BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0006.p (379 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAO64357.1| nucleic acid methylase [Acetivibrio cellulolyticus] 431 e-119 ref|NP_655461.1| UPF0020, Putative RNA methylase family UPF0020 ... 409 e-113 ref|NP_978011.1| conserved hypothetical protein [Bacillus cereus... 408 e-112 ref|NP_831341.1| Methyltransferase [Bacillus cereus ATCC 14579] ... 405 e-112 ref|NP_242637.1| BH1771~unknown conserved protein [Bacillus halo... 403 e-111 >gb|AAO64357.1| nucleic acid methylase [Acetivibrio cellulolyticus] Length = 382 Score = 431 bits (1107), Expect = e-119, Method: Compositional matrix adjust. Identities = 209/380 (55%), Positives = 268/380 (70%), Gaps = 1/380 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGY-ETAIENGRVLFSGDYIDICRCNLWLRTSDRVL 59 +GK+ LIAT+ G+EAVV REL +LGY + +ENG+V FSGD IC+ NLWLRT+DRVL Sbjct: 1 MGKIHLIATSAFGIEAVVGRELEKLGYSDQYVENGKVTFSGDESAICKTNLWLRTADRVL 60 Query: 60 VKMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVE 119 +KMG+F A +FDELFE KA+ W+ WIPE+GEFPV+G+S S+L S+ CQ IVKKAIVE Sbjct: 61 LKMGEFKALSFDELFEQTKALPWEQWIPEDGEFPVDGKSVDSKLFSISDCQAIVKKAIVE 120 Query: 120 KLKLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 +LK Y+ EWF E GPRY VEV LL D A +T+DT+G LHKRGYR+ APLKETMA Sbjct: 121 RLKQKYKCEWFKETGPRYRVEVSLLKDMATLTIDTSGSGLHKRGYRKLVGGAPLKETMAC 180 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 ALIQ+SRW R L+DP CGSGT+ IEAAMI +IAPGL R F +E WP IP+ LW +AR Sbjct: 181 ALIQISRWRHDRTLFDPFCGSGTIPIEAAMIGLDIAPGLNREFDAEKWPNIPKALWLDAR 240 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 +EA ++ D L++ GTDI K AG+ I Q + ++ + +YG I Sbjct: 241 KEARGMIKVDRELKIQGTDISEDAISLARYHAKMAGVDKYIHIQRMPMSEISSKNKYGFI 300 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYN 359 I NPPYGER+ KE+EKL ++ G + L TWS + +S + EFE+ +GRKA+K+RKLYN Sbjct: 301 ICNPPYGERLGEIKEIEKLYKEMGTVFGSLDTWSHYILSSHPEFEKLFGRKANKKRKLYN 360 Query: 360 GRIECQYYQYLGPLPPRKPQ 379 GRI C YYQ+ GP PP+ + Sbjct: 361 GRILCNYYQFYGPPPPKNSR 380 >ref|NP_655461.1| UPF0020, Putative RNA methylase family UPF0020 [Bacillus anthracis A2012] ref|NP_844033.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP25519.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 379 Score = 409 bits (1051), Expect = e-113, Method: Compositional matrix adjust. Identities = 198/377 (52%), Positives = 258/377 (68%), Gaps = 1/377 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGYETAIENGRVLFSGDYIDICRCNLWLRTSDRVLV 60 +GK+TLIATA MG+EA+VARE+ +LGYE +EN +V F D ICR NLWLRT+DRV + Sbjct: 1 MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKI 60 Query: 61 KMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEK 120 K+G+F A TFDELFE KA+ W D+IPENGEFPV G+S KS+L SV CQ IVKKA+VEK Sbjct: 61 KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEK 120 Query: 121 LKLSY-RTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 LK +Y RT WF E+GP + +E+ +L D A +T+D +G LHKRGYR EAPLKET+AA Sbjct: 121 LKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETLAA 180 