BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0019.p (427 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_387897.1| similar to hypothetical proteins [Bacillus subt... 568 e-160 ref|NP_690945.1| hypothetical protein OB0024 [Oceanobacillus ihe... 522 e-147 ref|NP_243158.1| BH2292~unknown conserved protein [Bacillus halo... 483 e-135 ref|NP_833339.1| spore peptidoglycan hydrolase (N-acetylglucosam... 468 e-130 ref|NP_979924.1| glycosyl hydrolase, family 18 [Bacillus cereus ... 468 e-130 >ref|NP_387897.1| similar to hypothetical proteins [Bacillus subtilis] sp|P37531|YAAH_BACSU Hypothetical protein yaaH pir||S66046 conserved hypothetical protein yaaH - Bacillus subtilis dbj|BAA05252.1| unknown [Bacillus subtilis] emb|CAB11792.1| yaaH [Bacillus subtilis subsp. subtilis str. 168] Length = 427 Score = 568 bits (1463), Expect = e-160, Method: Compositional matrix adjust. Identities = 266/424 (62%), Positives = 325/424 (76%), Gaps = 1/424 (0%) Query: 5 VVQAGQSLYGIAQAYGVNADEISEANKLSAPGRLVVGQTLVIPITGMYYWVQPGDSLYTI 64 +V+ G +L IA Y ++I+E N++ P LVVGQT+VIPI G +Y V+ GD+L +I Sbjct: 1 MVKQGDTLSAIASQYRTTTNDITETNEIPNPDSLVVGQTIVIPIAGQFYDVKRGDTLTSI 60 Query: 65 ARRFGVGMSDLAASNQLSLNQPLQIGFRLYIPPGPKRKAEINAYIEPRG-EVSQSLQNAA 123 AR+F ++LA N++ LN LQIGFRLYIPP PKR E NAY+EPRG +VS++LQ AA Sbjct: 61 ARQFNTTAAELARVNRIQLNTVLQIGFRLYIPPAPKRDIESNAYLEPRGNQVSENLQQAA 120 Query: 124 AEAAPHLTYLAPFSFRVQRDGSLEAPPLDDLVSTAAQHRVTMMMVVTNLENARFSSGLGR 183 EA+P+LTYL FSF+ QR+G+L APPL +L S T+MM++TNLEN FS LGR Sbjct: 121 REASPYLTYLGAFSFQAQRNGTLVAPPLTNLRSITESQNTTLMMIITNLENQAFSDELGR 180 Query: 184 IILNDQAVQSRLLENIISTAKKLGFRDIHFDFEFLRPEDREAYNAFLRKAADRIHQEGFL 243 I+LND+ V+ RLL I+ A++ GFRDIHFDFE+LRP+DREAYN FLR+A D H+EG Sbjct: 181 ILLNDETVKRRLLNEIVENARRYGFRDIHFDFEYLRPQDREAYNQFLREARDLFHREGLE 240 Query: 244 LSTALAPKTSRTQTGAWYTAHDYKVHGEVADFVIIMTYEWGYSGGPPMPVSPIGPVRKVL 303 +STALAPKTS TQ G WY AHDY+ HGE+ DFV++MTYEWGYSGGPP VSPIGPVR V+ Sbjct: 241 ISTALAPKTSATQQGRWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPQAVSPIGPVRDVI 300 Query: 304 EYALSEMPGSKIMMGQNLYGYDWTLPYVAGGPYAKAISPQAAIDLARTRNAAIQYDYKDQ 363 EYAL+EMP +KI+MGQNLYGYDWTLPY AGG A+A+SPQ AI +A NA+IQYD Q Sbjct: 301 EYALTEMPANKIVMGQNLYGYDWTLPYTAGGTPARAVSPQQAIVIADQNNASIQYDQTAQ 360 Query: 364 APHFDYTDDAGKPHKVWFEDARSIQAKFTLLKELGLRGISYWKLGLPFPQNWLLIEDNFQ 423 AP F YTD + H+VWFEDARSIQAKF L+KEL LRGISYWKLGL FPQNWLL+ D F Sbjct: 361 APFFRYTDAENRRHEVWFEDARSIQAKFNLIKELNLRGISYWKLGLSFPQNWLLLSDQFN 420 Query: 424 VVKR 427 VVK+ Sbjct: 421 VVKK 424 >ref|NP_690945.1| hypothetical protein OB0024 [Oceanobacillus iheyensis HTE831] dbj|BAC11980.