BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0256.0010.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242541.1| BH1675~unknown conserved protein in B. subtilis... 132 6e-30 ref|NP_692694.1| hypothetical protein OB1773 [Oceanobacillus ihe... 100 3e-20 ref|NP_977974.1| membrane protein, putative [Bacillus cereus ATC... 98 1e-19 ref|NP_390134.1| ypjA [Bacillus subtilis] >gi|1730926|sp|P54392|... 97 2e-19 ref|NP_655426.1| hypothetical protein predicted by GeneMark [Bac... 95 1e-18 >ref|NP_242541.1| BH1675~unknown conserved protein in B. subtilis [Bacillus halodurans] pir||C83859 hypothetical protein BH1675 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05394.1| BH1675~unknown conserved protein in B. subtilis [Bacillus halodurans] Length = 202 Score = 132 bits (331), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 74/193 (38%), Positives = 104/193 (53%), Gaps = 13/193 (6%) Query: 1 MWLLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPK 60 +W L ++NFLGTIYGYIWY +QL T P L FVPDSP Sbjct: 17 LWALLVINFLGTIYGYIWYADQLAQT----PAHFLIFVPDSPTASLFFVFVLIAFLQRKN 72 Query: 61 GIKGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 L EA A VT +KYGIWAV++I AG GDT++W+ +ML+ SH GMA++A + Sbjct: 73 W-------SLFEAFAAVTLIKYGIWAVAMILAGAAAGDTLNWQHYMLIFSHGGMAIQAYL 125 Query: 121 YARFFSFRR-MLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVN-EVQYFTIGLTFFSTA 178 Y ++ R L + W ND +DY+ ++PW+ L D V E+ FT+GL+ FS Sbjct: 126 YMSYYRIRLWHLLVVSSWTLLNDYIDYAHLMHPWVSRRLNDYVIPEIAMFTVGLSLFSIL 185 Query: 179 AAWLFGGRSRRTE 191 + + R + + Sbjct: 186 SVYFLSVRGKAAK 198 >ref|NP_692694.1| hypothetical protein OB1773 [Oceanobacillus iheyensis HTE831] dbj|BAC13729.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 191 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 71/190 (37%), Positives = 97/190 (51%), Gaps = 14/190 (7%) Query: 3 LLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPKGI 62 +LFI+N +GTIYGY WYG QLE T P +PFVPDSP + K I Sbjct: 14 ILFIINLVGTIYGYYWYGWQLEIT----PPIFIPFVPDSPTASLFFTVFLLFFLFR-KNI 68 Query: 63 KGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALIYA 122 IEALA+V+ KYGIWAV + Y + + +ML+ SH GMA++ L+YA Sbjct: 69 P------FIEALAIVSLFKYGIWAVVMNLLTLYVDEYLHPSGYMLMASHLGMAIQGLLYA 122 Query: 123 RFFSFR-RMLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFSTAAA- 180 F+ + + + LA ND++DY G P + L NE+ YFT L+ S + Sbjct: 123 PFYKIKLKHIVLASIVVLHNDIIDYVFGHMP-MYGSLSSYTNEIGYFTFWLSILSIGISY 181 Query: 181 WLFGGRSRRT 190 WL + R Sbjct: 182 WLTIHQRERN 191 >ref|NP_977974.1| membrane protein, putative [Bacillus cereus ATCC 10987] gb|AAS40582.1| membrane protein, putative [Bacillus cereus ATCC 10987] Length = 190 Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 100/192 (52%), Gaps = 19/192 (9%) Query: 4 LFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPKGIK 63 L +VN LGTIYG+IWYGNQL+ T+ P++ PFVPDSP + Sbjct: 11 