BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0011.p (368 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_977539.1| sensor histidine kinase [Bacillus cereus ATCC 1... 206 7e-52 ref|NP_830904.1| Two-component sensor kinase yvrG [Bacillus cere... 205 1e-51 emb|CAB60253.1| MrsK2 protein [Bacillus sp. HIL-Y85/54728] 204 2e-51 ref|NP_655026.1| HATPase_c, Histidine kinase-like ATPases [Bacil... 203 6e-51 ref|NP_391201.1| similar to two-component sensor histidine kinas... 199 8e-50 >ref|NP_977539.1| sensor histidine kinase [Bacillus cereus ATCC 10987] gb|AAS40147.1| sensor histidine kinase [Bacillus cereus ATCC 10987] Length = 580 Score = 206 bits (524), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 104/319 (32%), Positives = 189/319 (59%), Gaps = 6/319 (1%) Query: 50 ILAVFGLNITACSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGI---FKRNGKLKF 106 IL + + + S+ +G FG PL M W+ +++G +E P + +G F+R+GK K+ Sbjct: 264 ILLIVFVYLVILSIWYGNKFGKPLLHAMRWLKNIAGGKYEEPVSKKGKPIRFRRSGKEKW 323 Query: 107 RYRLYGELIVHIESLSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLN 166 +RL+ ++ +E LS L++ + R+ L+ +++W+ G++HDLKTPL+ + GY+ LL + Sbjct: 324 SFRLFRDVTSSLEHLSITLQKNDAMRQVLQQTREEWITGLTHDLKTPLSSIYGYALLLES 383 Query: 167 EEYSWNADEQRTFLQEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRL 226 ++Y+W + + F + K +++ LI D++L++Q+ + SLP Q +E+ F+Q++ Sbjct: 384 KQYNWTDRDIQQFGSVMKEKSQYMTTLIDDLSLTYQLKNN--SLPAQHVNIEMNQFVQKV 441 Query: 227 TADVGNDPRAVSHLLSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRR 286 N+P + + + ++ +EK R ++N+L+NAV H T + V + Sbjct: 442 LLQFINNPTLQNQNIEFVPSSNKIQYFIEEKWFQRIIENLLVNAVKHNNETTNVIVKL-S 500 Query: 287 EGDESVNITVSDNGTGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFL 346 + + S +++SDNG GMD+ T LF++YYRG N+GTGLG+AI K L+ AH G + Sbjct: 501 QNENSFTLSISDNGKGMDDKTKELLFERYYRGTNTEESNIGTGLGLAITKQLVHAHNGTI 560 Query: 347 TVESEVSKGTAFHISLPVR 365 +++SE+ KGT + P R Sbjct: 561 SIDSELGKGTTIILVFPFR 579 >ref|NP_830904.1| Two-component sensor kinase yvrG [Bacillus cereus ATCC 14579] gb|AAP08105.1| Two-component sensor kinase yvrG [Bacillus cereus ATCC 14579] Length = 580 Score = 205 bits (522), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 106/319 (33%), Positives = 187/319 (58%), Gaps = 6/319 (1%) Query: 50 ILAVFGLNITACSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGI---FKRNGKLKF 106 IL + + + S+ +G FG PL M W+ +++G +E P + +G F+R+GK K+ Sbjct: 264 ILLIVFVYLVILSIWYGNKFGKPLLHAMRWLKNIAGGKYEEPISKKGKPVRFRRSGKEKW 323 Query: 107 RYRLYGELIVHIESLSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLN 166 +RL+ ++ +E LS LK+ + R+ L+ +++W+ G++HDLKTPL+ + GY+ LL + Sbjct: 324 SFRLFRDVTSSLEHLSITLKKNDAMRQVLQQTREEWITGLTHDLKTPLSSIYGYALLLES 383 Query: 167 EEYSWNADEQRTFLQEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRL 226 +Y+W + + F + K +++ LI D++L++Q+ + SLP Q VE+ F+Q++ Sbjct: 384 NQYNWTDRDIQQFGSVMKEKSQYMTTLIDDLSLTYQLKNN--SLPAQHVNVEINQFVQKV 441 Query: 227 TADVGNDPRAVSHLLSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRR 286 N+P + + + ++ +EK R ++N+L+NAV H T + V + + Sbjct: 442 LLQFINNPTLQNQNIEFVPSSNKIQYFIEEKWFQRIIENLLVNAVKHNNETTTVIVKLSQ 501 Query: 287 EGDESVNITVSDNGTGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFL 346 + S +++SD+G GMDE T LF++YYRG N+GTGLG+AI K L+ AH G + Sbjct: 502 NAN-SFTLSISDDGKGMDEKTKELLFERYYRGTNTEESNIGTGLGLAITKQLVHAHNGTI 560 Query: 347 TVESEVSKGTAFHISLPVR 365 +V+S + KGT + P R Sbjct: 561 SVDSALGKGTTIILVFPFR 579 >emb|CAB60253.1| MrsK2 protein [Bacillus sp. HIL-Y85/54728] Length = 479 Score = 204 bits (520), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 108/319 (33%), Positives = 182/319 (57%), Gaps = 5/319 (1%) Query: 47 DLYILAVFGLNITACSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGIFKRNGKLKF 106 +L+I+++ I ++ +G G+PL F++SWI +LS +E P + + K Sbjct: 154 NLWIVSIIMAGI-VIAIFYGKKLGAPLLFIVSWIENLSKEKYEEPYDWKFHSSKYRHNKS 212 Query: 107 RYRLYGELIVHIESLSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLN 166 Y+ Y EL+ + L++ L++ + ER LE +++W+AG+SHDLKTPL+ + GY+ LL + Sbjct: 213 GYKTYQELMQALSELTSTLQRNKAERELLEKTREEWMAGVSHDLKTPLSVIKGYTVLLSS 272 Query: 167 EEYSWNADEQRTFLQEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRL 226 EY W + R F + + ++E+LI D NL+FQ+ + SLP+ L ++ + Sbjct: 273 NEYEWENQQVRDFSLIMEERVEYMEKLIEDFNLTFQLKNE--SLPIHLEEKNVVKVIHDT 330 Query: 227 TADVGNDPRAVSHLLSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRR 286 + P + + +L++ + DE+ L RA++N++ N + H P GT I V + + Sbjct: 331 LEKMKLLPESENKRFALESSHNKILFNMDERYLKRAVENLIANCIKHNPPGTKIKVILYQ 390 Query: 287 E--GDESVNITVSDNGTGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGG 344 + D + I + D+G GMDE+T+ LF +Y+RG S N GTGLGMAI + +I AHGG Sbjct: 391 DVLHDNEIQIIIEDDGIGMDEETVECLFDRYFRGTSATSNNSGTGLGMAIAQQIIKAHGG 450 Query: 345 FLTVESEVSKGTAFHISLP 363 + + S+ GT F I+ P Sbjct: 451 NIDIYSQPGIGTRFKITFP 469 >ref|NP_655026.1| HATPase_c, Histidine kinase-like ATPases [Bacillus anthracis A2012] ref|NP_843604.1| sensor histidine kinase [Bacillus anthracis str. Ames] gb|AAP25090.1| sensor histidine kinase [Bacillus anthracis str. Ames] Length = 580 Score = 203 bits (516), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 103/317 (32%), Positives = 187/317 (58%), Gaps = 6/317 (1%) Query: 50 ILAVFGLNITACSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQGI---FKRNGKLKF 106 IL + + + S+ +G FG PL M W+ +++G +E P + +G F+++GK K+ Sbjct: 264 ILLIVFVYLVILSIWYGNKFGKPLLHAMRWLKNIAGGKYEEPVSKKGKPIRFRKSGKEKW 323 Query: 107 RYRLYGELIVHIESLSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLN 166 +RL+ ++ +E LS LK+ + R+ L+ +++W+ G++HDLKTPL+ + GY+ LL + Sbjct: 324 SFRLFSDVTNSLEHLSITLKKNDAMRQVLQQTREEWITGLTHDLKTPLSSIYGYALLLES 