BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0005.p (1032 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halo... 647 0.0 ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halo... 533 e-149 ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase... 348 4e-94 ref|ZP_00065796.1| COG0784: FOG: CheY-like receiver [Microbulbif... 291 5e-77 ref|ZP_00071137.1| COG0642: Signal transduction histidine kinase... 268 5e-70 >ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halodurans] pir||E83901 hypothetical protein BH2013 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05732.1| BH2013~unknown conserved protein [Bacillus halodurans] Length = 914 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/917 (40%), Positives = 538/917 (58%), Gaps = 22/917 (2%) Query: 132 ISRIGNASSVYVNGQLLASSGHPSSDPGKHQAQNVPYTVTI-PAGSPTLDLVIEVSHDAG 190 + RI ++ +Y NG+L+ P+ ++ +P V + P + + L+I VS Sbjct: 1 MQRIFDSFLLYANGELVEERRAPTITESVARSSLIPSIVRVTPDENGWIHLMIAVSSSEN 60 Query: 191 --KGGIERAIRFGTVDAIQQRNSXXXXXXXXXXXXXFINALYGVILRLLSSNK-GLSYFA 247 GG+ ++IRFGT A+ + + FI+ +Y IL + K L YF Sbjct: 61 IYDGGVLKSIRFGTEVAMNREHWSTSAAQLMVAAIMFIHGIYACILFFIRPKKIELLYFM 120 Query: 248 FFMIFTLFSVLISDDRLLFQWFHMGDAWEIKIVYLTYIGVNAFMCLLINSLFPS-RVPKV 306 ++ + FSVL+SD+RLL QW + W IK+ YL+Y G++ F L + LF + + + Sbjct: 121 VAVLLSAFSVLVSDERLLLQWVPLNYEWFIKLAYLSYTGLSLFFLLFVRYLFSNYKRNQS 180 Query: 307 TTHIIAFCWTLYALFILISPSSYIQAXXXXXXXXXXXXXXXXGHILRRAIQQKE-DVIFL 365 I FC LYALFILI+P++ I+ ++ + I +KE D +FL Sbjct: 181 VRWISGFC-ALYALFILIAPATTIREWTIMLLFVLAIPFTTIILLVVQVILKKERDSLFL 239 Query: 366 LLACIGIGINILWSAFMH--------LSPENELIHYPXXXXXXXXXXXXXXXXXXXXXID 417 LLA I + +ILWS+F + + + YP D Sbjct: 240 LLAAISVASSILWSSFTGRVKSFEWGILSQIDYSFYPVDLTLAFLCFSTFWFIRFFRAND 299 Query: 418 QSLLLAGKLQLEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEII 477 L KLQ E +KD+FL NTSHELRNPL G+ + Q +++ + + P+ ++ +E++ Sbjct: 300 DKADLVTKLQKEHVKKDQFLANTSHELRNPLHGMINIAQGVVEQEGGRLAPESRQNLELL 359 Query: 478 KKVSSRMSFMLDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADI 537 V RMS++L+DLID+T++K++ + L +P L + V+ V+++ + M++ K +++ +I Sbjct: 360 MTVGRRMSYLLNDLIDVTKMKQKKVTLTKQPTNLLAAVTTVVNVQRFMVEAKNLRIEVNI 419 Query: 538 EDTFPAVQADEQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEA 597 FP V ADE R+ QILFNL+HNA+K+T++G I + A K A ++V+DTGIG+ EE Sbjct: 420 PHDFPLVYADETRLGQILFNLVHNAIKYTEEGTIVIEAKVKKKRAVIRVKDTGIGMDEET 479 Query: 598 LLQIFHPYEQADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGD 657 +IFHPYEQ +GGFGLGLSICR LV +H GT+ +S+ + ++F FTLPL Sbjct: 