BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0005.p
         (88 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_349082.1| Predicted acetyltransferase [Clostridium acetob...    66   2e-10
gb|EAK56664.1| unknown [environmental sequence]                        64   1e-09
ref|NP_902622.1| conserved hypothetical protein [Chromobacterium...    63   2e-09
gb|EAJ61628.1| unknown [environmental sequence]                        63   2e-09
gb|EAH37692.1| unknown [environmental sequence]                        63   2e-09

>ref|NP_349082.1| Predicted acetyltransferase [Clostridium acetobutylicum]
 pir||C97204 probable acetyltransferase [imported] - Clostridium acetobutylicum
 gb|AAK80422.1| Predicted acetyltransferase [Clostridium acetobutylicum]
          Length = 140

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 4/83 (4%)

Query: 1   MMGIICQDLVGDCRPFMVIENVVVSSRARRQGLGKKLIAALEAIAHERDCYYIMFVSGEK 60
           ++GI C+ L+    PF+VIE+V+V    R +G+G+KL+ AL+  A+ ++C Y + VS   
Sbjct: 59  VLGICCKGLM---FPFLVIEDVIVKEEIRGKGVGRKLMKALDEFANRKNCSYAILVSSGF 115

Query: 61  RKEAHIFYEAMGYREEKVEGYRK 83
           R+ AH FYE +G+++  V G+RK
Sbjct: 116 REGAHKFYERVGFKDS-VRGFRK 137


>gb|EAK56664.1| unknown [environmental sequence]
          Length = 163

 Score = 63.9 bits (154), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)

Query: 2   MGIICQDLVGDCRPFMVIENVVVSSRARRQGLGKKLIAALEAIAHERDCYYIMFVSGEKR 61
           +G++   L    RPF ++E+VV +S  RR+G+ ++L+    A+A ++DCY +M +SGE R
Sbjct: 64  LGVVA-TLTNGGRPFGMVEHVVTASAFRRRGISRQLLTHALALAWQQDCYKVMLLSGEGR 122

Query: 62  KEAHIFYEAMGYREEKVEGY 81
           + AH  Y ++G++    +G+
Sbjct: 123 EAAHRLYASLGFKAGIEKGF 142


>ref|NP_902622.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
 gb|AAQ60620.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
           12472]
          Length = 161

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 5   ICQDLVGDCRPFMVIENVVVSSRARRQGLGKKLIAALEAIAHERDCYYIMFVSGEKRKEA 64
            C+D++   +PF V+ENVVV +R R +GLG  L+   E  +  RDC  IM +S   R++A
Sbjct: 72  FCEDVMYGAQPFAVLENVVVDARWRGRGLGAALLREAERRSLARDCSKIMLLSSAGREDA 131

Query: 65  HIFYEAMGYREEKVEGYRKH 84
           H F+   G+R +   G+ K+
Sbjct: 132 HRFFLRAGFRGDAKRGFVKY 151


>gb|EAJ61628.1| unknown [environmental sequence]
          Length = 149

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 50/83 (60%)

Query: 5   ICQDLVGDCRPFMVIENVVVSSRARRQGLGKKLIAALEAIAHERDCYYIMFVSGEKRKEA 64
           +C D++   +PF V+ENV+V + AR  G+G  L  A+EA   + +C  IM +S  +R ++
Sbjct: 62  LCSDVMFRQQPFAVVENVIVDAVARGLGVGSTLFKAIEAFCFKSNCSKIMLLSSVQRSDS 121

Query: 65  HIFYEAMGYREEKVEGYRKHLSS 87
           H ++E  G++     G+ K+ S+
Sbjct: 122 HTYFEKQGFKGSVKRGFVKYRSA 144


>gb|EAH37692.1| unknown [environmental sequence]
          Length = 126

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%)

Query: 5   ICQDLVGDCRPFMVIENVVVSSRARRQGLGKKLIAALEAIAHERDCYYIMFVSGEKRKEA 64
           IC  L    +PF +IE+V+ +   RR+GL +K+I     IA  ++CY +M +SGE R  A
Sbjct: 43  ICPTLTNAAKPFGIIEHVITAEAYRRRGLSEKVIERALDIAWRQNCYKVMLLSGESRTAA 102

Query: 65  HIFYEAMGYREEKVEGY 81
           H  YE +G++     G+
Sbjct: 103 HKLYEKIGFQSGIERGF 119


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.326    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 120,550,525
Number of extensions: 3779331
Number of successful extensions: 10755
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 10769
Number of HSP's successfully gapped: 10
Length of query: 88
Length of database: 757,237,578
Length adjustment: 57
Effective length of query: 31
Effective length of database: 602,476,935
Effective search space: 18676784985
Effective search space used: 18676784985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 120 (50.8 bits)