BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0012.p (223 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242539.1| menaquinol-cytochrome c reductase (cytochrome b... 374 e-102 sp|Q45658|QCRB_BACTC Menaquinol-cytochrome c reductase cytochrom... 370 e-101 ref|NP_655424.1| cytochrome_b_N, Cytochrome b(N-terminal)/b6/pet... 369 e-101 pir||I39943 menaquinol-cytochrome-c reductase (EC 1.10.2.-) cyto... 368 e-101 ref|NP_692696.1| menaquinol-cytochrome-c reductase cytochrome b ... 368 e-101 >ref|NP_242539.1| menaquinol-cytochrome c reductase (cytochrome b subunit) [Bacillus halodurans] pir||A83859 menaquinol-cytochrome c reductase (cytochrome b subunit) qcrB [imported] - Bacillus halodurans (strain C-125) dbj|BAB05392.1| menaquinol-cytochrome c reductase (cytochrome b subunit) [Bacillus halodurans] Length = 223 Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust. Identities = 177/223 (79%), Positives = 197/223 (88%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M + +Y+WIDER D+TPIWRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQILSGM Sbjct: 1 MLQRLYDWIDERFDLTPIWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDIINAY SV YLQ +VAFG IVRGMHHWGASLVIVMMFLHT+RVFFTGSYK Sbjct: 61 FLTMYYVPDIINAYQSVAYLQNEVAFGVIVRGMHHWGASLVIVMMFLHTLRVFFTGSYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGG 180 PRE+NWV+G+LIFFVMLGLG TGYLLPWD KAYFAT V L+IA SVP++G K L+ GG Sbjct: 121 PRELNWVIGVLIFFVMLGLGFTGYLLPWDMKAYFATVVGLQIAESVPIIGDFAKTLLAGG 180 Query: 181 TIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 I+GA TL RFFA+HVFFLPA LL L+ HF +IR+QGISGPL Sbjct: 181 EIIGASTLARFFAIHVFFLPAALLGLIGVHFYLIRKQGISGPL 223 >sp|Q45658|QCRB_BACTC Menaquinol-cytochrome c reductase cytochrome b subunit dbj|BAA12117.1| cytochrome b6 [Geobacillus stearothermophilus] Length = 224 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/224 (78%), Positives = 198/224 (88%), Gaps = 1/224 (0%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M +Y+W+DERLDITP+WRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQILSGM Sbjct: 1 MLNKLYDWVDERLDITPLWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDI NA+ SV YLQ +VAFGQIVRGMHHWGASLVIVMMFLHT+RVFF G+YK Sbjct: 61 FLTMYYVPDIKNAWESVYYLQNEVAFGQIVRGMHHWGASLVIVMMFLHTLRVFFQGAYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGG 180 PREMNW+VG+LIF VM+GLG TGYLLPWD KA FATKV L+IA +VP++GP +K L+ G Sbjct: 121 PREMNWIVGVLIFMVMMGLGFTGYLLPWDMKALFATKVGLQIAEAVPLIGPAIKTLLAGD 180 Query: 181 -TIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 IVGA+TL RFFA+HVFFLPA LL L+ HF+MIRRQGISGPL Sbjct: 181 PEIVGAQTLARFFAIHVFFLPAALLGLMAAHFLMIRRQGISGPL 224 >ref|NP_655424.1| cytochrome_b_N, Cytochrome b(N-terminal)/b6/petB [Bacillus anthracis A2012] ref|NP_831302.1| Menaquinol-cytochrome c reductase cytochrome b subunit [Bacillus cereus ATCC 14579] ref|NP_843995.1| menaquinol-cytochrome c reductase, cytochrome b subunit [Bacillus anthracis str. Ames] ref|NP_977971.1| menaquinol-cytochrome c reductase, cytochrome b subunit [Bacillus cereus ATCC 10987] gb|AAP08503.1| Menaquinol-cytochrome c reductase cytochrome b subunit [Bacillus cereus ATCC 14579] gb|AAP25481.1| menaquinol-cytochrome c reductase, cytochrome b subunit [Bacillus anthracis str. Ames] gb|AAS40579.1| menaquinol-cytochrome c reductase, cytochrome b subunit [Bacillus cereus ATCC 10987] Length = 224 Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/224 (78%), Positives = 198/224 (88%), Gaps = 1/224 (0%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M +Y+W+DERLDITPIWRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQILSGM Sbjct: 1 MLNKIYDWVDERLDITPIWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDI NA+ SV YLQ +VA+GQIVRGMHHWGASLVIVMMFLHT+RVFF G+YK Sbjct: 61 FLTMYYVPDIKNAWESVYYLQNEVAYGQIVRGMHHWGASLVIVMMFLHTLRVFFQGAYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQG- 179 PRE+NW+VG+LIFFVMLGLG TGYLLPWD KA FATKV ++IA P++GP +K L+ G Sbjct: 121 PRELNWIVGVLIFFVMLGLGFTGYLLPWDMKALFATKVGIQIAEQTPLIGPYIKTLLAGH 180 Query: 180 GTIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 IVGA+TLTRFFA+HVFFLPA LL L+ HFIMIR+QGISGPL Sbjct: 181 SEIVGAQTLTRFFAIHVFFLPAALLGLMAFHFIMIRKQGISGPL 224 >pir||I39943 menaquinol-cytochrome-c reductase (EC 1.10.2.-) cytochrome b6 qcrB - Bacillus stearothermophilus prf||2112293A cytochrome b6 Length = 224 Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust. Identities = 174/224 (77%), Positives = 197/224 (87%), Gaps = 1/224 (0%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M +Y+W+DERLDITP+WRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+TVIQILSGM Sbjct: 1 MLNKLYDWVDERLDITPLWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVTVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDI NA+ SV YLQ +VAFGQIVRGMHHWGASLVIVMMFLHT+RVFF G+YK Sbjct: 61 FLTMYYVPDIKNAWESVYYLQNEVAFGQIVRGMHHWGASLVIVMMFLHTVRVFFQGAYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQGG 180 PREMNW+VG+LIF VM+GLG TGYLLPWD KA FATKV L+I +VP++GP +K L+ G Sbjct: 121 PREMNWIVGVLIFMVMMGLGFTGYLLPWDMKALFATKVGLQIVEAVPLIGPAIKTLLAGD 180 Query: 181 -TIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 IVGA+TL RFFA+HVFFLPA LL L+ HF+MIRRQGISGPL Sbjct: 181 PEIVGAQTLARFFAIHVFFLPAALLGLMAAHFLMIRRQGISGPL 224 >ref|NP_692696.1| menaquinol-cytochrome-c reductase cytochrome b subunit [Oceanobacillus iheyensis HTE831] dbj|BAC13731.1| menaquinol-cytochrome-c reductase cytochrome b subunit [Oceanobacillus iheyensis HTE831] Length = 224 Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/224 (78%), Positives = 197/224 (87%), Gaps = 1/224 (0%) Query: 1 MFKNVYNWIDERLDITPIWRDVADHEVPEHVNPAHHFSAFVYCFGGLTFFITVIQILSGM 60 M + +Y+WID+R+DITPIWRD+ADHEVPEHVNPAHHFSAFVYCFGGLTFF+ VIQILSGM Sbjct: 1 MLQKIYDWIDDRIDITPIWRDIADHEVPEHVNPAHHFSAFVYCFGGLTFFVVVIQILSGM 60 Query: 61 FLTMYYVPDIINAYASVEYLQTKVAFGQIVRGMHHWGASLVIVMMFLHTMRVFFTGSYKA 120 FLTMYYVPDI NA+ SV YLQT+VA GQIVRGMHHWGAS+VIVM+ LHT+RVFF G+YK Sbjct: 61 FLTMYYVPDIENAWKSVYYLQTEVAHGQIVRGMHHWGASVVIVMLLLHTLRVFFQGAYKK 120 Query: 121 PREMNWVVGMLIFFVMLGLGLTGYLLPWDNKAYFATKVTLEIANSVPVMGPVLKELMQG- 179 PRE+NW+VG+LIFFVMLGLG TGYLLPWDNKAYFAT+V LEIA VP +G LK L+ G Sbjct: 121 PRELNWMVGVLIFFVMLGLGFTGYLLPWDNKAYFATQVGLEIAEQVPFIGEQLKTLLAGD 180 Query: 180 GTIVGAETLTRFFALHVFFLPAVLLILLVGHFIMIRRQGISGPL 223 TIVGA+TLTRFFA+HVFFLP L LL HFI+IRRQGISGPL Sbjct: 181 ATIVGAQTLTRFFAIHVFFLPGALFALLAVHFILIRRQGISGPL 224 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.145 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 333,810,847 Number of extensions: 13159321 Number of successful extensions: 85287 Number of sequences better than 1.0e-05: 19799 Number of HSP's gapped: 64631 Number of HSP's successfully gapped: 19800 Length of query: 223 Length of database: 757,237,578 Length adjustment: 121 Effective length of query: 102 Effective length of database: 428,710,599 Effective search space: 43728481098 Effective search space used: 43728481098 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 123 (52.0 bits)