BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0001.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_656822.1| EPSP_syntase, EPSP synthase (3-phosphoshikimate... 299 9e-80 ref|NP_979297.1| 3-phosphoshikimate 1-carboxyvinyltransferase [B... 298 2e-79 ref|NP_390141.1| 5-enolpyruvoylshikimate-3-phosphate synthase [B... 296 7e-79 ref|NP_832685.1| 3-phosphoshikimate 1-carboxyvinyltransferase [B... 294 2e-78 ref|NP_692701.1| 5-enolpyruvoylshikimate-3-phosphate synthase [O... 291 2e-77 >ref|NP_656822.1| EPSP_syntase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) [Bacillus anthracis A2012] ref|NP_845288.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus anthracis str. Ames] gb|AAP26774.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus anthracis str. Ames] Length = 429 Score = 299 bits (765), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 177/419 (42%), Positives = 239/419 (57%), Gaps = 7/419 (1%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 ++PGDKSIS RA++ AIAEG T+ L D S I+ +++GV I NGDE++V G+ Sbjct: 18 TIPGDKSISHRAVMFGAIAEGTTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGK 77 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GLQ P L+VGN+ T+ RLM +LA F + + G+ ++ RPM V PL MGA Sbjct: 78 GLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFLSCVQGDTSIAKRPMKRVTNPLKQMGA 137 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 I+ PL I+G L I+ + V SAQ KSA+L AGL AEG+T + SRD Sbjct: 138 NIDGREEGTFTPLTIRGGD-LKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRD 196 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGSL 247 HTER++ FG+ + + L GG A DV VPGD+SSAAF L A AI L Sbjct: 197 HTERMLEAFGVKVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAII---PNSKL 253 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 +++ VG+NPTR+G I +L +MG T++ E S EP A+I T T + G Sbjct: 254 VLENVGMNPTRTGIIDVLEKMGATFTVEPINEGAS-EPAANI--TIETSSLKGIEIGGDI 310 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I LIDE+P++A + AEG TVI+D EL+ K+TNRI T L G +DD M+ Sbjct: 311 IPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDRMI 370 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFAH 426 I+G L VNS GDHRI M A+ + +II + + VSYP F E+L + A Sbjct: 371 IYGKSALKGNTVNSYGDHRIGMMLAIAGCIAEGKTIIEDAEAVGVSYPTFFEELQKLAK 429 >ref|NP_979297.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus cereus ATCC 10987] gb|AAS41905.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus cereus ATCC 10987] Length = 429 Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 177/419 (42%), Positives = 239/419 (57%), Gaps = 7/419 (1%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 ++PGDKSIS RA++ AIAEG+ T+ L D S I+ +++GV I NGDE++V G+ Sbjct: 18 TIPGDKSISHRAVMFGAIAEGKTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGK 77 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GLQ P L+VGN+ T+ RLM +LA F + + G+A ++ RPM V PL MGA Sbjct: 78 GLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDASIAKRPMKRVTNPLKQMGA 137 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 I+ PL I+G L I+ + V SAQ KSA+L AGL AEG+T + SRD Sbjct: 138 NIDGREEGTFTPLTIRGGD-LKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRD 196 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGSL 247 HTER++ FG+ + + L GG A DV VPGD+SSAAF L A AI L Sbjct: 197 HTERMLEAFGVKVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAII---PNSKL 