BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0029.p (141 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388406.1| ydeM [Bacillus subtilis] >gi|7474957|pir||G6977... 190 1e-47 ref|NP_692187.1| hypothetical protein OB1266 [Oceanobacillus ihe... 160 6e-39 pir||T44120 conserved hypothetical protein [imported] - Staphylo... 154 4e-37 ref|NP_370564.1| conserved hypothetical protein [Staphylococcus ... 154 4e-37 dbj|BAA94333.1| hypothetical protein [Staphylococcus aureus] 154 5e-37 >ref|NP_388406.1| ydeM [Bacillus subtilis] pir||G69778 hypothetical protein ydeM - Bacillus subtilis dbj|BAA19360.1| FUNCTION UNKNOWN. [Bacillus subtilis] emb|CAB12332.1| ydeM [Bacillus subtilis subsp. subtilis str. 168] Length = 141 Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/141 (64%), Positives = 107/141 (75%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK EF GQVF FA EFDPQYMH+DEEKA +GRFNGIIASGIQT+A Sbjct: 1 MKLDEFTIGQVFKTKSLKVSKDDIMRFAGEFDPQYMHVDEEKASKGRFNGIIASGIQTLA 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLW+E G YGDDIIAGT MNH+ FIKPVYP+DEL T+VEV + K+N G +TV L Sbjct: 61 ISFKLWIEEGFYGDDIIAGTEMNHMTFIKPVYPDDELFTIVEVLDKQPKRNELGILTVLL 120 Query: 121 STFNQKDEKVFEGELTVLVKQ 141 ST+NQK+ KVFEGEL+VL+K+ Sbjct: 121 STYNQKEVKVFEGELSVLIKR 141 >ref|NP_692187.1| hypothetical protein OB1266 [Oceanobacillus iheyensis HTE831] dbj|BAC13222.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 141 Score = 160 bits (406), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 77/140 (55%), Positives = 99/140 (70%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MKF E GQVF FA+EFDPQYMHLDE+KA++G FNGIIASG+ T+A Sbjct: 1 MKFTELSLGQVFTTKSIKVTKENITRFASEFDPQYMHLDEKKAEEGMFNGIIASGMHTLA 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE YG+D+IAGT MN++KFIKPV+P+D L +V+V +K+ K G +TV L Sbjct: 61 LSFKLWVEEEIYGEDVIAGTQMNNVKFIKPVFPDDLLFVIVKVIDIKKLKKDQGILTVLL 120 Query: 121 STFNQKDEKVFEGELTVLVK 140 TFN +DEKV EL+ ++K Sbjct: 121 ETFNDRDEKVLNVELSAIMK 140 >pir||T44120 conserved hypothetical protein [imported] - Staphylococcus aureus (fragment) Length = 147 Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 97/139 (69%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK+ +F G+ F FA FDPQYMH+D+EKA+Q RF GIIASG+ T++ Sbjct: 6 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS 65 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE G YG++++AGT MN++KFIKPVYP + L+ + E+T K K G VTV L Sbjct: 66 ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL 125 Query: 121 STFNQKDEKVFEGELTVLV 139 ST+N+ +E VF+GE+T L+ Sbjct: 126 STYNENEEIVFKGEVTALI 144 >ref|NP_370564.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_373277.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_644845.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] pir||F89762 conserved hypothetical protein SA0037 [imported] - Staphylococcus aureus (strain N315) emb|CAA73543.1| ORF142 [Staphylococcus sciuri] emb|CAA73548.1| ORF142 [Staphylococcus sciuri] emb|CAA74377.1| hypothetical protein [Staphylococcus aureus] dbj|BAA82222.2| unnamed protein product [Staphylococcus aureus] dbj|BAB41255.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB47625.1| hypothetical protein [Staphylococcus aureus] dbj|BAB56202.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB72114.1| hypothetical protein [Staphylococcus aureus] dbj|BAB72133.1| hypothetical protein [Staphylococcus aureus] dbj|BAB93895.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] dbj|BAC57477.1| hypothetical protein [Staphylococcus aureus] gb|AAQ75793.1| unknown; hypothetical protein [Staphylococcus aureus] Length = 142 Score = 154 bits (390), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 97/139 (69%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK+ +F G+ F FA FDPQYMH+D+EKA+Q RF GIIASG+ T++ Sbjct: 1 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE G YG++++AGT MN++KFIKPVYP + L+ + E+T K K G VTV L Sbjct: 61 ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL 120 Query: 121 STFNQKDEKVFEGELTVLV 139 ST+N+ +E VF+GE+T L+ Sbjct: 121 STYNENEEIVFKGEVTALI 139 >dbj|BAA94333.1| hypothetical protein [Staphylococcus aureus] Length = 142 Score = 154 bits (390), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 71/139 (51%), Positives = 97/139 (69%) Query: 1 MKFHEFYAGQVFXXXXXXXXXXXXXGFAAEFDPQYMHLDEEKAKQGRFNGIIASGIQTMA 60 MK+ +F G+ F FA FDPQYMH+D+EKA+Q RF GIIASG+ T++ Sbjct: 1 MKYDDFIVGETFKTKSLHITEEEIIQFATTFDPQYMHIDKEKAEQSRFKGIIASGMHTLS 60 Query: 61 VSFKLWVETGSYGDDIIAGTAMNHLKFIKPVYPEDELHTVVEVTGLKEKKNGTGSVTVWL 120 +SFKLWVE G YG++++AGT MN++KFIKPVYP + L+ + E+T K K G VTV L Sbjct: 61 ISFKLWVEEGKYGEEVVAGTQMNNVKFIKPVYPGNTLYVIAEITNKKSIKKENGLVTVSL 120 Query: 121 STFNQKDEKVFEGELTVLV 139 ST+N+ +E VF+GE+T L+ Sbjct: 121 STYNENEEIVFKGEVTALI 139 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 204,021,550 Number of extensions: 7884284 Number of successful extensions: 15427 Number of sequences better than 1.0e-05: 64 Number of HSP's gapped: 15452 Number of HSP's successfully gapped: 64 Length of query: 141 Length of database: 757,237,578 Length adjustment: 102 Effective length of query: 39 Effective length of database: 480,297,480 Effective search space: 18731601720 Effective search space used: 18731601720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 120 (50.8 bits)