrome c reductase, iron-sulfur ... 159 1e-38 >ref|NP_831301.1| Menaquinol-cytochrome c reductase iron-sulfur subunit [Bacillus cereus ATCC 14579] ref|NP_977970.1| menaquinol-cytochrome c reductase, iron-sulfur subunit [Bacillus cereus ATCC 10987] gb|AAP08502.1| Menaquinol-cytochrome c reductase iron-sulfur subunit [Bacillus cereus ATCC 14579] gb|AAS40578.1| menaquinol-cytochrome c reductase, iron-sulfur subunit [Bacillus cereus ATCC 10987] Length = 170 Score = 183 bits (465), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 83/163 (50%), Positives = 110/163 (67%), Gaps = 2/163 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 +SRRQFL YTL G FM AG ++PM RFA+DPVL K+ + + VA+ IT P+ F Sbjct: 8 VSRRQFLNYTLTGVGGFMAAGILMPMTRFALDPVLRKEAGTDMVAVAQVKDITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S +AW+ KDE+G+I A SP+CKHLGCTV WN+DKA+P+++ CPCHG Sbjct: 68 FKVKQVDGWYKSEEPKSAWVHKDESGDIVAFSPVCKHLGCTVNWNSDKAHPNQFFCPCHG 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTEVK 161 RYTK G N+ P PLD Y++K+ +YLG+ P K Sbjct: 128 GRYTKDGINIKGTPPLAPLDVYESKVKDGTLYLGKAKPRGGAK 170 >ref|NP_655423.1| Rieske, Rieske [2Fe-2S] domain [Bacillus anthracis A2012] Length = 170 Score = 183 bits (464), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 82/163 (50%), Positives = 110/163 (67%), Gaps = 2/163 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 +SRRQFL YTL G FM AG ++PM RFA+DPVL K+ + + VA+ IT P+ F Sbjct: 8 VSRRQFLNYTLTGVGGFMAAGILMPMTRFALDPVLRKEAGTDMVAVAQVKDITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ Q DGWY S +AW+ KDE+G+I A SP+CKHLGCTV WN+DK++P+++ CPCHG Sbjct: 68 FKVKQVDGWYKSEEPKSAWVHKDESGDIVAFSPVCKHLGCTVNWNSDKSHPNQFFCPCHG 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTEVK 161 RYTK G N+ P PLD Y++K+ +YLG+ P K Sbjct: 128 GRYTKDGMNIKGTPPLAPLDVYESKVKDGTLYLGKAKPRGGAK 170 >ref|ZP_00182099.1| hypothetical protein Exigu260701 [Exiguobacterium sp. 255-15] Length = 168 Score = 166 bits (421), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 78/157 (49%), Positives = 106/157 (67%), Gaps = 2/157 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 ++RRQFLTYTL G FM A ++PM+ FAVDPVL K GAG+ +KV + + IT P+ Sbjct: 8 VTRRQFLTYTLTGVGGFMAATMVMPMVNFAVDPVLKKSGAGDKVKVMKLSDITTEPKRVD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F+ QD WY TL+AW+ K++ GEI ALSPICKHLGC V + +D +P++++CPCH Sbjct: 68 FKKQTQDAWYEFEETLSAWVFKNDKGEILALSPICKHLGCQVSFGSDPTHPEQFYCPCHF 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIV 155 RYTK G N+ P KPLD Y+ + ++YLG+ V Sbjct: 128 GRYTKDGVNVPGTPPTKPLDGYEMQEKDGFLYLGKPV 164 >sp|Q45657|QCRA_BACTC Menaquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein) dbj|BAA12116.1| FeS protein subunit [Geobacillus stearothermophilus] Length = 169 Score = 165 bits (417), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 75/161 (46%), Positives = 103/161 (63%), Gaps = 2/161 (1%) Query: 1 MSRRQFLTYTLGGATAFMGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFT 60 ++RRQFL YTL G FM AG ++PM+RFA DP+L + + + VA+ +IT P+ F Sbjct: 8 VTRRQFLNYTLTGVGGFMAAGMLMPMLRFAFDPILRETAGTDMVAVADVKEITTEPKRFD 67 Query: 61 FELPQQDGWYASTATLTAWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHG 120 F++ +D WY S +AW+ KDE G+I ALSP+CKHLGCTV WN DK P+ + CPCH Sbjct: 68 FKVKVKDAWYESEEPRSAWVYKDEKGDIIALSPVCKHLGCTVDWNTDKNNPNHFFCPCHY 127 Query: 121 ARYTKIGKNLAVAP--KPLDQYKTKIDGDWVYLGEIVPNTE 159 YTK G N+ P PLD+Y+ ++ +YLG+ P E Sbjct: 128 GLYTKDGTNVPGTPPTAPLDRYEFEVKDGKLYLGKAKPRGE 168 >ref|NP_843994.1| menaquinol-cytochrome c reductase, iron-sulfur subunit [Bacillus anthracis str. Ames] gb|AAP25480.1| menaquinol-cytochrome c reductase, iron-sulfur subunit [Bacillus anthracis str. Ames] Length = 146 Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 71/146 (48%), Positives = 98/146 (67%), Gaps = 2/146 (1%) Query: 18 MGAGAILPMIRFAVDPVLHKKGAGEFIKVAETAKITDVPQEFTFELPQQDGWYASTATLT 77 M AG ++PM RFA+DPVL K+ + + VA+ IT P+ F F++ Q DGWY S + Sbjct: 1 MAAGILMPMTRFALDPVLRKEAGTDMVAVAQVKDITTEPKRFDFKVKQVDGWYKSEEPKS 60 Query: 78 AWIRKDENGEIYALSPICKHLGCTVGWNNDKAYPDEYHCPCHGARYTKIGKNLAVAP--K 135 AW+ KDE+G+I A SP+CKHLGCTV WN+DK++P+++ CPCHG RYTK G N+ P Sbjct: 61 AWVHKDESGDIVAFSPVCKHLGCTVNWNSDKSHPNQFFCPCHGGRYTKDGMNIKGTPPLA 120 Query: 136 PLDQYKTKIDGDWVYLGEIVPNTEVK 161 PLD Y++K+ +YLG+ P K Sbjct: 121 PLDVYESKVKDGTLYLGKAKPRGGAK 146 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 265,856,473 Number of extensions: 11004844 Number of successful extensions: 22417 Number of sequences better than 1.0e-05: 76 Number of HSP's gapped: 22482 Number of HSP's successfully gapped: 76 Length of query: 164 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 48 Effective length of database: 442,286,094 Effective search space: 21229732512 Effective search space used: 21229732512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)