BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0031.p (150 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_471399.1| similar to unknown proteins [Listeria innocua] ... 75 4e-13 ref|NP_815256.1| conserved hypothetical protein [Enterococcus fa... 72 4e-12 ref|NP_658098.1| DUF173, Uncharacterized ACR, COG1354 [Bacillus ... 71 7e-12 ref|NP_833776.1| hypothetical Cytosolic Protein [Bacillus cereus... 71 9e-12 ref|NP_242426.1| BH1560~unknown conserved protein [Bacillus halo... 70 2e-11 >ref|NP_471399.1| similar to unknown proteins [Listeria innocua] sp|Q92A57|SCPA_LISIN Segregation and condensation protein A pir||AG1690 hypothetical protein homolog lin2065 [imported] - Listeria innocua (strain Clip11262) emb|CAC97295.1| lin2065 [Listeria innocua] Length = 249 Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 51/140 (36%), Positives = 79/140 (56%), Gaps = 12/140 (8%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVP----AQIDNTLKGLHTADLIAAFRKALS-KAARRS 56 +L + E+ERS F+K P DL + A++D +L D+++AF K L K + Sbjct: 113 ELKEKEAERSFYFSKPPMDLAEYDEGTKVAELDVSLN-----DMLSAFNKMLRRKKLNKP 167 Query: 57 SYQRITRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKM 116 + RIT EIS+ DR+ V L ++ T R+RF L + E + ++VVTFLA+LELMK Sbjct: 168 LHTRITTQEISIDDRMNSVLGKLHQQ-TNHRLRFDELFE-EQTKEQLVVTFLALLELMKR 225 Query: 117 KAIFCYQEKLFDDIVMEWRG 136 K + Q F D+ ++ +G Sbjct: 226 KLVEVEQSASFADLYVQGKG 245 >ref|NP_815256.1| conserved hypothetical protein [Enterococcus faecalis V583] sp|Q834U4|SCPA_ENTFA Segregation and condensation protein A gb|AAO81326.1| conserved hypothetical protein [Enterococcus faecalis V583] Length = 264 Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 6/133 (4%) Query: 3 LLDMESERSLIFTKEPEDLGPFVPAQIDNTL--KGLHTADLIAAFRKALSKAARRSSYQR 60 L + E ER L +TKEP D+ + + D TL ++T DL AF L K R + Sbjct: 118 LHEKEEERKLYYTKEPMDMDDY--KEEDTTLPPNQINTIDLFLAFHAMLEKKKNRQPVET 175 Query: 61 -ITRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKAI 119 + D++S++++I +S +++ G + F + D ++ EIV TF+A+LELMK AI Sbjct: 176 TVASDDVSIEEKISAISERMRQVQKGKAVSFDSFFDS-YSKQEIVTTFMALLELMKTGAI 234 Query: 120 FCYQEKLFDDIVM 132 + QE + +I++ Sbjct: 235 YAEQENNYSEILL 247 >ref|NP_658098.1| DUF173, Uncharacterized ACR, COG1354 [Bacillus anthracis A2012] ref|NP_846512.1| conserved hypothetical protein [Bacillus anthracis str. Ames] sp|Q81MH0|SCPA_BACAA Segregation and condensation protein A gb|AAP27998.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 247 Score = 71.2 bits (173), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 6/131 (4%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALS-KAARRSSYQR 60 +L + E ER+ ++T+ P D + N + D++AAF+K + K A + R Sbjct: 112 ELKEREQERAQLYTRPPIDFTSLQQEEETNLPLDVTLYDMLAAFQKLMRRKKAEKPVTTR 171 Query: 61 ITRDEISVKDRIRDVSAALQRKGTGGRMRFSAL-LDDEMARHEIVVTFLAILELMKMKAI 119 ITR EI ++ R+ D+ L+ +G GR F L +DDE R +VVTFLA+LELMK + I Sbjct: 172 ITRQEIPIEQRMTDILKQLEIQG--GRQSFYDLFVDDE--REIMVVTFLAVLELMKNQQI 227 Query: 120 FCYQEKLFDDI 130 QE FD+I Sbjct: 228 IIEQEHNFDEI 238 >ref|NP_833776.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] sp|Q812U6|SCPA_BACCR Segregation and condensation protein A gb|AAP10977.1| hypothetical Cytosolic Protein [Bacillus cereus ATCC 14579] Length = 247 Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 6/131 (4%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQIDNTLKGLHTADLIAAFRKALS-KAARRSSYQR 60 +L + E ER+ ++T+ P D + + + D++AAF+K + K A++ R Sbjct: 112 ELKEREQERAQLYTRPPIDFTSLQQEEETSLPLDVTLYDMLAAFQKLMRRKKAKKPVTTR 171 Query: 61 ITRDEISVKDRIRDVSAALQRKGTGGRMRFSAL-LDDEMARHEIVVTFLAILELMKMKAI 119 ITR EI ++ R+ D+ L+ KG GR F L +DDE R +VVTFLA+LELMK + I Sbjct: 172 ITRQEIPIEQRMTDILKQLKIKG--GRQSFYDLFVDDE--REIMVVTFLAVLELMKNQQI 227 Query: 120 FCYQEKLFDDI 130 QE FD+I Sbjct: 228 IIEQEHNFDEI 238 >ref|NP_242426.1| BH1560~unknown conserved protein [Bacillus halodurans] sp|Q9KCL1|SCPA_BACHD Segregation and condensation protein A pir||H83844 hypothetical protein BH1560 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05279.1| BH1560~unknown conserved protein [Bacillus halodurans] Length = 260 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 80/141 (56%), Gaps = 6/141 (4%) Query: 2 QLLDMESERSLIFTKEPEDLGPFVPAQ--IDNTLKGLHTADLIAAFRKALSK-AARRSSY 58 +L + E ERS + T+ P++L ++ + +++G+ D++AA++K L + A R Sbjct: 113 ELKEKEGERSQVHTRLPDNLDDYLTEEERQRQSIQGVTLFDMLAAYQKLLKRRAYSRPRT 172 Query: 59 QRITRDEISVKDRIRDVSAALQRKGTGGRMRFSALLDDEMARHEIVVTFLAILELMKMKA 118 + +E S+ +R+ D+ L++ G+ RF L E R +VVTFLA+LELMK A Sbjct: 173 STVKVEEYSIDERMTDILMDLEK--CNGKCRFQDLFV-EKGRGHMVVTFLAMLELMKTDA 229 Query: 119 IFCYQEKLFDDIVMEWRGGGD 139 I+C Q + F DI + R G + Sbjct: 230 IYCEQNENFADIWIYRREGKN 250 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.137 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 195,617,084 Number of extensions: 6501043 Number of successful extensions: 15616 Number of sequences better than 1.0e-05: 12 Number of HSP's gapped: 15680 Number of HSP's successfully gapped: 12 Length of query: 150 Length of database: 757,237,578 Length adjustment: 109 Effective length of query: 41 Effective length of database: 461,291,787 Effective search space: 18912963267 Effective search space used: 18912963267 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 120 (50.8 bits)