LLVVNILGTIYGFIWYGNQLKETS---PIFW-PFVPDSPMASLFFVFV----------LI 56 Query: 64 GTLVRE---LIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 L++ LIEALA+VT +KYGIWAV + Y + + +ML++SH MAV+A++ Sbjct: 57 AFLIKRNWGLIEALAIVTLIKYGIWAVVVNGIMIYVKGPIGFIGYMLMLSHFAMAVQAVL 116 Query: 121 YARFFSFRR-MLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFSTAA 179 YA F+ ++ +A W ND +DY P ++ V E+ YFT L+ Sbjct: 117 YAPFYRIKKWHFAVAAIWTLHNDAIDYLFWQMP-RYGIMHLFVGEIGYFTFWLSIAVLCM 175 Query: 180 AWLFGGRSRRTE 191 + + R R + Sbjct: 176 TYYYCLRENRKQ 187 >ref|NP_390134.1| ypjA [Bacillus subtilis] sp|P54392|YPJA_BACSU Hypothetical protein ypjA pir||A69937 hypothetical protein ypjA - Bacillus subtilis gb|AAB38438.1| putative [Bacillus subtilis] emb|CAB14169.1| ypjA [Bacillus subtilis subsp. subtilis str. 168] Length = 185 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 96/190 (50%), Gaps = 13/190 (6%) Query: 3 LLFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPKGI 62 L+ +NFLGT+YGY WY QL T P L FVPDSP Sbjct: 4 LVLAINFLGTVYGYYWYLPQLLET----PARFLIFVPDSPTATFFFLFVLLAFLMKRNA- 58 Query: 63 KGTLVRELIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALIYA 122 L+EALA+VT VKYG+WAV++ F + W+ +ML+ SH MAV+ ++Y+ Sbjct: 59 ------PLLEALALVTLVKYGLWAVAMNFLVLAVTGDLPWEGYMLIASHFAMAVQGVLYS 112 Query: 123 RFFSFRR-MLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLTFFSTAAAW 181 +F F L +A W ND++DY + P +L D + E+ Y T L+ FS A A+ Sbjct: 113 PYFRFSFWHLAIAAVWTLHNDVIDYLFDMMPQY-SMLSDYMTEIGYGTFWLSIFSIALAY 171 Query: 182 LFGGRSRRTE 191 ++T+ Sbjct: 172 FLVVSKKQTK 181 >ref|NP_655426.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] Length = 200 Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 66/174 (37%), Positives = 95/174 (54%), Gaps = 19/174 (10%) Query: 4 LFIVNFLGTIYGYIWYGNQLEFTAGNYPVWLLPFVPDSPXXXXXXXXXXXXXXYPPKGIK 63 L +VN LGTIYG+IWYGNQL+ T+ P++ PFVPDSP + Sbjct: 17 LLVVNILGTIYGFIWYGNQLKETS---PIFW-PFVPDSPMASLFFVFV----------LI 62 Query: 64 GTLVRE---LIEALAVVTSVKYGIWAVSIIFAGGYQGDTVSWKDWMLVVSHTGMAVEALI 120 L++ LIEALA+VT +KYGIWAV + Y + + +ML++SH MAV+A++ Sbjct: 63 AFLIKRNWGLIEALAIVTLIKYGIWAVVVNGVMIYVKGPIGFIGYMLMLSHFAMAVQAVL 122 Query: 121 YARFFSFRR-MLPLALFWAFANDMVDYSKGVYPWLPDVLEDNVNEVQYFTIGLT 173 YA F+ ++ +A W ND +DY P ++ V E+ YFT L+ Sbjct: 123 YAPFYRIKKWHFAVAAIWTLHNDAIDYLFWQMP-RYGIMHLFVGEIGYFTFWLS 175 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.327 0.143 0.478 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 304,804,071 Number of extensions: 11058554 Number of successful extensions: 41125 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 41091 Number of HSP's successfully gapped: 14 Length of query: 201 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 81 Effective length of database: 431,425,698 Effective search space: 34945481538 Effective search space used: 34945481538 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 123 (52.0 bits)