BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0004.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692734.1| hypothetical protein OB1813 [Oceanobacillus ihe... 111 1e-23 ref|NP_242474.1| BH1608~unknown conserved protein [Bacillus halo... 108 6e-23 ref|NP_655387.1| Abi, CAAX amino terminal protease family [Bacil... 98 1e-19 ref|NP_843958.1| CAAX amino terminal protease family protein [Ba... 97 3e-19 ref|NP_977932.1| CAAX amino terminal protease family protein [Ba... 96 4e-19 >ref|NP_692734.1| hypothetical protein OB1813 [Oceanobacillus iheyensis HTE831] dbj|BAC13769.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 188 Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 51/128 (39%), Positives = 86/128 (67%) Query: 68 GLAAIMLIVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQ 127 G A ++++ DF+L + P++S+DDGGIN+ +F +P+ I+ +V++ EEL FRG +Q Sbjct: 61 GTAFVVILFDFILMKVFPKESLDDGGINKRIFENQPISFIVGFTLLVAISEELFFRGTIQ 120 Query: 128 HTFGLYWTSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFS 187 TFG + S+LFA +H+RYL+ + V L+S+ +G+I+ + L I HFIID+ Sbjct: 121 TTFGYVFASLLFAFVHIRYLKKPVLFLSVVLASFFIGWIFERTENLLITITAHFIIDLVL 180 Query: 188 GLVIRYRR 195 GL+IR+++ Sbjct: 181 GLIIRFKK 188 >ref|NP_242474.1| BH1608~unknown conserved protein [Bacillus halodurans] pir||H83850 hypothetical protein BH1608 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05327.1| BH1608~unknown conserved protein [Bacillus halodurans] Length = 198 Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 69/179 (38%), Positives = 100/179 (55%), Gaps = 4/179 (2%) Query: 17 QQLTDKILLLNLYITQGLTLFIGLI---WILLQKRNPIHILNFPDSAQFVYWALGLAAIM 73 +Q+TD+ LL+NLY++Q L I I W I IL F FV G A ++ Sbjct: 9 KQMTDRELLINLYLSQTSMLVIAFILGWWWFGSWDAYIDILRFEPFNIFVLGG-GAAVLV 67 Query: 74 LIVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLY 133 + VD +L VP++ MDDGGINE +F R +HI ++ +V+V EE LFRG +Q GL Sbjct: 68 VTVDIVLYRYVPKEWMDDGGINERVFRNRSTFHIAFLSLVVAVAEETLFRGIIQQQLGLV 127 Query: 134 WTSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIR 192 S++FA++H RYL I + S+ LG +++ +G L I HF ID G+ +R Sbjct: 128 IASLVFALVHFRYLHKPILFISIVAISFLLGVLFLVTGNLLVTIFAHFCIDFLLGIFLR 186 >ref|NP_655387.1| Abi, CAAX amino terminal protease family [Bacillus anthracis A2012] Length = 188 Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 2/180 (1%) Query: 15 DPQQLTDKILLLNLYITQGLTLFIG--LIWILLQKRNPIHILNFPDSAQFVYWALGLAAI 72 + + ++ + + LNLYITQ + + IG L +IL Q + L + + LA Sbjct: 8 NVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDAKEVFNLWKWEPVSILIIGGLLAIG 67 Query: 73 MLIVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGL 132 ++++D++ + PE DDGGIN+ +F + H+LVI ++ EE LFRG VQ FG+ Sbjct: 68 IVLLDYVAMRVFPESXFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVVQTHFGI 127 Query: 133 YWTSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIR 192 S +FAV+H+RY+ +V S+ GY++ +G L+ I HF++D GL +R Sbjct: 128 VIASFVFAVLHIRYITKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFIMGLQLR 187 >ref|NP_843958.1| CAAX amino terminal protease family protein [Bacillus anthracis str. Ames] gb|AAP25444.1| CAAX amino terminal protease family protein [Bacillus anthracis str. Ames] Length = 187 Score = 96.7 bits (239), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 99/180 (55%), Gaps = 2/180 (1%) Query: 15 DPQQLTDKILLLNLYITQGLTLFIG--LIWILLQKRNPIHILNFPDSAQFVYWALGLAAI 72 + + ++ + + LNLYITQ + + IG L +IL Q + L + + LA Sbjct: 7 NVEDMSPQEIRLNLYITQLIIIGIGCLLAYILFQDAKEVFNLWKWEPVSILIIGGLLAIG 66 Query: 73 MLIVDFLLTHIVPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGL 132 ++++D++ + PE DDGGIN+ +F + H+LVI ++ EE LFRG VQ FG+ Sbjct: 67 IVLLDYVAMRVFPESWFDDGGINDKMFRGMSVLHLLVITFLIGFAEEFLFRGVVQTHFGI 126 Query: 133 YWTSILFAVIHVRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIR 192 S +FAV+H+RY+ +V S+ GY++ +G L+ I HF++D GL +R Sbjct: 127 VIASFVFAVLHIRYITKPFLFCFVCFISFVFGYVFEWTGNLFITIFAHFLVDFIMGLQLR 186 >ref|NP_977932.1| CAAX amino terminal protease family protein [Bacillus cereus ATCC 10987] gb|AAS40540.1| CAAX amino terminal protease family protein [Bacillus cereus ATCC 10987] Length = 170 Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/169 (34%), Positives = 95/169 (56%), Gaps = 2/169 (1%) Query: 26 LNLYITQGLTLFIG--LIWILLQKRNPIHILNFPDSAQFVYWALGLAAIMLIVDFLLTHI 83 +NLYITQ + + IG L +IL + ++ L + + LA ++++D++ + Sbjct: 1 MNLYITQFIIIGIGCLLAYILFRDIKSVYSLWKWEPVSILIIGGLLAIGIVLLDYVAMRV 60 Query: 84 VPEDSMDDGGINELLFGKRPLWHILVIAAIVSVCEELLFRGAVQHTFGLYWTSILFAVIH 143 PE DDGGIN+ +F + H+LVI I+ EE LFRG VQ FG+ S +FAV+H Sbjct: 61 FPESWFDDGGINDRMFQGMSVMHLLVITFIIGFAEEFLFRGVVQTHFGIVIASFVFAVLH 120 Query: 144 VRYLRHWIPTGWVFLSSYGLGYIYIHSGTLWAPILCHFIIDVFSGLVIR 192 +RY++ +V S+ GY++ +G L+ I HF++D GL +R Sbjct: 121 IRYIKKPFLFCFVCFISFVFGYVFEWTGBLFITIFAHFLVDFIMGLQLR 169 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.148 0.490 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 289,304,769 Number of extensions: 12050002 Number of successful extensions: 30801 Number of sequences better than 1.0e-05: 14 Number of HSP's gapped: 30825 Number of HSP's successfully gapped: 14 Length of query: 197 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 78 Effective length of database: 434,140,797 Effective search space: 33862982166 Effective search space used: 33862982166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 122 (51.6 bits)