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 +LI+L+ W RP DP CGSGT+ IEAA+I NIAPG R F S+ W + ++ W EAR Sbjct: 181 SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR 240 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 +EA D D PLQ+ G+DID + GL ITF+ + + +YG + Sbjct: 241 QEAEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYV 300 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYN 359 +TNPPYGER+S VE+L ++ G++ L TWS + ++ Y+ FE+ YG+ A K+RKL+N Sbjct: 301 VTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFN 360 Query: 360 GRIECQYYQYLGPLPPR 376 G I YYQY G PPR Sbjct: 361 GFIRTDYYQYFGKRPPR 377 >ref|NP_978011.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS40619.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 381 Score = 408 bits (1048), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/377 (52%), Positives = 257/377 (68%), Gaps = 1/377 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGYETAIENGRVLFSGDYIDICRCNLWLRTSDRVLV 60 +GK+TLIATA MG+EA+VARE+ +LGYE +EN +V F D ICR NLWLRT+DRV + Sbjct: 3 MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWLRTADRVKI 62 Query: 61 KMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEK 120 K+G+F A TFDELFE KA+ W D+IPENGEFPV G+S KS+L SV CQ IVKKA+VEK Sbjct: 63 KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEK 122 Query: 121 LKLSY-RTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 LK +Y RT WF E+GP + +E+ +L D A +T+D +G LHKRGYR EAPLKET+AA Sbjct: 123 LKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRVDQGEAPLKETLAA 182 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 +LI+L+ W RP DP CGSGT+ IEAA+I NIAPG R F S+ W + ++ W EAR Sbjct: 183 SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR 242 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 +E D D PLQ+ G+DID + GL ITF+ + + +YG + Sbjct: 243 QEVEDLANYDQPLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYV 302 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYN 359 +TNPPYGER+S VE+L ++ G++ L TWS + ++ Y+ FE+ YG+ A K+RKL+N Sbjct: 303 VTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSTYVLTSYEAFEKCYGKDASKKRKLFN 362 Query: 360 GRIECQYYQYLGPLPPR 376 G I YYQY G PPR Sbjct: 363 GFIRTDYYQYFGKRPPR 379 >ref|NP_831341.1| Methyltransferase [Bacillus cereus ATCC 14579] gb|AAP08542.1| Methyltransferase [Bacillus cereus ATCC 14579] Length = 381 Score = 405 bits (1041), Expect = e-112, Method: Compositional matrix adjust. Identities = 196/377 (51%), Positives = 257/377 (68%), Gaps = 1/377 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGYETAIENGRVLFSGDYIDICRCNLWLRTSDRVLV 60 +GK+TLIATA MG+EA+VARE+ +LGYE +EN +V F D ICR NLW+RT+DRV + Sbjct: 3 MGKVTLIATAAMGIEALVAREVRDLGYECQVENSKVTFEADEKAICRTNLWVRTADRVKI 62 Query: 61 KMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVEK 120 K+G+F A TFDELFE KA+ W D+IPENGEFPV G+S KS+L SV CQ IVKKA+VEK Sbjct: 63 KVGEFKATTFDELFEKTKALNWGDYIPENGEFPVIGKSLKSELFSVSDCQRIVKKAVVEK 122 Query: 121 LKLSY-RTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 LK +Y RT WF E+GP + +E+ +L D A +T+D +G LHKRGYR EAPLKET+AA