BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0010.p (247 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_391202.1| similar to two-component response regulator [Yv... 241 9e-63 ref|NP_830905.1| Two-component response regulator yvrH [Bacillus... 233 2e-60 ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus... 231 1e-59 ref|NP_655027.1| REC, cheY-homologous receiver domain [Bacillus ... 227 2e-58 emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728] 215 8e-55 >ref|NP_391202.1| similar to two-component response regulator [YvrG] [Bacillus subtilis] pir||C70047 two-component response regulator [YvrG] homolog yvrH - Bacillus subtilis emb|CAB15312.1| yvrH [Bacillus subtilis subsp. subtilis str. 168] emb|CAA11730.1| putative DNA binding response regulator, YvrH [Bacillus subtilis] Length = 369 Score = 241 bits (615), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 111/232 (47%), Positives = 159/232 (68%), Gaps = 7/232 (3%) Query: 11 ILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGFE 70 IL+VDDEK I+ +++ L+KE Y NI + E+A+ +K + DLI+LDVM+G +GFE Sbjct: 138 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 197 Query: 71 LCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSLT 130 C IR+++D PIFF+T+ +SD DKL+G +G DDYITKPFNPLE+ ARI+A +R + Sbjct: 198 ACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQS 257 Query: 131 QASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYTT 190 + +SS N+ Y Y F P +A LIV GE+V C+A+ L+LL +FC +PN + + Sbjct: 258 KETSS-------NQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLSK 310 Query: 191 SQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFVP 242 QIYE VWG P YG TV +HI K+R+K + +P PE I+ +RG+GY+F+P Sbjct: 311 DQIYEKVWGYPSYGDNNTVMVHIRKLREKTERDPSNPEYIVTVRGLGYRFIP 362 >ref|NP_830905.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579] gb|AAP08106.1| Two-component response regulator yvrH [Bacillus cereus ATCC 14579] Length = 234 Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 113/232 (48%), Positives = 154/232 (66%), Gaps = 6/232 (2%) Query: 11 ILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGFE 70 ILLVDDE IL LL L+KE + +I++ T+ E AL K + YDLI+LDVML +GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTKQNNYDLIILDVMLPGQSGFD 65 Query: 71 LCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSLT 130 +C IR+ TD PIFF+++ ASD DK++G G DDYITKPFNPLEV+AR+KA RR Sbjct: 66 ICPIIRQQTDCPIFFLSAKASDLDKISGFSYGADDYITKPFNPLEVVARMKAQLRRH--- 122 Query: 131 QASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYTT 190 P + ++GRF + A L V+G VEC+A+ +LL FFC NPN +++ Sbjct: 123 --MKQTVPHEQKSHSISFGRFEIDQHSAELTVDGHIVECSAQLFQLLLFFCENPNYVFSK 180 Query: 191 SQIYELVWGSPGY-GYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFV 241 +IYE VWG+P Y G + TV +HI K+R+K++ +P PE I +RG+GYKFV Sbjct: 181 EEIYEKVWGAPAYNGDDNTVMVHIRKLREKIEHDPSKPEYIKTVRGLGYKFV 232 >ref|NP_977540.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gb|AAS40148.