BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0013.p (296 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_736375.1| Unknown [Streptococcus agalactiae NEM316] >gi|2... 260 3e-68 ref|NP_688943.1| ABC transporter, ATP-binding protein [Streptoco... 259 4e-68 ref|ZP_00061486.1| COG1131: ABC-type multidrug transport system,... 239 6e-62 ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC tra... 213 5e-54 ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera... 207 3e-52 >ref|NP_736375.1| Unknown [Streptococcus agalactiae NEM316] emb|CAD47601.1| Unknown [Streptococcus agalactiae NEM316] Length = 282 Score = 260 bits (664), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 129/289 (44%), Positives = 190/289 (65%), Gaps = 8/289 (2%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 M L L+ +TK +G+K ++Q++ PG+YGLLGANG GKTTL+ ++ +G++Y Sbjct: 1 MLLQLDNITKSYGKKIVLNQISYQFTPGLYGLLGANGTGKTTLLNLMSHFTFADSGNIYW 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 +G+ + EE+ +G+LPQ F YY FT F+ Y+A LKG+ +KA+ LL LV Sbjct: 61 NGQEQS---EEFYRHIGFLPQHFRYYDQFTGIAFLNYIATLKGVDKKKAKQEIPRLLELV 117 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 GL +V KKI ++SGGMKQRLGIAQA++NDP IL+LDEPT GLDPKERV FR++++ S Sbjct: 118 GLGDVGKKKISSYSGGMKQRLGIAQALINDPEILILDEPTVGLDPKERVKFRHILSQLST 177 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 +KI+ILSTHIVSD+E ++ ++++K+GK I + + ++GKVW P +S Sbjct: 178 NKIIILSTHIVSDVEAVAKEIIVLKNGKFIEHGNTAQLLKTIEGKVWEIT----TEPGLS 233 Query: 241 SSFCVANLHHG-DDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQND 288 +A ++ D+ + RV+SD P D A +PTLED Y+YHF+ + Sbjct: 234 QIPNIAIVNEKVFSDSRVFRVVSDICPSDSAQLVVPTLEDFYIYHFRGE 282 >ref|NP_688943.1| ABC transporter, ATP-binding protein [Streptococcus agalactiae 2603V/R] gb|AAN00816.1| ABC transporter, ATP-binding protein [Streptococcus agalactiae 2603V/R] Length = 282 Score = 259 bits (663), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 129/289 (44%), Positives = 190/289 (65%), Gaps = 8/289 (2%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 M L L+ +TK +G+K ++Q++ PG+YGLLGANG GKTTL+ ++ +G++Y Sbjct: 1 MLLQLDNITKSYGKKIVLNQISYQFTPGLYGLLGANGTGKTTLLNLMSHFTLADSGNIYW 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 +G+ + EE+ +G+LPQ F YY FT F+ Y+A LKG+ +KA+ LL LV Sbjct: 61 NGQEQS---EEFYRHIGFLPQHFRYYDQFTGIAFLNYIATLKGVDKKKAKQEIPRLLELV 117 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 GL +V KKI ++SGGMKQRLGIAQA++NDP IL+LDEPT GLDPKERV FR++++ S Sbjct: 118 GLGDVGKKKISSYSGGMKQRLGIAQALINDPEILILDEPTVGLDPKERVKFRHILSQLST 177 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 +KI+ILSTHIVSD+E ++ ++++K+GK I + + ++GKVW P +S Sbjct: 178 NKIIILSTHIVSDVEAVAKEIIVLKNGKFIEHGNTAQLLKTIEGKVWEIT----TEPGLS 233 Query: 241 SSFCVANLHHG-DDDTVILRVLSDELPMDGAMNEIPTLEDLYLYHFQND 288 +A ++ D+ + RV+SD P D A +PTLED Y+YHF+ + Sbjct: 234 QIPNIAIVNEKVFSDSRVFRVVSDICPSDSAQLVVPTLEDFYIYHFRGE 282 >ref|ZP_00061486.1| COG1131: ABC-type multidrug transport system, ATPase component [Clostridium thermocellum ATCC 27405] Length = 286 Score = 239 bits (610), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 125/282 (44%), Positives = 181/282 (64%), Gaps = 1/282 (0%) Query: 1 MELVLNKLTKQFGRKTAVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYL 60 MEL L +TK +G++ A+D G+YGLLG NGAGKTTL+ ++ GVL + G + L Sbjct: 1 MELKLENITKFYGKQCALDNFNGVFTEGIYGLLGPNGAGKTTLINIIIGVLEASKGAILL 60 Query: 61 DGKRAADLGEEYRSLLGYLPQDFGYYPDFTAGEFMLYVAALKGISPEKARIRSKELLALV 120 DG +G +Y +GYLPQ+ +Y +F EF+ Y+ A+KGI + R +E+L LV Sbjct: 61 DGSDVKKMGTKYLDKVGYLPQEPTFYKNFRVDEFLKYMCAIKGIPSKHVDSRIEEVLELV 