253 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 +++ VG+NPTR+G I +L +MG T++ E S EP A+I T T + G Sbjct: 254 VLQNVGMNPTRTGIIDVLEKMGATFTVEPINEGAS-EPAANI--TIETSSLKGIEIGGDI 310 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I LIDE+P++A + AEG TVI+D EL+ K+TNRI T L G +DD M+ Sbjct: 311 IPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDGMI 370 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFAH 426 I+G L VNS GDHRI M A+ + I + + VSYP F E+L + A Sbjct: 371 IYGKSALKGNTVNSYGDHRIGMMLAIAGCIAKGKTTIEDAEAVGVSYPTFFEELQKLAK 429 >ref|NP_390141.1| 5-enolpyruvoylshikimate-3-phosphate synthase [Bacillus subtilis] sp|P20691|AROA_BACSU 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) pir||C26532 5-enolpyruvoylshikimate-3-phosphate synthase aroE - Bacillus subtilis gb|AAA20869.1| AroE [Bacillus subtilis] emb|CAB14176.1| 5-enolpyruvoylshikimate-3-phosphate synthase [Bacillus subtilis subsp. subtilis str. 168] Length = 428 Score = 296 bits (758), Expect = 7e-79, Method: Compositional matrix adjust. Identities = 174/423 (41%), Positives = 246/423 (58%), Gaps = 11/423 (2%) Query: 5 EFHSVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSV 64 E H +PGDKSIS R+++ A+A G TV N L D S I R++GV I + ++ + Sbjct: 12 EIH-IPGDKSISHRSVMFGALAAGTTTVKNFLPGADCLSTIDCFRKMGVHIEQSSSDVVI 70 Query: 65 HGQGLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTD 124 HG+G+ L+ P L+VGN+ T+ RLML +LAG+ F + + G+ ++ RPM V +PL Sbjct: 71 HGKGIDALKEPESLLDVGNSGTTIRLMLGILAGRPFYSAVAGDESIAKRPMKRVTEPLKK 130 Query: 125 MGAVIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQ 184 MGA I+ PL + GAS L ID + V SAQ KSA+L AGL AEG T + + Sbjct: 131 MGAKIDGRAGGEFTPLSVSGAS-LKGIDYVSPVASAQIKSAVLLAGLQAEGTTTVTEPHK 189 Query: 185 SRDHTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRK 244 SRDHTER++ FG+ + D + GG A D+ VPGD+SSAAF LAA A+ R Sbjct: 190 SRDHTERMLSAFGVKLSEDQTSVSIAGGQKLTAADIFVPGDISSAAFFLAAGAMVPNSR- 248 Query: 245 GSLLIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISG-EPVADIYCTPGTRLSSVLAE 303 +++K VG+NPTR+G I +L MG L ++ A+ SG EP D+ T + Sbjct: 249 --IVLKNVGLNPTRTGIIDVLQNMGAKLEIKPSAD--SGAEPYGDLIIE--TSSLKAVEI 302 Query: 304 GNGRIQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSD 363 G I LIDE+P++A ++ AEG TVI+D EL+ K+TNRI T L+ G E + Sbjct: 303 GGDIIPRLIDEIPIIALLATQAEGTTVIKDAAELKVKETNRIDTVVSELRKLGAEIEPTA 362 Query: 364 DEMVIHGGRPLS-PAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLS 422 D M ++G + L A V+S GDHRI M + + +EP I + I+VSYP F E L+ Sbjct: 363 DGMKVYGKQTLKGGAAVSSHGDHRIGMMLGIASCITEEPIEIEHTDAIHVSYPTFFEHLN 422 Query: 423 QFA 425 + + Sbjct: 423 KLS 425 >ref|NP_832685.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus cereus ATCC 14579] gb|AAP09886.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Bacillus cereus ATCC 14579] Length = 429 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/419 (41%), Positives = 239/419 (57%), Gaps = 7/419 (1%) Query: 8 SVPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQ 67 ++PGDKSIS RA++ +IAEG+ T+ L D S I+ +++GV I NGDE++V G+ Sbjct: 18 TIPGDKSISHRAVMFGSIAEGKTTIKGFLPGADCLSTISCFKEMGVEITQNGDEVTVVGK 77 Query: 68 GLRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGA 127 GL GLQ P L+VGN+ T+ RLM +LA F + + G+ ++ RPM V PL MGA Sbjct: 78 GLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDESIAKRPMKRVTNPLKQMGA 137 