BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0030.p (152 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242427.1| BH1561~unknown conserved protein [Bacillus halo... 160 8e-39 ref|NP_833775.1| Transcriptional regulator, LuxR family [Bacillu... 153 1e-36 ref|NP_658097.1| hypothetical protein predicted by GeneMark [Bac... 151 4e-36 ref|NP_846510.1| conserved hypothetical protein TIGR00281 [Bacil... 151 5e-36 ref|NP_980418.1| transcriptional regulator, putative [Bacillus c... 151 5e-36 >ref|NP_242427.1| BH1561~unknown conserved protein [Bacillus halodurans] sp|Q9KCL0|SCPB_BACHD Segregation and condensation protein B pir||A83845 hypothetical protein BH1561 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05280.1| BH1561~unknown conserved protein [Bacillus halodurans] Length = 197 Score = 160 bits (405), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 80/145 (55%), Positives = 109/145 (75%), Gaps = 3/145 (2%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGL++ ++A +RL+T P+ APYF++LA S ++ LSQAALETLAI+AYRQPITR+E++E Sbjct: 54 RGLRIEEVAHAFRLSTKPELAPYFKKLALSTLQSGLSQAALETLAIIAYRQPITRIEVDE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELPE-PSNFD 123 +RGVKSE+AI TL ++ LI+EVGRA+ GRPILYGTT FL+ FGL LKELP P + D Sbjct: 114 VRGVKSEKAIQTLTSRLLIKEVGRAQGTGRPILYGTTPQFLDHFGLKSLKELPPLPEDID 173 Query: 124 ASTDDLEEETQLLFSKLDSQMTFED 148 S+ + EE L F +++ F + Sbjct: 174 ESS--IGEEADLFFQQMEQGSLFHE 196 >ref|NP_833775.1| Transcriptional regulator, LuxR family [Bacillus cereus ATCC 14579] sp|Q819C8|SCPB_BACCR Segregation and condensation protein B gb|AAP10976.1| Transcriptional regulator, LuxR family [Bacillus cereus ATCC 14579] Length = 190 Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/113 (65%), Positives = 92/113 (81%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGLQ+VQ A YR AT +HA Y+++L +P+ ASLSQAALETLAIVAYRQPITR E+EE Sbjct: 54 RGLQIVQYAKVYRFATKKEHASYYQKLIDTPTAASLSQAALETLAIVAYRQPITRTEMEE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 IRGVK+++A+ TL + LI+E+GRAE GRPILYGTTK FL++FGL L +LP Sbjct: 114 IRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLP 166 >ref|NP_658097.1| hypothetical protein predicted by GeneMark [Bacillus anthracis A2012] sp|Q81MH2|SCPB_BACAA Segregation and condensation protein B Length = 190 Score = 151 bits (382), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 74/113 (65%), Positives = 91/113 (80%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGLQ+VQ A YR AT +HA Y+++L P+ ASLSQAALETLAIVAYRQPITR E+EE Sbjct: 54 RGLQIVQYAKVYRFATKKEHASYYQKLIEIPTAASLSQAALETLAIVAYRQPITRTEMEE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 IRGVK+++A+ TL + LI+E+GRAE GRPILYGTTK FL++FGL L +LP Sbjct: 114 IRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLP 166 >ref|NP_846510.1| conserved hypothetical protein TIGR00281 [Bacillus anthracis str. Ames] gb|AAP27996.1| conserved hypothetical protein TIGR00281 [Bacillus anthracis str. Ames] Length = 146 Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 74/113 (65%), Positives = 91/113 (80%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGLQ+VQ A YR AT +HA Y+++L P+ ASLSQAALETLAIVAYRQPITR E+EE Sbjct: 10 RGLQIVQYAKVYRFATKKEHASYYQKLIEIPTAASLSQAALETLAIVAYRQPITRTEMEE 69 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 IRGVK+++A+ TL + LI+E+GRAE GRPILYGTTK FL++FGL L +LP Sbjct: 70 IRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLP 122 >ref|NP_980418.1| transcriptional regulator, putative [Bacillus cereus ATCC 10987] gb|AAS43026.1| transcriptional regulator, putative [Bacillus cereus ATCC 10987] Length = 190 Score = 151 bits (381), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 74/113 (65%), Positives = 91/113 (80%) Query: 5 RGLQVVQIAGNYRLATLPDHAPYFERLAYSPSRASLSQAALETLAIVAYRQPITRVEIEE 64 RGLQ+VQ A YR AT +HA Y+++L P+ ASLSQAALETLAIVAYRQPITR E+EE Sbjct: 54 RGLQIVQYAKVYRFATKKEHASYYQKLIDIPTAASLSQAALETLAIVAYRQPITRTEMEE 113 Query: 65 IRGVKSERAIHTLNNKDLIQEVGRAEAVGRPILYGTTKSFLESFGLADLKELP 117 IRGVK+++A+ TL + LI+E+GRAE GRPILYGTTK FL++FGL L +LP Sbjct: 114 IRGVKTDKALQTLVSHLLIKEMGRAEGPGRPILYGTTKEFLDTFGLKTLDDLP 166 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.314 0.131 0.353 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 203,789,930 Number of extensions: 7448634 Number of successful extensions: 17201 Number of sequences better than 1.0e-05: 417 Number of HSP's gapped: 16896 Number of HSP's successfully gapped: 417 Length of query: 152 Length of database: 757,237,578 Length adjustment: 111 Effective length of query: 41 Effective length of database: 455,861,589 Effective search space: 18690325149 Effective search space used: 18690325149 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 120 (50.8 bits)