120 Query: 121 GLTEVSAKKIRTFSGGMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSK 180 LT+ KK+ SGGM+QRLGI QA+LN P IL+LDEPTAGLDP ER+ FRN+I+ SK Sbjct: 121 NLTDSYKKKVGALSGGMRQRLGIGQAILNRPDILILDEPTAGLDPGERIRFRNIISKLSK 180 Query: 181 DKIVILSTHIVSDIEYISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAIS 240 D+IV+L+THIVSD+EYI+ VL++K GKL+ + ++GK+W V++ Sbjct: 181 DRIVLLATHIVSDVEYIAKEVLILKKGKLVKKGTTKELERTVEGKIWNVTVSETDVEKYM 240 Query: 241 SSFCVANLHHGDDDTVILRVLSDELPMDGAMNEIPTLEDLYL 282 + +AN+ +D + LR++S+ P A P+LED++L Sbjct: 241 HKYLIANIKRL-EDKLQLRIVSESRPDGIAEAVAPSLEDVFL 281 >ref|NP_809214.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] gb|AAO75408.1| ATP-binding transport protein natA (Na+ ABC transporter) [Bacteroides thetaiotaomicron VPI-5482] Length = 503 Score = 213 bits (542), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/273 (42%), Positives = 171/273 (62%), Gaps = 4/273 (1%) Query: 17 AVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYLDGKRAADLGEEYRSLL 76 A+ ++ ++ G++GLLG NGAGK+TLMR++CG+ + G ++++G EE +SL+ Sbjct: 231 ALRGVSFEIQTGMFGLLGPNGAGKSTLMRVICGIFEQSYGSIWINGLDTRIYREELQSLI 290 Query: 77 GYLPQDFGYYPDFTAGEFMLYVAALKGI-SPEKARIRSKELLALVGLTEVSAKKIRTFSG 135 G+LPQ+FG Y + T+ EF+ Y A LKGI + R R +L V + E +KI +FSG Sbjct: 291 GFLPQEFGTYENMTSWEFLDYQAILKGIVDGDLRRERLDYVLKAVHMYERKDEKIGSFSG 350 Query: 136 GMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSKDKIVILSTHIVSDIE 195 GMKQR+GIA +L+ PRILV+DEPTAGLDP+ER+ FRNL+ SKD+IVI STHI+ DI Sbjct: 351 GMKQRIGIALILLHLPRILVVDEPTAGLDPRERIRFRNLLVELSKDRIVIFSTHIIEDIS 410 Query: 196 YISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAK-EAAPAISSSFCVANLHHGDDD 254 + V++I G+L ++ +GKVW+ + K E + S + ++ G D Sbjct: 411 SSCNQVVVINKGELKYFGDPSDMVEMANGKVWQFNIDKTEFEKVLDKSLVIHHIQEG--D 468 Query: 255 TVILRVLSDELPMDGAMNEIPTLEDLYLYHFQN 287 T+ +R LS P +GA+ LED YL +N Sbjct: 469 TIRVRYLSVGQPYEGAVEVEANLEDAYLCLLKN 501 >ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera watsonii WH 8501] Length = 297 Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 107/269 (39%), Positives = 165/269 (61%), Gaps = 6/269 (2%) Query: 17 AVDQMTITMKPGVYGLLGANGAGKTTLMRMVCGVLNPTAGDVYLDGKRAADLGEEYRSLL 76 A+ +++T++ G++GLLG NGAGK+TLMR + + +P +G V LDG ++ R L Sbjct: 17 ALQNISLTIESGIFGLLGPNGAGKSTLMRTLATLQDPDSGLVTLDGIDIFQDPQKARGWL 76 Query: 77 GYLPQDFGYYPDFTAGEFMLYVAALKG-ISPEKARIRSKELLALVGLTEVSAKKIRTFSG 135 GYLPQDFG YP+ +A E + +A KG + P + R L LV L E +K+ TFSG Sbjct: 77 GYLPQDFGVYPNVSAEELLDLLAVFKGFVKPRQRREMVAHQLQLVNLYEKRKQKLGTFSG 136 Query: 136 GMKQRLGIAQAVLNDPRILVLDEPTAGLDPKERVHFRNLIANFSKDKIVILSTHIVSDIE 195 GM+QR GIAQA+L +P+++++DEP AGLDP ER+ F+NL+A S+D+++ILSTHIV D+ Sbjct: 137 GMRQRFGIAQALLGEPKLVIVDEPMAGLDPSERIRFQNLLAEISEDRVLILSTHIVEDVA 196 Query: 196 YISDTVLMIKDGKLIINRPADNIAHEMDGKVWRCVVAKEAAPAISSSFCV--ANLHHGDD 253 + + ++ GK++ + ++ GKVW V++ A I+ + + A + G Sbjct: 197 SLCPQMAILNQGKIVTQGCPLQLMEQLHGKVWMKVMSPTEAGTINEEWTIITARMLQGKR 256 Query: 254 DTVILRVLSDELPMDGAMNEIPTLEDLYL 282 +R+LSD P +G P L D+Y Sbjct: 257 ---YVRILSDAAPDEGFQGVEPELNDVYF 282 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 443,708,451 Number of extensions: 18327223 Number of successful extensions: 116587 Number of sequences better than 1.0e-05: 19272 Number of HSP's gapped: 97390 Number of HSP's successfully gapped: 20428 Length of query: 296 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 171 Effective length of database: 417,850,203 Effective search space: 71452384713 Effective search space used: 71452384713 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)