Query: 128 VIEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRD 187 I+ PL I+G L I+ + V SAQ KSA+L AGL AEG+T + SRD Sbjct: 138 NIDGREEGTFTPLTIRGGD-LKAIEYISPVASAQVKSAILLAGLRAEGVTAVTEPHISRD 196 Query: 188 HTERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAAFLLAAYAIRGVDRKGSL 247 HTER++ FG+ + + L GG A D+ VPGD+SSAAF L A AI L Sbjct: 197 HTERMLEAFGVKVTREGKTVKLSGGQKLTATDIQVPGDVSSAAFFLVAGAII---PNSKL 253 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 +++ VG+NPTR+G I +L +MG T+ E S EP A+I T T + G Sbjct: 254 VLQNVGMNPTRTGIIDVLEKMGATFTVDLINEGAS-EPAANI--TIETSSLKGIEIGGDI 310 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I LIDE+P++A + AEG TVI+D EL+ K+TNRI T L G +DD M+ Sbjct: 311 IPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDGMI 370 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQFAH 426 I+G L VNS GDHRI M A+ + +II + + VSYP F ++L + A Sbjct: 371 IYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKTIIEDAEAVGVSYPTFFDELQKLAK 429 >ref|NP_692701.1| 5-enolpyruvoylshikimate-3-phosphate synthase [Oceanobacillus iheyensis HTE831] sp|Q8EQC1|AROA_OCEIH 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) dbj|BAC13736.1| 5-enolpyruvoylshikimate-3-phosphate synthase [Oceanobacillus iheyensis HTE831] Length = 429 Score = 291 bits (745), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 169/417 (40%), Positives = 244/417 (58%), Gaps = 9/417 (2%) Query: 9 VPGDKSISQRAIVLNAIAEGQGTVYNVLRSRDIESCITILRQLGVRIAWNGDELSVHGQG 68 VPGDKSIS R+I+ +IA+G TV N L D I +++GV I NG +++ G G Sbjct: 19 VPGDKSISHRSIIFGSIAKGTTTVTNFLDGEDCMRTIDAFKEMGVPIQKNGSNVTIEGTG 78 Query: 69 LRGLQAPAGRLEVGNTATSARLMLSVLAGQSFAAELGGNALLSARPMDWVVQPLTDMGAV 128 L GL P L+ GN+ T+ RLML +LAG F + G+A LS RPM+ VV PL MGA Sbjct: 79 LSGLMEPNKELDFGNSGTTTRLMLGLLAGLPFNTTVYGDASLSKRPMNRVVDPLRLMGAT 138 Query: 129 IEYLGAKGCLPLRIQGASPLSPIDMEATVFSAQEKSALLFAGLYAEGITRYRQRCQSRDH 188 I+ LPL I G S L+ ID + V SAQ KSALL AGL++E T R++ +R+H Sbjct: 139 IDGKEQGNYLPLTITGTS-LNSIDYDLPVKSAQVKSALLLAGLHSENTTIVREKSPTRNH 197 Query: 189 TERLMHYFGIDIHSDNDVTFLKGGNAFCAKDVMVPGDMSSAA-FLLAAYAIRGVDRKGSL 247 TE ++ FG +I SD T + + V VPGD+SSAA F++AA + G + + Sbjct: 198 TETMLQAFGANIKSDGHTTSISKTDDLQGCHVEVPGDISSAAFFVVAACMVPGSE----V 253 Query: 248 LIKQVGVNPTRSGFIRLLAEMGLHLTLQAEAELISGEPVADIYCTPGTRLSSVLAEGNGR 307 ++K VG+N TR+G I ++ +MG LT+Q E ++ GE + DI + L+ V EG+ Sbjct: 254 ILKDVGLNETRTGIIDIVLQMGAKLTIQNE-RIVGGEKIGDILII-SSPLTGVTIEGDA- 310 Query: 308 IQSLIDEVPLLAAVSAFAEGNTVIRDCGELRDKDTNRIQTTAGVLKAFGVETSCSDDEMV 367 I LIDE+P+LA ++ A+G T+I+D EL+ K+T+R+ + L G + + ++D M+ Sbjct: 311 IPRLIDEIPILALLATQADGTTIIKDAEELKVKETDRLLAVSENLTQLGADVTPTEDGMI 370 Query: 368 IHGGRPLSPAIVNSCGDHRIAMTAAVLASSLDEPSIIRNCGCINVSYPGFVEDLSQF 424 I G L S DHRIAM + + ++ ++ N CIN+SYP FV DL Sbjct: 371 IRGNTKLKGGNFKSFDDHRIAMMGIIASLVTEDTVVVDNIDCINISYPNFVNDLQSI 427 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 610,791,850 Number of extensions: 24381635 Number of successful extensions: 54723 Number of sequences better than 1.0e-05: 880 Number of HSP's gapped: 52389 Number of HSP's successfully gapped: 883 Length of query: 433 Length of database: 757,237,578 Length adjustment: 129 Effective length of query: 304 Effective length of database: 406,989,807 Effective search space: 123724901328 Effective search space used: 123724901328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)