Sbjct: 123 LKTTYKRTTWFEEDGPLFRIEIAMLKDIATLTIDASGVGLHKRGYRMDQGEAPLKETLAA 182 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 +LI+L+ W RP DP CGSGT+ IEAA+I NIAPG R F S+ W + ++ W EAR Sbjct: 183 SLIKLTNWKPDRPFVDPFCGSGTIPIEAALIGQNIAPGFNRGFASDEWGWVGKQNWREAR 242 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 +EA D D LQ+ G+DID + GL ITF+ + + +YG + Sbjct: 243 QEAEDLANYDQRLQIIGSDIDHRMIRVAQDNAEEVGLGDLITFKQMQVKDFTTKEDYGYV 302 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMMLYLPTWSFFAISPYKEFEQYYGRKADKRRKLYN 359 +TNPPYGER+S VE+L ++ G++ L TWS + ++ Y+ FE+ YG+ A K+RKL+N Sbjct: 303 VTNPPYGERLSEKALVEQLYKEMGQVFRPLDTWSAYVLTSYEAFEKCYGKDASKKRKLFN 362 Query: 360 GRIECQYYQYLGPLPPR 376 G I YYQY G PPR Sbjct: 363 GFIRTDYYQYFGKRPPR 379 >ref|NP_242637.1| BH1771~unknown conserved protein [Bacillus halodurans] pir||C83871 hypothetical protein BH1771 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05490.1| BH1771~unknown conserved protein [Bacillus halodurans] Length = 385 Score = 403 bits (1035), Expect = e-111, Method: Compositional matrix adjust. Identities = 200/381 (52%), Positives = 254/381 (66%), Gaps = 2/381 (0%) Query: 1 LGKLTLIATAPMGLEAVVARELNELGYE-TAIENGRVLFSGDYIDICRCNLWLRTSDRVL 59 + K+TLIATA MGLEA+VARE+ +LGYE +ENG+V F+ D I R NLWLRT+DRV Sbjct: 1 MEKVTLIATATMGLEALVAREVKDLGYEDVKVENGKVTFTSDVAAIPRANLWLRTADRVK 60 Query: 60 VKMGQFPARTFDELFEGVKAIEWQDWIPENGEFPVEGRSHKSQLTSVPACQGIVKKAIVE 119 +K+G+F A TFDELFE K++ W D IP + EFPV GRS KS+L SV CQ IVKKA+VE Sbjct: 61 LKVGEFKALTFDELFEKTKSLPWADIIPVHAEFPVIGRSVKSKLFSVSDCQAIVKKAVVE 120 Query: 120 KLKLSYRTEWFPENGPRYVVEVILLNDTALITLDTTGPALHKRGYRRQATEAPLKETMAA 179 +K Y+ WF ENGP Y +EV L D A +T+DT+G LHKRGYR ++APLKET+AA Sbjct: 121 SMKKRYKRGWFDENGPLYRIEVALHKDIATLTIDTSGTGLHKRGYRYLHSQAPLKETLAA 180 Query: 180 ALIQLSRWNGHRPLYDPCCGSGTLLIEAAMIAWNIAPGLRRSFPSEHWPEIPQRLWEEAR 239 A+I LS W RP DP CGSGT+ IEAAMI NIAPG R F SE W I W+ AR Sbjct: 181 AIIMLSHWKSDRPFADPFCGSGTIPIEAAMIGQNIAPGFNREFVSEQWHWIGSEHWDRAR 240 Query: 240 EEAFDAVRDDYPLQLTGTDIDPXXXXXXXXXXKSAGLAGEITFQAIAAAKARPQGEYGCI 299 EE D D PL + G+DID AG I+F+ + R + EYG + Sbjct: 241 EEVEDMANYDQPLDILGSDIDHRMVELAQNNAMEAGFGDLISFKQMQVTDFRHKEEYGIL 300 Query: 300 ITNPPYGERISNDKEVEKLTRQFGEMML-YLPTWSFFAISPYKEFEQYYGRKADKRRKLY 358 I NPPYGERI +EVEK+ ++ GE+ +L TWS + ++ ++ FE+ YG++A K+RKLY Sbjct: 301 IGNPPYGERIGEREEVEKMYQKMGEVFREHLETWSIYILTSHEGFEELYGKRATKKRKLY 360 Query: 359 NGRIECQYYQYLGPLPPRKPQ 379 NG I+ YYQ+ GP PPR P+ Sbjct: 361 NGNIKTDYYQFFGPRPPRHPE 381 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.138 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 580,667,281 Number of extensions: 23605940 Number of successful extensions: 48244 Number of sequences better than 1.0e-05: 165 Number of HSP's gapped: 47873 Number of HSP's successfully gapped: 165 Length of query: 379 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 252 Effective length of database: 412,420,005 Effective search space: 103929841260 Effective search space used: 103929841260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)