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 429 Score = 522 bits (1345), Expect = e-147, Method: Compositional matrix adjust. Identities = 253/427 (59%), Positives = 311/427 (72%), Gaps = 1/427 (0%) Query: 1 MQIHVVQAGQSLYGIAQAYGVNADEISEANKLSAPGRLVVGQTLVIPITGMYYWVQPGDS 60 MQIHVVQ G S+Y IA Y + +I EAN L++P LV+GQ LVIPI G +Y+VQPGD+ Sbjct: 1 MQIHVVQQGDSVYQIANTYESSVADIIEANDLTSPNALVIGQALVIPIVGQFYFVQPGDT 60 Query: 61 LYTIARRFGVGMSDLAASNQLSLNQPLQIGFRLYIPPGPKRKAEINAYIEPRGE-VSQSL 119 L +IA +FG + ++A N +S+NQ L G R+YIPP KR AY+EP G+ VSQ+L Sbjct: 61 LTSIANQFGFTVQEIARINGISINQTLSPGMRIYIPPIEKRPITSYAYVEPFGDTVSQTL 120 Query: 120 QNAAAEAAPHLTYLAPFSFRVQRDGSLEAPPLDDLVSTAAQHRVTMMMVVTNLENARFSS 179 + AA P+LTYLA FS++V RDG+L+APP +L TA + M MV+TNLE FS Sbjct: 121 ETAAENRTPYLTYLALFSYQVNRDGTLKAPPAGNLFQTANANDTAMAMVITNLEEGAFSD 180 Query: 180 GLGRIILNDQAVQSRLLENIISTAKKLGFRDIHFDFEFLRPEDREAYNAFLRKAADRIHQ 239 LG II+ AVQ+ LL II+TA + GFRD+HFD EFL EDREAYN FLR A R+ Q Sbjct: 181 ELGHIIVTVSAVQNTLLTEIINTALQQGFRDVHFDLEFLPGEDREAYNQFLRTAKARLSQ 240 Query: 240 EGFLLSTALAPKTSRTQTGAWYTAHDYKVHGEVADFVIIMTYEWGYSGGPPMPVSPIGPV 299 EG L+STALAPKTS TQ+G WY AHDY HGE+ DFV++MTYEWGYS GPPM VSP+ V Sbjct: 241 EGLLVSTALAPKTSDTQSGQWYEAHDYAAHGEIVDFVVLMTYEWGYSYGPPMAVSPLNSV 300 Query: 300 RKVLEYALSEMPGSKIMMGQNLYGYDWTLPYVAGGPYAKAISPQAAIDLARTRNAAIQYD 359 R V+EYA+S +P KI+MGQNLYGYDWTLP+V GG A+A+SPQ AI +A NAAIQ+D Sbjct: 301 RNVIEYAVSAIPPEKILMGQNLYGYDWTLPFVEGGGPARAVSPQQAIQIAIENNAAIQFD 360 Query: 360 YKDQAPHFDYTDDAGKPHKVWFEDARSIQAKFTLLKELGLRGISYWKLGLPFPQNWLLIE 419 QAP F YTD++G H+VWFEDARSIQ KF L++E L GI+YWKLGL FPQNWLL+ Sbjct: 361 PVAQAPFFTYTDNSGANHEVWFEDARSIQGKFDLIREFNLLGIAYWKLGLAFPQNWLLLN 420 Query: 420 DNFQVVK 426 D F + K Sbjct: 421 DQFTITK 427 >ref|NP_243158.1| BH2292~unknown conserved protein [Bacillus halodurans] pir||D83936 hypothetical protein BH2292 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06011.1| BH2292~unknown conserved protein [Bacillus halodurans] Length = 426 Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 232/426 (54%), Positives = 304/426 (71%), Gaps = 1/426 (0%) Query: 1 MQIHVVQAGQSLYGIAQAYGVNADEISEANKLSAPGRLVVGQTLVIPITGMYYWVQPGDS 60 MQIHVVQ +S++ IA YGVNA+E+ AN++ P LV GQT+VIPI G YY+VQPGDS Sbjct: 1 MQIHVVQENESVFSIANLYGVNANELIMANEIPNPDTLVPGQTMVIPIVGRYYFVQPGDS 60 Query: 61 LYTIARRFGVGMSDLAASNQLSLNQPLQIGFRLYIPPGPKRKAEINAYIEPRGEVSQSLQ 120 LY+IARRF + +A NQL++N+PLQ G RLY+PP PK + E+N YIEPR + ++ Sbjct: 61 LYSIARRFNTTVEQIAQINQLNVNEPLQPGLRLYLPPQPKTEIEVNGYIEPRPPL-ETEP 119 Query: 121 NAAAEAAPHLTYLAPFSFRVQRDGSLEAPPLDDLVSTAAQHRVTMMMVVTNLENARFSSG 180 + P LTY++ FS++V R+G L