BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0030.p (194 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_980075.1| phosphoglycerate mutase family protein, putativ... 191 8e-48 ref|NP_833470.1| Phosphoglycerate mutase [Bacillus cereus ATCC 1... 187 9e-47 ref|NP_657710.1| PGAM, Phosphoglycerate mutase family [Bacillus ... 186 2e-46 ref|NP_978140.1| phosphoglycerate mutase family protein [Bacillu... 122 4e-27 ref|NP_831466.1| Phosphoglycerate mutase [Bacillus cereus ATCC 1... 119 3e-26 >ref|NP_980075.1| phosphoglycerate mutase family protein, putative [Bacillus cereus ATCC 10987] gb|AAS42683.1| phosphoglycerate mutase family protein, putative [Bacillus cereus ATCC 10987] Length = 191 Score = 191 bits (485), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 98/187 (52%), Positives = 128/187 (68%), Gaps = 1/187 (0%) Query: 4 TTYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIA 63 TYIYMVRHG+S K G ER+R L+ +G DA RVT+ L EGID SSPY RAV TI Sbjct: 2 NTYIYMVRHGESPKLEGGERTRGLTEKGSLDAHRVTEILKTEGIDTFISSPYKRAVLTIE 61 Query: 64 GLAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKE 123 A KEI E+LKE + +DR + D E+YP +++MF+ PDF + GES C+ Sbjct: 62 KTADFYEKEILIYENLKECRFASEDRIISDKEVYPLVKKMFSNPDFARTE-GESYADCQR 120 Query: 124 RAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGL 183 R VK LKEIL + G++IVIGTHG+VMTLMMN F ++Y +FL+ T KPDIY+ME+K+ Sbjct: 121 RVVKVLKEILMDFQGQKIVIGTHGLVMTLMMNYFDKQYSFEFLMNTSKPDIYKMELKEEQ 180 Query: 184 LSHVQRM 190 L +V+R+ Sbjct: 181 LMNVERL 187 >ref|NP_833470.1| Phosphoglycerate mutase [Bacillus cereus ATCC 14579] gb|AAP10671.1| Phosphoglycerate mutase [Bacillus cereus ATCC 14579] Length = 191 Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 97/187 (51%), Positives = 128/187 (68%), Gaps = 1/187 (0%) Query: 4 TTYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIA 63 +TYIYMVRHG+S K GNER R L+ +G DA+RVT L E ID SSPY RA+ TI Sbjct: 2 STYIYMVRHGESPKLEGNERMRGLTERGHMDARRVTDILKAERIDTFISSPYNRAMLTIE 61 Query: 64 GLAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKE 123 A KEI E+LKE ++ +D+ + D E+YP +++MF+ PDF + GES C+ Sbjct: 62 ESANFHEKEIVVYENLKECMFSSEDQVISDKEVYPLVQKMFSNPDFARTE-GESYADCQR 120 Query: 124 RAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGL 183 R VK LKEIL + G +IVIGTHG+VMTLMMN F ++YG +FL+ T KPDIY+ME K+ Sbjct: 121 RVVKVLKEILMDFRGCKIVIGTHGLVMTLMMNYFDKQYGFEFLMNTSKPDIYKMEFKEEQ 180 Query: 184 LSHVQRM 190 L +V+R+ Sbjct: 181 LMNVERL 187 >ref|NP_657710.1| PGAM, Phosphoglycerate mutase family [Bacillus anthracis A2012] ref|NP_846124.1| phosphoglycerate mutase family protein, putative [Bacillus anthracis str. Ames] gb|AAP27610.1| phosphoglycerate mutase family protein, putative [Bacillus anthracis str. Ames] Length = 191 Score = 186 bits (473), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 94/187 (50%), Positives = 126/187 (67%), Gaps = 1/187 (0%) Query: 4 TTYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIA 63 TYIYMVRHG+S