480 QKRIFHPYEQGAKEHYHENGGFGLGLSICRDLVSMHNGTLAVQSAPSKGSIFTFTLPLAS 539 Query: 658 GNPAEE---DFQPSSLTNLSVPLDEIAAAAEPPVERGISPNESGAPACRLLIVDDDAVNL 714 + EE D + +DE AA+ P + E ++LIVDDDAVNL Sbjct: 540 SSEREEKQRDAGQEVVRFREHKIDEEVAASHLPTSAPVR-TEGLERKPKILIVDDDAVNL 598 Query: 715 NVLAQMLETEGYVIDAVTSAELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNIS 774 +VL ++ +E Y I+AVTS E L Q +DL++ DVMMP MSGYELT IR +F+IS Sbjct: 599 HVLKNIICSEAYTIEAVTSGEEVLDRLD-QGWDLILADVMMPSMSGYELTREIRNQFSIS 657 Query: 775 ELPILLLTARVRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESA 834 ELP+LLLTAR + E++ TGF +GANDY+ KP+DA ELK R+ A+ +LK SI +RLRME+A Sbjct: 658 ELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDALELKVRIRAVIELKHSIQERLRMEAA 717 Query: 835 WLQSQIQPHFLFNTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELS 894 WLQ+QIQPHFLFNTLN+IA+L ID +M LL++F +LR SFD +N LVP+ HEL+ Sbjct: 718 WLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLEKFGQFLRKSFDGQNIHSLVPITHELA 777 Query: 895 LVRSYVYIEKERFGSRLTVVWNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVN 954 L SYVYIE+ERFG RL V W+ + + +PPLSIQPLVENA+KHG+L + GG V + Sbjct: 778 LTESYVYIEQERFGERLKVHWDKDEHVVCNLPPLSIQPLVENALKHGVLKKPEGGNVHIR 837 Query: 955 VCRLAEMVXXXXXXXXXXXXXXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQ 1014 + + E V L+ +LT + SGIG++N + RL Q FG GL ++ Sbjct: 838 IKKQEETVKIMITDDGVGMDKATLNNVLT--RKPDQVSGIGMLNTDLRLKQLFGKGLFVE 895 Query: 1015 SSLDQGTCVSFQIPYQK 1031 S +GT +SF +P K Sbjct: 896 SQPGKGTSISFYVPLNK 912 >ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halodurans] pir||C83843 hypothetical protein BH1547 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05266.1| BH1547~unknown conserved protein [Bacillus halodurans] Length = 661 Score = 533 bits (1372), Expect = e-149, Method: Compositional matrix adjust. Identities = 299/669 (44%), Positives = 414/669 (61%), Gaps = 16/669 (2%) Query: 364 FLLLACIGIGINILWSAFMHLSPENELIHYPXXXXXXXXXXXXXXXXXXXXXIDQSLLLA 423 LLL+ I + N W F ++ +++ YP ++ L Sbjct: 1 MLLLSLIALTSNFCWWGFFVVTG-IKVLFYPFDLIISTTCFAAVWFRRYFTIQRKTDKLV 59 Query: 424 GKLQLEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSR 483 +L+ +K KD+FL NTSHELRNPL I + + IL+ + ++ K ++I+ V R Sbjct: 60 DQLKRANKTKDDFLANTSHELRNPLHSILNLSEGILEREKRSLNEKSVADLKIVLSVGRR 119 Query: 484 MSFMLDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPA 543 MSFML+DL+D LKE T L ++ + + ++ +GVL+M + M++GKP++L I + P Sbjct: 120 MSFMLNDLLDAMSLKENTPRLMLQHLSIHTIANGVLEMFRFMVEGKPIRLNNQIPENIPN 179 Query: 544 VQADEQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQIFH 603 V ADE RVIQILFNL+HNAVKFT +G I++ A K + + DTGIG+ ++AL ++F Sbjct: 180 VLADESRVIQILFNLVHNAVKFTREGEISLEAYVKDDRVYIAIRDTGIGMDKDALKRVFD 239 Query: 604 PYEQADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAEE 663 PYEQ + GGFGLGLSI ++LVELHGG +T S+ G+ ++F F+L + + Sbjct: 240 PYEQVRSEETMVEGGFGLGLSISQKLVELHGGILTVRSTPGQGSVFTFSLQISKQTGLAD 299 Query: 664 DFQPSSLTNLSVPLDEIAAA--AEPPVERGISPNESGAPACRLLIVDDDAVNLNVLAQML 721 D + L S +E+AAA ++P ISP A R+L+VDD+ VNL V+A +L Sbjct: 300 D---NHLLVQSDRENELAAATLSKPT----ISP---VAYRPRILVVDDEPVNLKVIASIL 349 Query: 722 ETEGYVIDAVTSAELALAETKRQRYDLVITDVMMPHMSGYELTELIRERFNISELPILLL 781 E Y + V S E A+A + +DLV+ DVMMP MSGYELT+ IR+RF ++ELPILL+ Sbjct: 350 ANEAYEVKTVISGEEAIAVLDTKEWDLVVADVMMPKMSGYELTKNIRQRFTLTELPILLI 409 Query: 782 TARVRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQIQ 841 TAR R EDI GFRAGANDY+ KPV+ EL+AR+ ALT+ K SI D+LRME AWLQ+QIQ Sbjct: 410 TARSRPEDIENGFRAGANDYLTKPVNLLELRARIKALTEAKQSIRDQLRMEGAWLQAQIQ 469 Query: 842 PHFLFNTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSYVY 901 PHFLFNTLN+I AL ID +MQ LL+ F+++L+ F F N L P+E ELS V+SY+Y Sbjct: 470 PHFLFNTLNAILALSEIDIKRMQKLLEVFADFLKNKFTFTNLDELAPIEIELSTVQSYLY 529 Query: 902 IEKERFGSRLTVVWNIESGIDILIPPLSIQPLVENAIKHGLLSRNRGGTVSVNVCRLAEM 961 IEKERF RL V W +E ++IP +IQPLVENA+KHG L+R+ GG +++ + Sbjct: 530 IEKERFAQRLNVRWEVEDCKALMIPLFTIQPLVENAVKHG-LNRSSGGEITIKIKNEDTY 588 Query: 962 VXXXXXXXXXXXXXXYLSQLLTYSNRSSSRSGIGLININRRLMQQFGTGLDIQSSLDQGT 1021 V + LLT R S+RSGIGL N + RL + +G GL I+S L GT Sbjct: 589 VKVTVTDNGVGMDENIVQHLLT--ERPSARSGIGLRNTDMRLKRHYGKGLHIESKLGVGT 646 Query: 1022 CVSFQIPYQ 1030 VSF + Q Sbjct: 647 SVSFLVQKQ 655 >ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase [Desulfitobacterium hafniense] Length = 561 Score = 348 bits (893), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 201/502 (40%), Positives = 286/502 (56%), Gaps = 13/502 (2%) Query: 422 LAGKLQLEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVS 481 L+ +L + DK KD+FL TSHEL+ PL GI + Q +LD + Q E + +I + Sbjct: 15 LSDRLVVLDKLKDDFLAKTSHELKTPLNGIINISQSLLDGAGGSLSRAQAEDIRLITSIG 74 Query: 482 SRMSFMLDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTF 541 R+S ++ D++D ++LK I L I + + V +D+ + ++ G+P+ L I Sbjct: 75 KRLSTLVYDILDYSKLKVMDIQLHIVCLDVHQVAESTVDIFRYLIKGRPITLENKIPPNQ 134 Query: 542 PAVQADEQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPEEALLQI 601 + ADE R+ QI NLL N++K+T+ G I++ + G +QV DTGIGIP + L I Sbjct: 135 HLIWADENRLKQIFSNLLDNSLKYTELGSISLSCRQDGGFLWIQVSDTGIGIPADKLKDI 194 Query: 602 FHPYEQADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPA 661 F PYEQ G GLGL+I +QL+ELHGG I A S G+ T F F++PL N Sbjct: 195 FAPYEQLGEQSANQRG-IGLGLTITQQLIELHGGQIVARSEPGQGTSFTFSIPLAKDNKP 253 Query: 662 EEDFQPSSLTNLSVPLDEIAA-AAEPPVERGISPNESGAPACRLLIVDDDAVNLNVLAQM 720 + S+P D + +E + +L+VDD+ NL L + Sbjct: 254 QR----------SLPGDYVGYDGSESLATEALPQTVHVGGEFSILVVDDEFSNLKALMNI 303 Query: 721 LETEGYVIDAVTSAELALAETKRQ-RYDLVITDVMMPHMSGYELTELIRERFNISELPIL 779 L Y + + E AL K YDL I DVMMP +SGYE+ IRE ++ ELPIL Sbjct: 304 LTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGYEVCRKIRETYSPLELPIL 363 Query: 780 LLTARVRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRLRMESAWLQSQ 839 LLTA+ ED+ GFRAGAND+++KP + ELK RV L QLK S+D L+ E+A+LQ+Q Sbjct: 364 LLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQLKNSMDLLLKKETAFLQAQ 423 Query: 840 IQPHFLFNTLNSIAALGMIDFNKMQTLLDEFSNYLRLSFDFKNASPLVPLEHELSLVRSY 899 I+PHFLFN LN+I + + K LL E +LR SFDF + + LV +E EL LV++Y Sbjct: 424 IRPHFLFNALNTIYSFCYTNPGKAGELLAELGVFLRSSFDFSSTASLVTVEKELRLVKAY 483 Query: 900 VYIEKERFGSRLTVVWNIESGI 921 V IE+ RFGS+L V + +E + Sbjct: 484 VAIEEARFGSQLEVEYAVEPSV 505 >ref|ZP_00065796.1| COG0784: FOG: CheY-like receiver [Microbulbifer degradans 2-40] Length = 1535 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 165/415 (39%), Positives = 245/415 (59%), Gaps = 12/415 (2%) Query: 416 IDQSLLLAGKLQLEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVE 475 ++Q + +L+ DK KDEFL NTSHELR PL GI + + ++D + P+ K ++ + Sbjct: 864 VEQERSVVRRLKQLDKLKDEFLANTSHELRTPLNGIVGLAESLMDGVTGPLSHKTKQNLA 923 Query: 476 IIKKVSSRMSFMLDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRA 535 +I R++ ++DDL+D +LK + + L K V + +V VL + ++ KP++L Sbjct: 924 MIVSSGKRLAGLVDDLLDFAQLKHRGMALNKKAVDIHVLVDVVLSLTLPIIGAKPIELVN 983 Query: 536 DIEDTFPAVQADEQRVIQILFNLLHNAVKFTDKGFITVRAVRKGPMAEVQVEDTGIGIPE 595 ++ P V ADE R++QIL NL+ NAVKFTD+G +T+ A +G + V DTGIG+PE Sbjct: 984 NVSKQLPKVAADESRLLQILHNLVGNAVKFTDEGSVTISAEVQGEEICISVADTGIGVPE 1043 Query: 596 EALLQIFHPYEQADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPL 655 +IF + Q + R GG GLGLS+ +QLVELHGGTI S+LG+ F F LPL Sbjct: 1044 NRFEEIFDSFRQLEGASNRVYGGTGLGLSVTKQLVELHGGTIGVRSTLGKGATFYFYLPL 1103 Query: 656 GDGNPAEEDFQPSSLTNL-----SVPLDEIAAAAEPPVE-RGISPNESG-APACRLLIVD 708 E D Q + S P +E+ PVE R + ++S A +LIVD Sbjct: 1104 NAAIEDEADGQEPETNSAYHAQPSCPEEEL----NEPVEIRAQAESKSDTARTYHILIVD 1159 Query: 709 DDAVNLNVLAQMLETEGYVIDAVTSAELALAETKRQ-RYDLVITDVMMPHMSGYELTELI 767 D+ VN VLA L + Y + V S A+ + + DL++ D+MMP MSGYE + + Sbjct: 1160 