BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0009.p (291 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_923382.1| ABC transporter ATP-binding protein [Gloeobacte... 255 8e-67 ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobact... 237 3e-61 ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera... 235 7e-61 gb|EAK23670.1| unknown [environmental sequence] 228 1e-58 ref|NP_736375.1| Unknown [Streptococcus agalactiae NEM316] >gi|2... 227 3e-58 >ref|NP_923382.1| ABC transporter ATP-binding protein [Gloeobacter violaceus] dbj|BAC88377.1| ABC transporter ATP-binding protein [Gloeobacter violaceus PCC 7421] Length = 289 Score = 255 bits (652), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 144/284 (50%), Positives = 193/284 (67%), Gaps = 4/284 (1%) Query: 3 LQIEQVSKSY-GAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 L I ++SK + +SG++L L GV GLLG NGAGK+TLM+MLATI PT G+I + Sbjct: 2 LDIHKLSKVFPSGAVGISGVSLSLDGGVLGLLGANGAGKTTLMQMLATITTPTAGQIRFQ 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 VDI QP LR+ LGYLPQDFGVY NLT EFL Y AA+KG+S+R+ Sbjct: 62 DVDILRQPDYLRRRLGYLPQDFGVYDNLTAFEFLNYFAALKGVSSRARVLEMLELVNLHT 121 Query: 122 XANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSGD 181 A+ R G FSGGM+QR+GIAQ+L+N+P LLIVDEPT GLDP ER+ FRNLL + Sbjct: 122 VAH---RSAGTFSGGMKQRLGIAQALINNPDLLIVDEPTAGLDPEERVRFRNLLGDIGSG 178 Query: 182 RIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQA 241 +++ILSTHIV+DIESIA IA++ KGRL+ A PE L+ + +VW +L +A +++ Sbjct: 179 KLVILSTHIVSDIESIATMIAVIKKGRLLACAPPEALLATTGGRVWEAVLSSAQFDGIRS 238 Query: 242 KYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVS 285 +S+A+++ DGIH RIV+ P NA + A+LEDA+LY ++ Sbjct: 239 SLKLSAAVRKPDGIHARIVAQDCPLQNAVPVEANLEDAFLYLMN 282 >ref|NP_422360.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] pir||D87691 ABC transporter, ATP-binding protein CC3566 [imported] - Caulobacter crescentus gb|AAK25528.1| ABC transporter, ATP-binding protein [Caulobacter crescentus CB15] Length = 294 Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 123/286 (43%), Positives = 174/286 (60%), Gaps = 2/286 (0%) Query: 3 LQIEQVSKSYG-AKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 L IE ++ YG AL ++L + G+ GLLGPNGAGKSTLMR +AT++ PT G I + Sbjct: 2 LIIENLTHVYGNGTRALDEVSLTIPRGMYGLLGPNGAGKSTLMRTIATLQAPTSGHIRFG 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 +D+ P+ LRK LGYLPQDFGVYP ++ + L+++A +KG+S R Sbjct: 62 DIDVLKHPEELRKTLGYLPQDFGVYPRVSAYDMLDHMAVLKGISGGKERKATVEHLLNQV 121 Query: 122 XAND-RKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 D RK+ + GFSGGMRQR GIAQ+L+ DP L+IVDEPT GLDP ER F NLL+ + Sbjct: 122 NLWDVRKKAIAGFSGGMRQRFGIAQALIGDPRLIIVDEPTAGLDPEERNRFLNLLAEIGE 181 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 + ++ILSTHIV D+ + P +A++ G +V+ AP +L+ ++ ++W I+ A L + Sbjct: 182 NVVVILSTHIVEDVSDLCPAMAIICNGAIVREGAPADLVAQLKGRIWKKIIDKAELEAAK 241 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVSS 286 A+Y V S + I S+ P T + LED Y T+SS Sbjct: 242 ARYKVISTRLLAGRTVIHIESETDPGDGFTAVEGGLEDVYFSTLSS 287 >ref|ZP_00175936.1| hypothetical protein Cwat415701 [Crocosphaera watsonii WH 8501] Length = 297 Score = 235 bits (600), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 122/285 (42%), Positives = 172/285 (60%), Gaps = 2/285 (0%) Query: 3 LQIEQVSKSY-GAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 L I++++K+Y AL I+L ++ G+ GLLGPNGAGKSTLMR LAT++ P G + + Sbjct: 2 LNIQELNKTYSNGIKALQNISLTIESGIFGLLGPNGAGKSTLMRTLATLQDPDSGLVTLD 61 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGL-SARSARTRXXXXXXXX 120 G+DI PQ R LGYLPQDFGVYPN++ E L+ +A