BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0027.p (177 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CAE11263.1| YngB protein [Bacillus amyloliquefaciens] 163 1e-39 ref|NP_389700.1| similar to UTP-glucose-1-phosphate uridylyltran... 161 5e-39 ref|NP_052790.1| pXO1-94 [Bacillus anthracis] >gi|21392812|ref|N... 149 3e-35 ref|NP_561426.1| UTP-glucose-1-phosphate uridylyltransferase [Cl... 149 3e-35 ref|ZP_00180888.1| hypothetical protein Mther110901 [Moorella th... 147 1e-34 >emb|CAE11263.1| YngB protein [Bacillus amyloliquefaciens] Length = 181 Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 83/153 (54%), Positives = 106/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVS+ PAL Q++ +Y Q VGVQPV A+VSKYGII +G V+ V L+EKP+ Sbjct: 20 MVSDTPALSQLIDVYNQHATETVGVQPVDPADVSKYGIIQTGRQGGHVYQVEDLIEKPAV 79 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRYIL P+IF L + RGAG E QLTDAL EVCR + A +L+G R+D Sbjct: 80 EKAPSHIAVMGRYILTPAIFKTLKTIGRGAGNEIQLTDALREVCRTRSIYARELEGSRFD 139 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDKFG +A E+GL REE+RP+L+ YL +L Sbjct: 140 IGDKFGCFKAGTEIGLLREEMRPKLLAYLEEVL 172 >ref|NP_389700.1| similar to UTP-glucose-1-phosphate uridylyltransferase [Bacillus subtilis] pir||G69892 UTP-glucose-1-phosphate uridylyltransferase homolog yngB [imported] - Bacillus subtilis emb|CAB13701.1| yngB [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 161 bits (408), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/153 (55%), Positives = 107/153 (69%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRGVHVVSGLVEKPSP 60 MVSE PAL Q+M +Y+ +VGVQ V +VSKYGII + G+ V+ V+ LVEKPSP Sbjct: 136 MVSETPALRQLMDVYDVYGTEVVGVQSVLPEDVSKYGIINTSGSQGHVYEVNDLVEKPSP 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS A+MGRY+L SIFSVL + RGAG E QLTDAL EVCR E + A L+G RYD Sbjct: 196 EEAPSEIAVMGRYVLNSSIFSVLKTIGRGAGNEIQLTDALREVCRKEPIHARLLEGNRYD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGLL 153 IGDK G +A+ E+GL R E+R QL+ YL ++ Sbjct: 256 IGDKLGCFKASTEIGLMRPEMRSQLLAYLEDVI 288 >ref|NP_052790.1| pXO1-94 [Bacillus anthracis] ref|NP_652892.1| UTP-glucose-1-phosphate uridylyltransferase, (pXO1-94) [Bacillus anthracis str. A2012] pir||F59102 probable UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) pXO1-94 [similarity] - Bacillus anthracis virulence plasmid pXO1 gb|AAD32398.1| pXO1-94 [Bacillus anthracis] gb|AAM26081.1| UTP-glucose-1-phosphate uridylyltransferase, (pXO1-94) [Bacillus anthracis str. A2012] Length = 295 Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 74/152 (48%), Positives = 103/152 (67%), Gaps = 2/152 (1%) Query: 3 SEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGG--AVRGVHVVSGLVEKPSP 60 S P L Q++ +YE+ ++VGVQ V EVSKYGI+ S + + +S LVEKP Sbjct: 136 STYPCLKQLIDVYEEHHCSVVGVQRVLETEVSKYGIVKSANQNVNQSIIPISMLVEKPPL 195 Query: 61 QAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYD 120 + APS AIMGRYILKP IF VL L G+GGE QLTDA++ + + + +LA + GKRYD Sbjct: 196 ETAPSNLAIMGRYILKPDIFEVLKNLPVGSGGEIQLTDAINVLNKQQKVLAFEFDGKRYD 255 Query: 121 IGDKFGYIQATLEMGLEREELRPQLVPYLRGL 152 +GDKFG+I+AT++ L+RE L+ ++ YLR + Sbjct: 256 VGDKFGFIKATIDFALQRESLKEDVLSYLRNI 287 >ref|NP_561426.1| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens] dbj|BAB80216.1| UTP-glucose-1-phosphate uridylyltransferase [Clostridium perfringens str. 13] Length = 314 Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 76/160 (47%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 4 EPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGIIASGGAVRG-VHVVSGLVEKPSPQA 62 E P L Q++ Y + +++GVQ VP VSKYGI+ +G + G V+ V GLVEKPSP+ Sbjct: 140 EKPCLKQLIDCYNEYRTSVLGVQTVPEENVSKYGIV-NGKHIEGRVYKVKGLVEKPSPEE 198 Query: 63 APSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQGKRYDIG 122 APS AI+GRYI+ P IF +L + G GGE QLTDAL E+ E + A D +G+RYD+G Sbjct: 199 APSNVAILGRYIVTPRIFDILENTKPGKGGEIQLTDALLELMSEEAMYAYDFEGRRYDVG 258 Query: 123 DKFGYIQATLEMGLEREELRPQLVPYLRGLLGSLEDGTES 162 DK G+++AT+E L R +LR + YLR L + TE+ Sbjct: 259 DKLGFLEATVEYALRRPDLRDGFIDYLRELSATENIFTEA 298 >ref|ZP_00180888.1| hypothetical protein Mther110901 [Moorella thermoacetica ATCC 39073] Length = 305 Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/175 (47%), Positives = 109/175 (62%), Gaps = 11/175 (6%) Query: 1 MVSEPPALLQMMKLYEQSEQTIVGVQPVPRAEVSKYGII----ASGGAVRGVHVVSGLVE 56 +V+ P L QM+ +YE+ TIV VQ VPR EV++YG+I G +R V LVE Sbjct: 138 IVNSPSCLEQMLAVYEEVGATIVAVQEVPREEVNRYGVIDPLEVDGSLIR----VRDLVE 193 Query: 57 KPSPQAAPSTNAIMGRYILKPSIFSVLSKLERGAGGEYQLTDALHEVCRNEGLLALDLQG 116 KP P+ APS A++GRYIL P+IF +L K++ GAGGE QLTDAL + R + + A QG Sbjct: 194 KPRPEEAPSNLAVIGRYILVPAIFPLLEKVKPGAGGEIQLTDALRLLARQDRVYAYRFQG 253 Query: 117 KRYDIGDKFGYIQATLEMGLEREELRPQLVPYLRGLLGSLEDGTESLCVPQTQSG 171 KRYDIGDK G++QAT+E L R +L YL G++ S D L V T+ G Sbjct: 254 KRYDIGDKLGFLQATVEFALARPDLAGPFSEYLAGIITSTAD---KLQVAATREG 305 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 258,146,757 Number of extensions: 10496658 Number of successful extensions: 19708 Number of sequences better than 1.0e-05: 479 Number of HSP's gapped: 19438 Number of HSP's successfully gapped: 479 Length of query: 177 Length of database: 757,237,578 Length adjustment: 117 Effective length of query: 60 Effective length of database: 439,570,995 Effective search space: 26374259700 Effective search space used: 26374259700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 122 (51.6 bits)