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 234 Score = 231 bits (589), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/235 (48%), Positives = 157/235 (66%), Gaps = 12/235 (5%) Query: 11 ILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGFE 70 ILLVDDE IL LL L+KE + +I++ T+ E AL + + YDLI+LDVML +GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEIALSLTEQNDYDLIILDVMLPGQSGFD 65 Query: 71 LCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRR---Q 127 +C IR+ TD PIFF+T+ ASD DK++G G DDYITKPFNPLEV+AR+KA RR Q Sbjct: 66 ICPIIRQKTDCPIFFLTAKASDLDKISGFAHGADDYITKPFNPLEVVARMKAQLRRHMKQ 125 Query: 128 SLTQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRI 187 +T + + ++GRF + A L VNG VEC+A+ +LL FFC NPN + Sbjct: 126 VMTHEQKAHSS--------SFGRFAIDRDSAELTVNGHVVECSAQLFQLLLFFCENPNYV 177 Query: 188 YTTSQIYELVWGSPGY-GYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFV 241 ++ +IYE VWG+P Y G + TV +HI K+R+K++ +P PE I +RG+GYKF+ Sbjct: 178 FSKEEIYEKVWGAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFI 232 >ref|NP_655027.1| REC, cheY-homologous receiver domain [Bacillus anthracis A2012] ref|NP_843605.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gb|AAP25091.1| DNA-binding response regulator [Bacillus anthracis str. Ames] Length = 234 Score = 227 bits (579), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 112/232 (48%), Positives = 153/232 (65%), Gaps = 6/232 (2%) Query: 11 ILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGFE 70 ILLVDDE IL LL L+KE + +I++ T+ E AL + + YDLI+LDVML +GF+ Sbjct: 6 ILLVDDETAILQLLTTILEKEGFSHITTATSAEMALSLTQQNDYDLIILDVMLPGQSGFD 65 Query: 71 LCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSLT 130 +C IR+ TD PIFF+T+ SD DK++G G DDYITKPFNPLEV+AR+KA RR + Sbjct: 66 ICPIIRQKTDCPIFFLTAKTSDLDKISGFSHGADDYITKPFNPLEVVARMKAQLRRH-MK 124 Query: 131 QASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYTT 190 Q P ++GRF + A L VNG VEC+A+ +LL FFC NPN +++ Sbjct: 125 QVM----PHEQKAHSSSFGRFEIDRYSAELTVNGRVVECSAQLFQLLLFFCENPNYVFSK 180 Query: 191 SQIYELVWGSPGY-GYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKFV 241 +IYE VW +P Y G + TV +HI K+R+K++ +P PE I +RG+GYKF+ Sbjct: 181 EEIYEKVWEAPAYNGDDNTVMVHIRKLREKIEQDPSKPEYIKTVRGLGYKFI 232 >emb|CAB60254.1| MrsR2 protein [Bacillus sp. HIL-Y85/54728] Length = 240 Score = 215 bits (547), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 110/238 (46%), Positives = 154/238 (64%), Gaps = 8/238 (3%) Query: 10 KILLVDDEKGILTLLEITLKKERYHNISSCTTGEQALFFIKNHTYDLILLDVMLGDANGF 69 KIL+VDD++ IL LL +KE + NIS+ TG + L I ++ILLDVML D +GF Sbjct: 7 KILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDGF 66 Query: 70 ELCREIRKHTDTPIFFITSCASDFDKLTGLGIGGDDYITKPFNPLEVIARIKALFRRQSL 129 LC +IR HT+ PI F+T+ +D DKL G GGDDYITKPFNPLE++AR+KA +R Sbjct: 67 TLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVKAQLKRT-- 124 Query: 130 TQASSSGNPEGAGNKEYNYGRFILRPADASLIVNGESVECTAKELELLSFFCRNPNRIYT 189 TQ SSS + Y+Y F + P L+VNG ++C A+E++LL +FC +PN+I + Sbjct: 125 TQLSSS----YPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQILS 180 Query: 190 TSQIYELVWGSPGYGYEKTVTIHISKIRKKLDDNPKAPELIINLRGIGYKF-VPPVKE 246 QIY+ VWG YG + TV +H+ ++R+KL+++P P I +RG GY F P+ E Sbjct: 181 KHQIYKDVWGE-FYGGDSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIFEAEPIDE 237 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 393,074,434 Number of extensions: 16395121 Number of successful extensions: 49357 Number of sequences better than 1.0e-05: 3870 Number of HSP's gapped: 46018 Number of HSP's successfully gapped: 3883 Length of query: 247 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 125 Effective length of database: 425,995,500 Effective search space: 53249437500 Effective search space used: 53249437500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)