BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0032.p
         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_242426.1| BH1560~unknown conserved protein [Bacillus halo...   100   7e-21
ref|NP_471399.1| similar to unknown proteins [Listeria innocua] ...   100   2e-20
ref|NP_692749.1| hypothetical protein OB1828 [Oceanobacillus ihe...    99   4e-20
ref|NP_465475.1| similar to unknown proteins [Listeria monocytog...    98   6e-20
ref|NP_980419.1| conserved hypothetical protein [Bacillus cereus...    96   2e-19

>ref|NP_242426.1| BH1560~unknown conserved protein [Bacillus halodurans]
 sp|Q9KCL1|SCPA_BACHD Segregation and condensation protein A
 pir||H83844 hypothetical protein BH1560 [imported] - Bacillus halodurans
          (strain C-125)
 dbj|BAB05279.1| BH1560~unknown conserved protein [Bacillus halodurans]
          Length = 260

 Score =  100 bits (250), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 57/63 (90%)

Query: 6  KLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAATL 65
          KL+TFEGPLDLLLHLI++AE+DI DIPV+ ITEQYM Y+ TMQEL+LD+ SE+LVMAATL
Sbjct: 7  KLDTFEGPLDLLLHLINQAEVDIYDIPVALITEQYMAYIHTMQELQLDVASEYLVMAATL 66

Query: 66 LSI 68
          L I
Sbjct: 67 LQI 69


>ref|NP_471399.1| similar to unknown proteins [Listeria innocua]
 sp|Q92A57|SCPA_LISIN Segregation and condensation protein A
 pir||AG1690 hypothetical protein homolog lin2065 [imported] - Listeria
          innocua (strain Clip11262)
 emb|CAC97295.1| lin2065 [Listeria innocua]
          Length = 249

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 60/68 (88%)

Query: 1  VTVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLV 60
          V + +K+E FEGPLDLLLHLI + E+DI DIP++EIT+QYME++ TMQE+ELD+ SE+LV
Sbjct: 2  VEMNFKVEAFEGPLDLLLHLIGQLEVDIYDIPMAEITDQYMEFVHTMQEMELDVASEYLV 61

Query: 61 MAATLLSI 68
          MAATLL+I
Sbjct: 62 MAATLLAI 69


>ref|NP_692749.1| hypothetical protein OB1828 [Oceanobacillus iheyensis HTE831]
 sp|Q7ZAM4|SCPA_OCEIH Segregation and condensation protein A
 dbj|BAC13784.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
          Length = 249

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 58/63 (92%)

Query: 6  KLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAATL 65
          KL+TFEGPLDLLLHLI++ EIDI DIPV++IT+QYMEY+ TMQ LEL+I SE+LVMA+TL
Sbjct: 8  KLDTFEGPLDLLLHLINQFEIDIYDIPVAQITQQYMEYIHTMQHLELNIASEYLVMASTL 67

Query: 66 LSI 68
          L+I
Sbjct: 68 LAI 70


>ref|NP_465475.1| similar to unknown proteins [Listeria monocytogenes EGD-e]
 sp|Q8Y5V4|SCPA_LISMO Segregation and condensation protein A
 pir||AG1318 hypothetical protein lmo1951 [imported] - Listeria monocytogenes
          (strain EGD-e)
 emb|CAD00029.1| lmo1951 [Listeria monocytogenes]
          Length = 249

 Score = 98.2 bits (243), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 60/68 (88%)

Query: 1  VTVLYKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLV 60
          V + +K++ FEGPLDLLLHLI + E+DI DIP++EIT+QYME++ TMQE+ELD+ SE+LV
Sbjct: 2  VEMNFKVDAFEGPLDLLLHLIGQLEVDIYDIPMAEITDQYMEFVHTMQEMELDVASEYLV 61

Query: 61 MAATLLSI 68
          MAATLL+I
Sbjct: 62 MAATLLAI 69


>ref|NP_980419.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
 gb|AAS43027.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
          Length = 247

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 56/64 (87%)

Query: 5  YKLETFEGPLDLLLHLIDKAEIDIQDIPVSEITEQYMEYLRTMQELELDITSEFLVMAAT 64
          +K+E FEGPLDLLLHLI + EIDI +IPV+EITEQY+ Y+ TM+EL+LD+ SE+LVMAAT
Sbjct: 5  FKVEAFEGPLDLLLHLIHRYEIDIYNIPVAEITEQYLSYVHTMKELQLDVASEYLVMAAT 64

Query: 65 LLSI 68
          LL I
Sbjct: 65 LLQI 68


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.322    0.137    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 103,118,226
Number of extensions: 2714531
Number of successful extensions: 8675
Number of sequences better than 1.0e-05: 270
Number of HSP's gapped: 8670
Number of HSP's successfully gapped: 270
Length of query: 104
Length of database: 757,237,578
Length adjustment: 71
Effective length of query: 33
Effective length of database: 564,465,549
Effective search space: 18627363117
Effective search space used: 18627363117
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 120 (50.8 bits)