K G ER+R L+ +G D +VT L EGID SSPY RAV TI Sbjct: 2 NTYIYMVRHGESPKLDGGERTRGLTEKGSLDVHKVTDILKTEGIDTFISSPYKRAVLTIE 61 Query: 64 GLAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKE 123 A +EI E+LKE ++ D+ + D E+YP +++MF+ P + L + GES C+ Sbjct: 62 KTANLYEREILIYENLKECMFSSGDQVISDKEVYPLVQKMFSNPGYALAE-GESYADCQR 120 Query: 124 RAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGL 183 R VK LKEIL + G++IVIGTHG+VMTLMMN F ++YG +FL+ T KPDIY+ME K+ Sbjct: 121 RVVKVLKEILMDFQGQKIVIGTHGLVMTLMMNYFDKQYGFEFLMNTSKPDIYKMEFKEKQ 180 Query: 184 LSHVQRM 190 L +V+R+ Sbjct: 181 LMNVERL 187 >ref|NP_978140.1| phosphoglycerate mutase family protein [Bacillus cereus ATCC 10987] gb|AAS40748.1| phosphoglycerate mutase family protein [Bacillus cereus ATCC 10987] Length = 191 Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/189 (39%), Positives = 103/189 (54%), Gaps = 12/189 (6%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 T IY VRH S T ER R LS +G DA+ VT L + ID + SSPY RAV T+ G Sbjct: 2 TIIYFVRHAHSTYTK-EERERPLSEKGHLDAENVTSLLKDKHIDVVISSPYKRAVQTVQG 60 Query: 65 LAGALGKEIHKVEDLKEKCWTEDDRTLQDPELYPF---LEQMFAEPDFVLEDGGESNRVC 121 +A I EDL+E R L + F +++++ + DF E GGESN V Sbjct: 61 IANTYDVSIQIEEDLRE-------RLLSSEPVADFNDAVQKVWEDWDFAYE-GGESNDVA 112 Query: 122 KERAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKD 181 + RAV ++ IL+ + G+ IVIGTHG +M L+MN F +Y F R PDI+++ + Sbjct: 113 QRRAVICMQNILKKYEGKNIVIGTHGNIMVLLMNYFDSKYDFRFWKTIRMPDIFKLNFHN 172 Query: 182 GLLSHVQRM 190 L +R+ Sbjct: 173 EDLVSAERI 181 >ref|NP_831466.1| Phosphoglycerate mutase [Bacillus cereus ATCC 14579] gb|AAP08667.1| Phosphoglycerate mutase [Bacillus cereus ATCC 14579] Length = 191 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 69/187 (36%), Positives = 99/187 (52%), Gaps = 8/187 (4%) Query: 5 TYIYMVRHGDSLKTSGNERSRFLSAQGEKDAQRVTQRLLGEGIDALYSSPYTRAVDTIAG 64 T IY VRH S T ER R LS +G DA+ VT L + ID + SSPY RA+ T+ G Sbjct: 2 TTIYFVRHAHSTYTK-EERERPLSEKGHCDAENVTHLLKDKHIDVVISSPYKRAIQTVQG 60 Query: 65 LAGALGKEIHKVEDLKEKCW-TEDDRTLQDPELYPFLEQMFAEPDFVLEDGGESNRVCKE 123 +A I EDL+E+ TE D ++ ++ + F E GGESN + + Sbjct: 61 IANTYKLSIQTEEDLRERLLSTEPVSNFNDA-----MQNVWEDWSFAYE-GGESNDIAQR 114 Query: 124 RAVKALKEILRNHPGERIVIGTHGMVMTLMMNEFAEEYGLDFLLQTRKPDIYRMEMKDGL 183 RAV ++ IL+ + G+ IVIGTHG +M L+MN F +Y +F PD+Y++ Sbjct: 115 RAVICMQNILKQYEGKNIVIGTHGNIMVLLMNYFNSKYDFEFWKTLHMPDVYKLNFDKNR 174 Query: 184 LSHVQRM 190 +R+ Sbjct: 175 FISAERI 181 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 281,845,033 Number of extensions: 11121020 Number of successful extensions: 30864 Number of sequences better than 1.0e-05: 51 Number of HSP's gapped: 30873 Number of HSP's successfully gapped: 51 Length of query: 194 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 75 Effective length of database: 434,140,797 Effective search space: 32560559775 Effective search space used: 32560559775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 122 (51.6 bits)