383 Query: 167 EEYSWNADEQRTFLQEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRL 226 ++Y+W + + F + K +++ LI D++L++Q+ + SLP Q +E+ F+Q++ Sbjct: 384 KQYNWTDRDIQQFGSVMKEKSQYMTTLIDDLSLTYQLKNN--SLPAQHVNIEMNQFVQKV 441 Query: 227 TADVGNDPRAVSHLLSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRR 286 N+P + + + ++ +EK R ++N+L+NAV H T + V + + Sbjct: 442 LLQFINNPTLQNQNIEFVPSSNKIQYFIEEKWFQRIIENLLVNAVKHNNETTNVIVKLSQ 501 Query: 287 EGDESVNITVSDNGTGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFL 346 S +++SDNG GMD+ T LF++YYRG N+GTGLG+AI K L+ AH G + Sbjct: 502 NAT-SFTLSISDNGKGMDDKTKELLFERYYRGTNTEESNIGTGLGLAITKQLVHAHNGAI 560 Query: 347 TVESEVSKGTAFHISLP 363 +++SE+ KGT + P Sbjct: 561 SIDSELGKGTTIILVFP 577 >ref|NP_391201.1| similar to two-component sensor histidine kinase [YvrH] [Bacillus subtilis] pir||B70047 two-component sensor histidine kinase homolog yvrG - Bacillus subtilis emb|CAB15311.1| yvrG [Bacillus subtilis subsp. subtilis str. 168] emb|CAA11731.1| putative sensory protein kinase, YvrG [Bacillus subtilis] Length = 573 Score = 199 bits (506), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 105/314 (33%), Positives = 179/314 (57%), Gaps = 6/314 (1%) Query: 50 ILAVFGLNITACSVLFGWYFGSPLRFMMSWIASLSGRNFEPPPALQG--IFK-RNGKLKF 106 ++AV + I +V + + FG P+ + W+ +LS E P +G + K + GK+K Sbjct: 258 VMAVLFMYIIWMTVWYMFRFGLPIFHTIRWLVNLSKGKLEEPRNREGRPVSKNKKGKIKQ 317 Query: 107 RYRLYGELIVHIESLSAGLKQAELERRKLEDNKKDWVAGISHDLKTPLTYVTGYSALLLN 166 YR +GE+ ++ L+ L++ + R K++ +++W+AG+SHDLKTPL+ + GYS +L + Sbjct: 318 PYRFFGEIFESMDQLTETLRRDKRNREKIQATREEWIAGLSHDLKTPLSSIYGYSMMLES 377 Query: 167 EEYSWNADEQRTFLQEIHAKGRHIEELISDINLSFQMNEDHASLPMQLGTVELIGFLQRL 226 ++Y W+ +E Q + K ++ +LI D+NL++++ D +LP++ LI F + + Sbjct: 378 KQYDWSPEEGEEMGQVVREKSEYMSKLIEDLNLTYRLKND--ALPIERKLTSLIPFFKNV 435 Query: 227 TADVGNDPRAVSHLLSLDAETGPLELVADEKLLYRALQNVLMNAVLHTPAGTAIHVTVRR 286 D +P + + +S ++ +E DE R L+N+L NAV H GT I V + + Sbjct: 436 IEDFKKNPFSEGYDISFVSKEEHIEFALDEAWFRRILENLLGNAVKHNGKGTEIQVILEQ 495 Query: 287 EGDESVNITVSDNGTGMDEDTLNNLFQKYYRGAKNGSPNLGTGLGMAIVKSLILAHGGFL 346 + +++ V DNG GMDE+T+ +LF +YYRG GTGLG+AI K L+ H G + Sbjct: 496 TKNH-ISLKVKDNGKGMDEETITHLFNRYYRGTNTKDSTAGTGLGLAIAKELVHLHNGTI 554 Query: 347 TVESEVSKGTAFHI 360 V S + GT I Sbjct: 555 HVNSRTNIGTVITI 568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 558,258,646 Number of extensions: 24022262 Number of successful extensions: 79187 Number of sequences better than 1.0e-05: 4350 Number of HSP's gapped: 74003 Number of HSP's successfully gapped: 4365 Length of query: 368 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 241 Effective length of database: 412,420,005 Effective search space: 99393221205 Effective search space used: 99393221205 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)