BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0250.0002.p (240 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_971101.1| ABC transporter, ATP-binding protein [Treponema... 269 4e-71 ref|NP_830350.1| Daunorubicin resistance ATP-binding protein drr... 253 4e-66 ref|NP_654463.1| ABC_tran, ABC transporter [Bacillus anthracis A... 251 8e-66 ref|NP_561098.1| probable ABC-transport protein [Clostridium per... 250 2e-65 ref|NP_293929.1| ABC transporter, ATP-binding protein [Deinococc... 243 2e-63 >ref|NP_971101.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] gb|AAS10982.1| ABC transporter, ATP-binding protein [Treponema denticola ATCC 35405] Length = 261 Score = 269 bits (688), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 125/200 (62%), Positives = 160/200 (80%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 I+EGE VGYIGPNGAGKS+T+KV+ GILTPDSG C I G VPWK RVE+V IGVVFGQR Sbjct: 45 ISEGETVGYIGPNGAGKSSTIKVLCGILTPDSGTCEIAGLVPWKKRVEYVKNIGVVFGQR 104 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 +QLWWD+PV DSF++LKDIY++P ++ L EL L ++ ++KTP RQLSLGQRM+CE Sbjct: 105 TQLWWDIPVIDSFELLKDIYSVPQNLFQNNLEELINLLELKEIVKTPARQLSLGQRMKCE 164 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 + A+LLH PKILFLDEPTIGLDA+SKL +R F+ E N+ T++LTTHDM DIEA+ ER Sbjct: 165 IAASLLHSPKILFLDEPTIGLDALSKLTVRKFISELNKKNKTTIILTTHDMQDIEAITER 224 Query: 195 VMVIGHGQLLYDGRLGGLQE 214 +++I G++L DG L +++ Sbjct: 225 IILIDKGRILLDGTLKDIKK 244 >ref|NP_830350.1| Daunorubicin resistance ATP-binding protein drrA [Bacillus cereus ATCC 14579] gb|AAP07551.1| Daunorubicin resistance ATP-binding protein drrA [Bacillus cereus ATCC 14579] Length = 337 Score = 253 bits (645), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 120/226 (53%), Positives = 158/226 (69%), Gaps = 2/226 (0%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 + +GE+VGYIG NGAGKSTT+K+++GILTP SG+ T+ G P R E V IGVVFGQR Sbjct: 48 VKQGEMVGYIGENGAGKSTTIKMLTGILTPTSGQITVNGMNPHNQREEFVRTIGVVFGQR 107 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 SQLWWD+ V +SF +LK +Y + YK + + TL + LL PVR+LSLGQRMRCE Sbjct: 108 SQLWWDIAVQESFRLLKKVYGVSDAQYKEHMEHVIETLDIGPLLDKPVRKLSLGQRMRCE 167 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 L AAL+H P +LFLDEPTIGLD + KL +R FLKE N Y T++LTTHD+ DIEALCER Sbjct: 168 LAAALIHNPPLLFLDEPTIGLDVLVKLKIREFLKEMNERYKTTILLTTHDITDIEALCER 227 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPEVITKVNTDAMIAAMYNDLSLV 240 V+++ G ++YDG L L+ ++ E +++ + Y LS+V Sbjct: 228 VIMLDEGNIMYDGSLNNLRTQWGAE--KEIHFQFVAPVSYQALSMV 271 >ref|NP_654463.1| ABC_tran, ABC transporter [Bacillus anthracis A2012] ref|NP_843067.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] ref|NP_976914.