P + + +A + ++V+TN+E F+ Sbjct: 120 RVISRIGPWLTYVSVFSYQVTREGELIPVPDEPSLEASALFAIAPVLVITNIEGDNFNPE 179 Query: 181 LGRIILNDQAVQSRLLENIISTAKKLGFRDIHFDFEFLRPEDREAYNAFLRKAADRIHQE 240 LG IL +A+Q ++L IS ++ G+R ++ DFE LRPEDRE YNAFLRKAADR+ Sbjct: 180 LGEAILQSEALQDKVLTEAISVMEEKGYRSLNIDFEHLRPEDREPYNAFLRKAADRLRAT 239 Query: 241 GFLLSTALAPKTSRTQTGAWYTAHDYKVHGEVADFVIIMTYEWGYSGGPPMPVSPIGPVR 300 G+ LSTALAPK Q GAWY AHDY HGE+ DF ++MTYEWG+SGGPPM V+P+ VR Sbjct: 240 GYTLSTALAPKVGPEQVGAWYEAHDYPAHGEIVDFTVLMTYEWGWSGGPPMAVAPLDQVR 299 Query: 301 KVLEYALSEMPGSKIMMGQNLYGYDWTLPYVAGGPYAKAISPQAAIDLARTRNAAIQYDY 360 +V+EYA+S MP +K+MMG LYGYDWTLPY GG +A+AISPQ A+ +A A IQYD Sbjct: 300 RVVEYAVSVMPANKVMMGIPLYGYDWTLPYEPGGEFARAISPQEALLIAARYGATIQYDE 359 Query: 361 KDQAPHFDYTDDAGKPHKVWFEDARSIQAKFTLLKELGLRGISYWKLGLPFPQNWLLIED 420 Q+P F Y D G+ H+VWFEDARSI+AKF L+KELGLRG+SYW L + PQNWLLI++ Sbjct: 360 TAQSPFFTYRDVEGRDHEVWFEDARSIEAKFQLVKELGLRGVSYWVLRIEIPQNWLLIQE 419 Query: 421 NFQVVK 426 +F V K Sbjct: 420 HFSVRK 425 >ref|NP_833339.1| spore peptidoglycan hydrolase (N-acetylglucosaminidase) [Bacillus cereus ATCC 14579] gb|AAP10540.1| spore peptidoglycan hydrolase (N-acetylglucosaminidase) [Bacillus cereus ATCC 14579] Length = 430 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 224/429 (52%), Positives = 296/429 (68%), Gaps = 3/429 (0%) Query: 1 MQIHVVQAGQSLYGIAQAYGVNADEISEANKLSAPGRLVVGQTLVIPITGMYYWVQPGDS 60 +QI V++G S+Y +A YG DEI + N L+ LVVGQ L++ G Y+VQPGDS Sbjct: 2 IQIVTVRSGDSVYSLASKYGSTPDEIVKDNGLNPAETLVVGQALIVNTKGNNYYVQPGDS 61 Query: 61 LYTIARRFGVGMSDLAASNQLSLNQPLQIGFRLYIPPGPKRKAEINAYIEPRG-EVSQSL 119 LY I++ + V ++ LA N LSL L +G +LY+P G KR E AY++P + +SL Sbjct: 62 LYRISQTYNVPLASLAKVNNLSLKSILHVGQQLYVPKGTKRTVESIAYLQPSTIPIKESL 121 Query: 120 QNAAAEAAPHLTYLAPFSFRVQRDGSLEAPP-LDDLVSTAAQHRVTMMMVVTNLENARFS 178 NA P LTYLA FSF +RDG+L+ P + + A Q + M+V+TN+EN FS Sbjct: 122 VNATRAINPFLTYLAYFSFEAKRDGTLKEPTETAKIANIATQGKTIPMLVITNIENGNFS 181 Query: 179 SGLGRIILNDQAVQSRLLENIISTAKKLGFRDIHFDFEFLRPEDREAYNAFLRKAADRIH 238 + L +IL D +Q++ + NI+ TA+K G RDIHFDFE + PEDREAYN FLR R+ Sbjct: 182 ADLTSVILRDATIQNKFITNILQTAQKYGMRDIHFDFESVAPEDREAYNRFLRNVKTRL- 240 Query: 239 QEGFLLSTALAPKTSRTQTGAWYTAHDYKVHGEVADFVIIMTYEWGYSGGPPMPVSPIGP 298 G+ LST L PKTS Q G ++ AHDYK G++ DFV+IMTY+WG+ GGPPM +SPIGP Sbjct: 241 PSGYTLSTTLVPKTSSNQKGKFFEAHDYKAQGQIVDFVVIMTYDWGWQGGPPMAISPIGP 300 Query: 299 VRKVLEYALSEMPGSKIMMGQNLYGYDWTLPYVAGGPYAKAISPQAAIDLARTRNAAIQY 358 V++VL+YA S+MP KIMMGQNLYG+DW LP+ G P AKAIS AA+ LAR N I+Y Sbjct: 301 VKEVLQYAKSQMPPQKIMMGQNLYGFDWKLPFKQGNPPAKAISSVAAVTLARKYNVPIRY 360 Query: 359 