BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0010.p
         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388913.1| similar to hypothetical proteins [Bacillus subt...   108   4e-23
gb|EAB63134.1| unknown [environmental sequence]                        86   4e-16
ref|NP_470109.1| similar to alcohol dehydrogenase [Listeria inno...    79   3e-14
gb|EAK65483.1| unknown [environmental sequence]                        79   4e-14
ref|NP_946407.1| putative dehydrogenase (zinc-binding alcohol de...    77   8e-14

>ref|NP_388913.1| similar to hypothetical proteins [Bacillus subtilis]
 pir||E69831 conserved hypothetical protein yhfP - Bacillus subtilis
 emb|CAA74539.1| hypothetical protein [Bacillus subtilis]
 emb|CAB12872.1| yhfP [Bacillus subtilis subsp. subtilis str. 168]
          Length = 330

 Score =  108 bits (270), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 64/77 (83%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           VPATV PFILRGVSLLGID+V CP++ R  +WERM+SDLKP++L  +VDREV+L E P A
Sbjct: 254 VPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDLKPDQLLTIVDREVSLEETPGA 313

Query: 61  LEDILTSNTRGRVLVRL 77
           L+DIL +  +GRV+V+L
Sbjct: 314 LKDILQNRIQGRVIVKL 330


>gb|EAB63134.1| unknown [environmental sequence]
          Length = 264

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 58/74 (78%), Gaps = 1/74 (1%)

Query: 2   PATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAAL 61
           P+TV+PFILRGV+L GID+V CP++ RI+ WER+ASDL  E LD++++  ++L+E+    
Sbjct: 188 PSTVMPFILRGVTLAGIDSVYCPLKDRIKAWERLASDLNMEHLDSMINI-ISLSEVGETT 246

Query: 62  EDILTSNTRGRVLV 75
           +++L+  T GR++V
Sbjct: 247 QNMLSGKTHGRIIV 260


>ref|NP_470109.1| similar to alcohol dehydrogenase [Listeria innocua]
 pir||AG1528 alcohol dehydrogenase homolog lin0767 [imported] - Listeria innocua
           (strain Clip11262)
 emb|CAC95999.1| lin0767 [Listeria innocua]
          Length = 329

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 1/74 (1%)

Query: 4   TVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAALED 63
           TV PFILRG+ L GID+V CP+ +R +IW+R+A+D K   L+ L   E+  +ELPAAL  
Sbjct: 256 TVFPFILRGIQLFGIDSVLCPMPKRERIWKRLATDFKLTNLNELAT-EINFSELPAALHQ 314

Query: 64  ILTSNTRGRVLVRL 77
           I+     GR LV++
Sbjct: 315 IMNGGITGRYLVKI 328


>gb|EAK65483.1| unknown [environmental sequence]
          Length = 334

 Score = 78.6 bits (192), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/75 (48%), Positives = 50/75 (66%)

Query: 4   TVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAALED 63
           TV+PFILRGVS+LGI+  AC +  R  +W+R+ SDL P  LD +V   V L +L +  ED
Sbjct: 255 TVMPFILRGVSVLGINAPACTMPIRTHLWDRLISDLAPNHLDKIVTNIVKLEDLSSVFED 314

Query: 64  ILTSNTRGRVLVRLS 78
           +L+  T GR +V +S
Sbjct: 315 MLSGKTVGRTVVSIS 329


>ref|NP_946407.1| putative dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH
           quinone oxidoreductase, oxidoreductase)
           [Rhodopseudomonas palustris CGA009]
 emb|CAE26499.1| putative dehydrogenase (zinc-binding alcohol dehydrogenase, NADPH
           quinone oxidoreductase, oxidoreductase)
           [Rhodopseudomonas palustris CGA009]
          Length = 328

 Score = 77.4 bits (189), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 1   VPATVLPFILRGVSLLGIDTVACPIEQRIQIWERMASDLKPERLDALVDREVTLTELPAA 60
           +P++V PFILRGV L GID+V CP+ +R + WER+ASDL P +L A + +E+ L ++  A
Sbjct: 252 LPSSVAPFILRGVCLYGIDSVMCPLSERKRAWERLASDLDPAKL-AEITQEIGLDQVIDA 310

Query: 61  LEDILTSNTRGRVLVRLS 78
              +L    RGR++V++S
Sbjct: 311 GAKVLAGQVRGRIVVKIS 328


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 99,662,909
Number of extensions: 3108058
Number of successful extensions: 18007
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 18046
Number of HSP's successfully gapped: 127
Length of query: 78
Length of database: 757,237,578
Length adjustment: 48
Effective length of query: 30
Effective length of database: 626,912,826
Effective search space: 18807384780
Effective search space used: 18807384780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)