BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0251.0008.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_694223.1| hypothetical protein OB3301 [Oceanobacillus ihe... 166 3e-40 gb|EAK71001.1| unknown [environmental sequence] 116 3e-25 ref|NP_404618.1| putative exported protein [Yersinia pestis] >gi... 113 3e-24 ref|NP_458275.1| putative exported protein [Salmonella enterica ... 112 7e-24 ref|NP_462551.1| putative exported protein [Salmonella typhimuri... 111 8e-24 >ref|NP_694223.1| hypothetical protein OB3301 [Oceanobacillus iheyensis HTE831] dbj|BAC15257.1| hypothetical protein [Oceanobacillus iheyensis HTE831] Length = 170 Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 77/141 (54%), Positives = 104/141 (73%), Gaps = 2/141 (1%) Query: 62 LKQLVHDFSSRSKKAESASISSTQLIVKESDGKSAAYALPADEFFVSIAPYVDQTHPCAT 121 +K ++ D+S+ A SAS+++TQL V++ D K Y +P DEFFVSIAPYV++THPC Sbjct: 31 IKSMIQDYSTDQLTASSASVNATQLTVEDED-KVDIYPMPEDEFFVSIAPYVNETHPCTF 89 Query: 122 HSLTGCQGEMTGEEFNISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGK 181 HSLTGCQGE+ + F+I + D DG V+ D+ TV+S NGF+DLWLPRD+ + TI +D K Sbjct: 90 HSLTGCQGELVKKPFDIYIEDMDGNVVFDD-TVESFDNGFVDLWLPRDQEFNATITYDNK 148 Query: 182 QAESELSTFEKDDTCVTTMQL 202 QA S +STFE D TC+TTM+L Sbjct: 149 QATSTISTFENDPTCITTMRL 169 >gb|EAK71001.1| unknown [environmental sequence] Length = 133 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 50/123 (40%), Positives = 78/123 (63%), Gaps = 5/123 (4%) Query: 85 QLIVKESDGKSAAYALPADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEFNISVTDSD 144 +++ SDGKS++ A+P D+FF+SIAPY++ +HPC H LTGC GE+ + + + D+D Sbjct: 8 RIVATFSDGKSSSVAIPKDQFFLSIAPYINSSHPCTNHVLTGCTGEIINQTMKVVMIDTD 67 Query: 145 GTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQ-----AESELSTFEKDDTCVTT 199 + +K + +Q +GFID W+P+D+ I ++ K A LSTF D TC+TT Sbjct: 68 TGETLIDKKMTTQRDGFIDFWVPKDKNLAFNIYYEAKDGSKRVAREVLSTFNNDRTCITT 127 Query: 200 MQL 202 M+L Sbjct: 128 MKL 130 >ref|NP_404618.1| putative exported protein [Yersinia pestis] ref|NP_670694.1| hypothetical [Yersinia pestis KIM] ref|NP_994698.1| putative exported protein [Yersinia pestis biovar Mediaevails str. 91001] pir||AC0123 probable exported protein YPO1003 [imported] - Yersinia pestis (strain CO92) emb|CAC89846.1| putative exported protein [Yersinia pestis CO92] gb|AAM86945.1| hypothetical [Yersinia pestis KIM] gb|AAS63575.1| putative exported protein [Yersinia pestis biovar Mediaevails str. 91001] Length = 195 Score = 113 bits (282), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 54/125 (43%), Positives = 79/125 (63%), Gaps = 3/125 (2%) Query: 78 SASISSTQLIVKESDGKSAAYALPADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEFN 137 SAS++ T+LI+ SDG+ D F++S APY++QTHPC HSL+GC+GE+ F Sbjct: 72 SASVTHTELIL--SDGQQKFVYPLGDRFYLSFAPYINQTHPCFNHSLSGCRGELANTPFE 129 Query: 138 ISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTCV 197 + +TD+ G VIM + V S NGFI +WLPR+ + + + G A S +T + TC+ Sbjct: 130 VKITDNSGKVIMHQQ-VTSYQNGFIGVWLPRNIEGTLEVSYQGLTAVSPFATGAESQTCL 188 Query: 198 TTMQL 202 TT+QL Sbjct: 189 TTLQL 193 >ref|NP_458275.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] ref|NP_807487.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] pir||AF0981 probable exported protein STY4152 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) emb|CAD07978.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi] gb|AAO71347.1| putative exported protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] Length = 179 Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 5/126 (3%) Query: 78 SASISSTQLIVKESDGKSAAYALP-ADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEF 136 SASI+ST+L K SDG+ Y LP D+F++S APY +THPC HSL+GCQGEM + F Sbjct: 57 SASITSTEL--KLSDGEQI-YTLPLGDKFYLSFAPYEWRTHPCFNHSLSGCQGEMPNKPF 113 Query: 137 NISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTC 196 + VTDS G VI+ K ++S NGFI +WLPR+ + + ++GK A ++T + TC Sbjct: 114 TVKVTDSKGAVIV-QKEMQSYRNGFIGVWLPRNMEGTLEVSYNGKTASHAIATRDDSQTC 172 Query: 197 VTTMQL 202 +T + L Sbjct: 173 LTELPL 178 >ref|NP_462551.1| putative exported protein [Salmonella typhimurium LT2] gb|AAL22510.1| putative periplasmic or exported protein [Salmonella typhimurium LT2] Length = 179 Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 83/126 (65%), Gaps = 5/126 (3%) Query: 78 SASISSTQLIVKESDGKSAAYALP-ADEFFVSIAPYVDQTHPCATHSLTGCQGEMTGEEF 136 SASI+ST+L K SDG+ Y LP D+F++S APY +THPC HSL+GCQGEM + F Sbjct: 57 SASITSTEL--KLSDGEQI-YTLPLGDKFYLSFAPYEWRTHPCFNHSLSGCQGEMPNKPF 113 Query: 137 NISVTDSDGTVIMDNKTVKSQPNGFIDLWLPRDRTYQVTIEHDGKQAESELSTFEKDDTC 196 + VTDS G VI+ K ++S NGFI +WLPR+ + + ++GK A ++T + TC Sbjct: 114 TVKVTDSKGAVIV-QKEMQSYRNGFIGVWLPRNMEGTLEVSYNGKTASHAIATSDDSQTC 172 Query: 197 VTTMQL 202 +T + L Sbjct: 173 LTELPL 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.311 0.126 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 260,325,730 Number of extensions: 9256892 Number of successful extensions: 16733 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 16725 Number of HSP's successfully gapped: 12 Length of query: 203 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 83 Effective length of database: 431,425,698 Effective search space: 35808332934 Effective search space used: 35808332934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 123 (52.0 bits)