DYKDQAPHFDYTDDAGKPHKVWFEDARSIQAKFTLLKELGLRGISYWKLGLPFPQNWLLI 418 D+ QAPHF+Y D+ G H+VWFED+RS+Q+KF L+KE G+ GISYWK+GLPFPQNW L+ Sbjct: 361 DFTAQAPHFNYFDENGVQHEVWFEDSRSVQSKFNLMKEQGIGGISYWKIGLPFPQNWRLL 420 Query: 419 EDNFQVVKR 427 +NF + K+ Sbjct: 421 VENFTITKK 429 >ref|NP_979924.1| glycosyl hydrolase, family 18 [Bacillus cereus ATCC 10987] gb|AAS42532.1| glycosyl hydrolase, family 18 [Bacillus cereus ATCC 10987] Length = 430 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 226/429 (52%), Positives = 295/429 (68%), Gaps = 3/429 (0%) Query: 1 MQIHVVQAGQSLYGIAQAYGVNADEISEANKLSAPGRLVVGQTLVIPITGMYYWVQPGDS 60 +QI V++G S+Y +A YG DEI + N L+ LVVGQ L++ G Y+VQPGDS Sbjct: 2 IQIVTVRSGDSVYSLASKYGSTPDEIVKDNGLNPAETLVVGQALIVNTKGNNYYVQPGDS 61 Query: 61 LYTIARRFGVGMSDLAASNQLSLNQPLQIGFRLYIPPGPKRKAEINAYIEPRG-EVSQSL 119 LY I++ + V ++ LA N LSL L +G +LYIP G KR E AY++P + +SL Sbjct: 62 LYRISQTYNVPLASLAKVNNLSLKSILHVGQQLYIPKGTKRAVESIAYLQPSTIPIKESL 121 Query: 120 QNAAAEAAPHLTYLAPFSFRVQRDGSLEAPP-LDDLVSTAAQHRVTMMMVVTNLENARFS 178 NA P LTYLA FSF +RDG+L+ P + + A Q M+V+TN+EN FS Sbjct: 122 VNATRAINPFLTYLAYFSFEAKRDGTLKEPTETAKIANIATQGNTIPMLVITNIENGNFS 181 Query: 179 SGLGRIILNDQAVQSRLLENIISTAKKLGFRDIHFDFEFLRPEDREAYNAFLRKAADRIH 238 + L +IL D +Q++ + NI+ TA+K G RDIHFDFE + PEDREAYN FLR R+ Sbjct: 182 ADLTSVILRDATIQNKFITNILQTAEKYGMRDIHFDFESVAPEDREAYNRFLRNVKTRL- 240 Query: 239 QEGFLLSTALAPKTSRTQTGAWYTAHDYKVHGEVADFVIIMTYEWGYSGGPPMPVSPIGP 298 G+ LST L PKTS Q G ++ AHDYK G++ DFV+IMTY+WG+ GGPPM +SPIGP Sbjct: 241 PNGYTLSTTLVPKTSSNQKGKFFEAHDYKAQGQIVDFVVIMTYDWGWQGGPPMAISPIGP 300 Query: 299 VRKVLEYALSEMPGSKIMMGQNLYGYDWTLPYVAGGPYAKAISPQAAIDLARTRNAAIQY 358 V++VL+YA S+MP KIMMGQNLYG+DW LP+ G P AKA+S AA+ LAR N I+Y Sbjct: 301 VKEVLQYAKSQMPPQKIMMGQNLYGFDWKLPFKQGNPPAKAVSSVAAVALARKYNVPIRY 360 Query: 359 DYKDQAPHFDYTDDAGKPHKVWFEDARSIQAKFTLLKELGLRGISYWKLGLPFPQNWLLI 418 D+ QAPHF+Y D+ G H+VWFEDARSIQ+KF L+KE G+ GISYWK+GLPFPQNW L+ Sbjct: 361 DFTAQAPHFNYFDENGVQHEVWFEDARSIQSKFNLMKEQGIGGISYWKIGLPFPQNWRLL 420 Query: 419 EDNFQVVKR 427 +NF + K+ Sbjct: 421 VENFTITKK 429 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.136 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 637,883,499 Number of extensions: 26187549 Number of successful extensions: 61659 Number of sequences better than 1.0e-05: 99 Number of HSP's gapped: 61704 Number of HSP's successfully gapped: 107 Length of query: 427 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 299 Effective length of database: 409,704,906 Effective search space: 122501766894 Effective search space used: 122501766894 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)