DEPVNRKVLANYLSLKYYTVHEVRSGMEAITYVRNGPKVDLILLDIMMPKMSGYEACKQL 1219 Query: 768 RERFNISELPILLLTARVRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLK 822 R++++ +ELPI+LLTAR + D++TGF +GAND++ KP+ EL ARVH QL+ Sbjct: 1220 RQQYSANELPIILLTARSQVSDLVTGFNSGANDFITKPIAKEELLARVHTHLQLR 1274 >ref|ZP_00071137.1| COG0642: Signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 268 bits (685), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 160/428 (37%), Positives = 247/428 (57%), Gaps = 21/428 (4%) Query: 425 KLQLEDKRKDEFLVNTSHELRNPLQGISTMLQVILDDQSHPVHPKQQERVEIIKKVSSRM 484 +LQ D+ KDEFL NTSHELR PL GI + I D + P+ Q++ + +I R+ Sbjct: 449 ELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPISELQKKNLSMIVGSGHRL 508 Query: 485 SFMLDDLIDITRLKEQTIPLEIKPVRLQSVVSGVLDMIKVMLDGKPVQLRADIEDTFPAV 544 + +++D++D ++L+ +I L+I V ++ V VL +++L+GK +QL I P V Sbjct: 509 ANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILEGKDLQLINAISSDLPPV 568 Query: 545 QADEQRVIQILFNLLHNAVKFTDKGFITVRA--VRKGPMAEVQVEDTGIGIPEEALLQIF 602 +ADE R+ QI+ NL+ NA+KFTD G + V A + + V DTGIGIPE+ IF Sbjct: 569 EADENRIQQIMHNLVGNAIKFTDSGVVKVSAELIDVNKKMAITVSDTGIGIPEDKYEAIF 628 Query: 603 HPYEQADNHFKRASGGFGLGLSICRQLVELHGGTITAESSLGEKTLFRFTLPLGDGNPAE 662 +EQ D +R GG GLGL I ++LVELHGGTI+ +S++G + F FTL + + Sbjct: 629 KSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGIGSEFTFTLNVSEKPAQN 688 Query: 663 EDFQPSSLTNLS-VPLDEIAAAAEPP---------VERGISPNESGAPA-CRLLIVDDDA 711 + + SSL +S + D +A + P V+ P+ S + ++LIVDD+ Sbjct: 689 KIIESSSLNQMSLLDTDYLAPSVPEPTYLESEINQVQTSSLPSSSKKESEFQILIVDDEP 748 Query: 712 VNLNVLAQMLETEGYVIDAVTSAELALAETKRQRY--DLVITDVMMPHMSGYELTELIRE 769 VNL +L+ L Y + + + AL + Q + DL++ DVMMP M+GYE+T+ +RE Sbjct: 749 VNLTLLSNQLSLHNYQVIQANNGQKAL-DILAQDFLPDLILLDVMMPGMTGYEVTQKVRE 807 Query: 770 RFNISELPILLLTARVRTEDILTGFRAGANDYVKKPVDAWELKARVHALTQLKTSIDDRL 829 + + +LPI++LTA+ R D++ G GANDY+ KP EL AR+ +K +L Sbjct: 808 TWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKELLARIKTHINIK-----KL 862 Query: 830 RMESAWLQ 837 R E A ++ Sbjct: 863 RTEKAHIR 870 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,367,178,228 Number of extensions: 54118735 Number of successful extensions: 159908 Number of sequences better than 1.0e-05: 8793 Number of HSP's gapped: 149734 Number of HSP's successfully gapped: 9258 Length of query: 1032 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 896 Effective length of database: 387,984,114 Effective search space: 347633766144 Effective search space used: 347633766144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)