KG R R Sbjct: 62 GIDIFQDPQKARGWLGYLPQDFGVYPNVSAEELLDLLAVFKGFVKPRQRREMVAHQLQLV 121 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 RK+ +G FSGGMRQR GIAQ+LL +P L+IVDEP GLDP ERI F+NLL+ +S Sbjct: 122 NLYEKRKQKLGTFSGGMRQRFGIAQALLGEPKLVIVDEPMAGLDPSERIRFQNLLAEISE 181 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DR++ILSTHIV D+ S+ P +A++ +G++V P L++ + KVW ++ + Sbjct: 182 DRVLILSTHIVEDVASLCPQMAILNQGKIVTQGCPLQLMEQLHGKVWMKVMSPTEAGTIN 241 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLYTVS 285 ++T+ +A + RI+SD P + L D Y +S Sbjct: 242 EEWTIITARMLQGKRYVRILSDAAPDEGFQGVEPELNDVYFSALS 286 >gb|EAK23670.1| unknown [environmental sequence] Length = 311 Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 130/296 (43%), Positives = 180/296 (60%), Gaps = 17/296 (5%) Query: 3 LQIEQVSKSY-GAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAWN 61 LQI Q++K+Y AL G+ L G+ GLLGPNGAGKS+L+R +AT+++P G+I++N Sbjct: 9 LQIHQLNKTYPDGTAALRGLDLSASCGIFGLLGPNGAGKSSLLRTIATLQQPDSGQISFN 68 Query: 62 GVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXXX 121 GVD+ QPQ LR +LGYLPQ+FGVYP+L+ LE+IA +KGL+ R +R + Sbjct: 69 GVDVLQQPQQLRCQLGYLPQEFGVYPHLSCHALLEHIAVLKGLTDRRSRQQQIELLLAQT 128 Query: 122 XAND-RKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 + + V FSGGMRQR GIAQ+LL DP LLI+DEP+ GLDP ER NLL+ +S Sbjct: 129 NLTEVAHKAVAHFSGGMRQRFGIAQALLGDPKLLILDEPSAGLDPLERQQLHNLLAEISR 188 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 DR+++LS+HIV DIE + +A+M +GR V LI ++ +W L + LP + Sbjct: 189 DRLVLLSSHIVDDIEQLCQQVAIMLQGRFVVQGDTSALITPLQGHIW---LYSGELPLLP 245 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLR------PSANATLLPASLEDAYLYTVSSLGVQ 290 K + +QRS + R V LR P ASL+D Y T++S Q Sbjct: 246 PKVQL---LQRS---YLRGVPQLRLYAAECPGDGFYAATASLQDCYFLTLASFAGQ 295 >ref|NP_736375.1| Unknown [Streptococcus agalactiae NEM316] emb|CAD47601.1| Unknown [Streptococcus agalactiae NEM316] Length = 282 Score = 227 bits (578), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 114/282 (40%), Positives = 176/282 (62%), Gaps = 5/282 (1%) Query: 1 MELQIEQVSKSYGAKHALSGITLKLKPGVTGLLGPNGAGKSTLMRMLATIEKPTQGRIAW 60 M LQ++ ++KSYG K L+ I+ + PG+ GLLG NG GK+TL+ +++ G I W Sbjct: 1 MLLQLDNITKSYGKKIVLNQISYQFTPGLYGLLGANGTGKTTLLNLMSHFTFADSGNIYW 60 Query: 61 NGVDIAGQPQVLRKELGYLPQDFGVYPNLTPLEFLEYIAAMKGLSARSARTRXXXXXXXX 120 NG + Q + + +G+LPQ F Y T + FL YIA +KG+ + A+ Sbjct: 61 NGQE---QSEEFYRHIGFLPQHFRYYDQFTGIAFLNYIATLKGVDKKKAKQEIPRLLELV 117 Query: 121 XXANDRKRLVGGFSGGMRQRVGIAQSLLNDPSLLIVDEPTVGLDPGERIGFRNLLSSLSG 180 + K+ + +SGGM+QR+GIAQ+L+NDP +LI+DEPTVGLDP ER+ FR++LS LS Sbjct: 118 GLGDVGKKKISSYSGGMKQRLGIAQALINDPEILILDEPTVGLDPKERVKFRHILSQLST 177 Query: 181 DRIIILSTHIVTDIESIAPTIALMAKGRLVKYAAPENLIQSVEQKVWNCILPTASLPEMQ 240 ++IIILSTHIV+D+E++A I ++ G+ +++ L++++E KVW I L ++ Sbjct: 178 NKIIILSTHIVSDVEAVAKEIIVLKNGKFIEHGNTAQLLKTIEGKVWE-ITTEPGLSQIP 236 Query: 241 AKYTVSSAIQRSDGIHTRIVSDLRPSANATLLPASLEDAYLY 282 V+ + SD R+VSD+ PS +A L+ +LED Y+Y Sbjct: 237 NIAIVNEKV-FSDSRVFRVVSDICPSDSAQLVVPTLEDFYIY 277 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.134 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 390,774,322 Number of extensions: 14976934 Number of successful extensions: 111529 Number of sequences better than 1.0e-05: 16028 Number of HSP's gapped: 95840 Number of HSP's successfully gapped: 16673 Length of query: 291 Length of database: 757,237,578 Length adjustment: 124 Effective length of query: 167 Effective length of database: 420,565,302 Effective search space: 70234405434 Effective search space used: 70234405434 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)