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAP24553.1| ABC transporter, ATP-binding protein [Bacillus anthracis str. Ames] gb|AAS39522.1| ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 337 Score = 251 bits (642), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 120/226 (53%), Positives = 158/226 (69%), Gaps = 2/226 (0%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 + +GE+VGYIG NGAGKSTT+K+++GILTP SG+ + G P K R E V IGVVFGQR Sbjct: 48 VKQGEMVGYIGENGAGKSTTIKMLTGILTPTSGDILVNGMNPHKQREEFVRTIGVVFGQR 107 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 SQLWWD+ V +SF +LK +Y + YK + + TL + LL PVR+LSLGQRMRCE Sbjct: 108 SQLWWDIAVQESFRLLKKVYGVSDAQYKEHMEHVIETLDIGPLLDKPVRKLSLGQRMRCE 167 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 L AAL+H P +LFLDEPTIGLD + KL +R FLKE N Y T++LTTHD+ DIEALCER Sbjct: 168 LAAALIHNPPLLFLDEPTIGLDVLVKLKIREFLKEMNERYKTTILLTTHDITDIEALCER 227 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPEVITKVNTDAMIAAMYNDLSLV 240 V+++ G ++YDG L L+ ++ E +++ + Y LS+V Sbjct: 228 VIMLDEGNIMYDGSLNNLRTQWGAE--KEIHFQFVAPVSYQALSMV 271 >ref|NP_561098.1| probable ABC-transport protein [Clostridium perfringens] dbj|BAB79888.1| probable ABC-transport protein [Clostridium perfringens str. 13] Length = 341 Score = 250 bits (638), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 152/203 (74%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 I GE+VGYIG NGAGKSTT+K+M+GILTP SG+ + G+VP+K R ++ IGVVFGQR Sbjct: 45 IKSGEIVGYIGSNGAGKSTTIKMMTGILTPSSGQVLVNGRVPYKEREKNAKDIGVVFGQR 104 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 +QLWWD+ ++++F +LKDIY+IP Y+ + L L +E + PVR LSLGQRMR + Sbjct: 105 TQLWWDLALSETFTILKDIYSIPDEVYEKNMKFLNKVLDLEEFMTRPVRTLSLGQRMRGD 164 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 L A+L+H PKIL+LDEPTIGLD V K +RT +KE N+ +G T++LTTHD+ DIE LC+R Sbjct: 165 LAASLIHNPKILYLDEPTIGLDVVVKEKVRTAIKEINKEFGTTVILTTHDLSDIEELCKR 224 Query: 195 VMVIGHGQLLYDGRLGGLQEKYA 217 +++I G +YDG L +++KY Sbjct: 225 IIIIDKGTKIYDGSLDDIKKKYG 247 >ref|NP_293929.1| ABC transporter, ATP-binding protein [Deinococcus radiodurans] pir||G75548 ABC transporter, ATP-binding protein - Deinococcus radiodurans (strain R1) gb|AAF09790.1| ABC transporter, ATP-binding protein [Deinococcus radiodurans] Length = 354 Score = 243 bits (621), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 149/205 (72%) Query: 15 IAEGELVGYIGPNGAGKSTTVKVMSGILTPDSGECTIMGKVPWKNRVEHVSKIGVVFGQR 74 I GE+VGY+GPNGAGKSTT+KV++G+L PDSGE + G VPWK R +HV+++G VFGQR Sbjct: 69 IPAGEIVGYLGPNGAGKSTTIKVLTGLLVPDSGEVRVGGLVPWKQRRQHVARLGAVFGQR 128 Query: 75 SQLWWDVPVADSFDVLKDIYAIPAGDYKTRLTELTATLGVEALLKTPVRQLSLGQRMRCE 134 + LWWD+PV +S ++L+ +Y +PA + L T L + L TP R LSLGQRMR + Sbjct: 129 TTLWWDLPVRESLELLRHVYRVPAARFAENLAGFTELLELGPFLNTPARALSLGQRMRAD 188 Query: 135 LVAALLHRPKILFLDEPTIGLDAVSKLALRTFLKEENRNYGVTMVLTTHDMDDIEALCER 194 L AALLH P++LFLDEPT+GLD V+K +R F+K N GVT++LTTHD+ D+E L R Sbjct: 189 LAAALLHDPELLFLDEPTVGLDVVAKERIREFVKAVNAERGVTVLLTTHDLGDVERLARR 248 Query: 195 VMVIGHGQLLYDGRLGGLQEKYAPE 219 VM+I G+LL+DG L LQ +Y E Sbjct: 249 VMMIDTGRLLFDGPLAELQARYGGE 273 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 343,173,685 Number of extensions: 13334295 Number of successful extensions: 94331 Number of sequences better than 1.0e-05: 14858 Number of HSP's gapped: 81664 Number of HSP's successfully gapped: 15643 Length of query: 240 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 118 Effective length of database: 425,995,500 Effective search space: 50267469000 Effective search space used: 50267469000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 124 (52.4 bits)