BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0254.0031.p
         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_832212.1| Macrolide-efflux protein [Bacillus cereus ATCC ...    64   1e-09
ref|NP_244747.1| multidrug resistance protein [Bacillus halodura...    63   2e-09

>ref|NP_832212.1| Macrolide-efflux protein [Bacillus cereus ATCC 14579]
 gb|AAP09413.1| Macrolide-efflux protein [Bacillus cereus ATCC 14579]
          Length = 417

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 39/60 (65%)

Query: 9  NSLLHNKVYMRVYSAYATAAFGDWFDSLAIQVLVGYRWHASPLMLALIPVAVALPSVLLG 68
            LL N+VY++V+SAY+    G + D LAI  +VG+ W   P M+ LIPVA ALP ++ G
Sbjct: 7  KGLLGNRVYLQVFSAYSLLMLGVFIDMLAIMTIVGFEWEVDPTMIGLIPVAYALPGIIFG 66


>ref|NP_244747.1| multidrug resistance protein [Bacillus halodurans]
 pir||H84134 multidrug resistance protein BH3880 [imported] - Bacillus
          halodurans (strain C-125)
 dbj|BAB07599.1| multidrug resistance protein [Bacillus halodurans]
          Length = 424

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 43/65 (66%)

Query: 4  SVKQGNSLLHNKVYMRVYSAYATAAFGDWFDSLAIQVLVGYRWHASPLMLALIPVAVALP 63
          + K+  +L     Y +++++Y+ +  G WFD +A+ VL GY W+A PL+LA IP+A ALP
Sbjct: 3  TTKKRETLWQQPGYKKLFTSYSISMVGQWFDLVALLVLFGYVWNADPLLLAFIPIAFALP 62

Query: 64 SVLLG 68
           +L G
Sbjct: 63 QMLFG 67


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,935,761
Number of extensions: 3149504
Number of successful extensions: 5451
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 5451
Number of HSP's successfully gapped: 2
Length of query: 78
Length of database: 757,237,578
Length adjustment: 48
Effective length of query: 30
Effective length of database: 626,912,826
Effective search space: 18807384780
Effective search space used: 18807384780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)