BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0026.p (134 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389700.1| similar to UTP-glucose-1-phosphate uridylyltran... 177 5e-44 ref|NP_622390.1| UDP-glucose pyrophosphorylase [Thermoanaerobact... 174 6e-43 ref|NP_348951.1| UTP-glucose-1-phosphate uridylyltransferase [Cl... 171 5e-42 ref|NP_052790.1| pXO1-94 [Bacillus anthracis] >gi|21392812|ref|N... 170 1e-41 ref|ZP_00061161.1| COG1210: UDP-glucose pyrophosphorylase [Clost... 169 1e-41 >ref|NP_389700.1| similar to UTP-glucose-1-phosphate uridylyltransferase [Bacillus subtilis] pir||G69892 UTP-glucose-1-phosphate uridylyltransferase homolog yngB [imported] - Bacillus subtilis emb|CAB13701.1| yngB [Bacillus subtilis subsp. subtilis str. 168] Length = 297 Score = 177 bits (450), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 86/120 (71%), Positives = 94/120 (78%) Query: 2 KIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNKK 61 K+RKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEA SGIE I+I+TGRNK+ Sbjct: 4 KVRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAAESGIEDILIITGRNKR 63 Query: 62 SIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFIG 121 SIEDHFD+S +Q I+ LA IHYIRQKEPLGLGHA+ CAE FIG Sbjct: 64 SIEDHFDRSAELEFNLREKGKTETLKEMQQIADLANIHYIRQKEPLGLGHAVLCAEHFIG 123 >ref|NP_622390.1| UDP-glucose pyrophosphorylase [Thermoanaerobacter tengcongensis] gb|AAM23994.1| UDP-glucose pyrophosphorylase [Thermoanaerobacter tengcongensis] Length = 302 Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 83/122 (68%), Positives = 95/122 (77%) Query: 1 VKIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNK 60 +KI+KA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYIVEEAV+SGIE I+I+TGRNK Sbjct: 1 MKIKKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIVEEAVQSGIEDILIITGRNK 60 Query: 61 KSIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFI 120 ++IEDHFDKSV V+ IS + IHYIRQKEP GLGHAI CA+ F+ Sbjct: 61 RAIEDHFDKSVELELELKKKNQESLLSLVEDISNMVNIHYIRQKEPKGLGHAIYCAKSFV 120 Query: 121 GG 122 G Sbjct: 121 GN 122 >ref|NP_348951.1| UTP-glucose-1-phosphate uridylyltransferase [Clostridium acetobutylicum] pir||H97187 UTP-glucose-1-phosphate uridylyltransferase [imported] - Clostridium acetobutylicum gb|AAK80291.1| UTP-glucose-1-phosphate uridylyltransferase [Clostridium acetobutylicum] Length = 303 Score = 171 bits (433), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 79/122 (64%), Positives = 95/122 (77%) Query: 1 VKIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNK 60 ++++KA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYI+EEAV+SGIE I+++TGRNK Sbjct: 1 MRVKKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIIEEAVQSGIEEILVITGRNK 60 Query: 61 KSIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFI 120 ++IEDHFDKS V+ IS LA I+YIRQKEP GLGHAI+CA F+ Sbjct: 61 RAIEDHFDKSFELESELESHNKKELLKVVKDISNLANIYYIRQKEPRGLGHAINCARTFV 120 Query: 121 GG 122 G Sbjct: 121 GN 122 >ref|NP_052790.1| pXO1-94 [Bacillus anthracis] ref|NP_652892.1| UTP-glucose-1-phosphate uridylyltransferase, (pXO1-94) [Bacillus anthracis str. A2012] pir||F59102 probable UTP-glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) pXO1-94 [similarity] - Bacillus anthracis virulence plasmid pXO1 gb|AAD32398.1| pXO1-94 [Bacillus anthracis] gb|AAM26081.1| UTP-glucose-1-phosphate uridylyltransferase, (pXO1-94) [Bacillus anthracis str. A2012] Length = 295 Score = 170 bits (430), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 85/121 (70%), Positives = 91/121 (75%) Query: 1 VKIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNK 60 +KIRKA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYIVEEAV SGIE IIIV+GR K Sbjct: 1 MKIRKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIVEEAVSSGIEDIIIVSGRGK 60 Query: 61 KSIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFI 120 IEDHFDKS ++ IS LA IHYIRQKEP GLGHAI CA +FI Sbjct: 61 HVIEDHFDKSYELEQTLFKKNKIKTLEDIECISNLANIHYIRQKEPKGLGHAIYCARRFI 120 Query: 121 G 121 G Sbjct: 121 G 121 >ref|ZP_00061161.1| COG1210: UDP-glucose pyrophosphorylase [Clostridium thermocellum ATCC 27405] Length = 316 Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 82/122 (67%), Positives = 94/122 (77%) Query: 1 VKIRKAVIPAAGLGTRFLPATKAQPKEMLPIVDKPAIQYIVEEAVRSGIESIIIVTGRNK 60 +++RKA+IPAAGLGTRFLPATKAQPKEMLPIVDKP IQYIVEEA++SGIE III++GR+K Sbjct: 28 LRVRKAIIPAAGLGTRFLPATKAQPKEMLPIVDKPTIQYIVEEAIKSGIEDIIIISGRSK 87 Query: 61 KSIEDHFDKSVXXXXXXXXXXXXXXXXXVQAISGLAGIHYIRQKEPLGLGHAISCAEQFI 120 ++IEDHFDKS VQ IS LA IHYIRQKE GLGHAI CA+ FI Sbjct: 88 RAIEDHFDKSYELEQELEKKGNHDLLKLVQDISNLANIHYIRQKEAKGLGHAIYCAKSFI 147 Query: 121 GG 122 G Sbjct: 148 GN 149 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.320 0.139 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 164,007,283 Number of extensions: 4976411 Number of successful extensions: 14489 Number of sequences better than 1.0e-05: 619 Number of HSP's gapped: 14203 Number of HSP's successfully gapped: 619 Length of query: 134 Length of database: 757,237,578 Length adjustment: 96 Effective length of query: 38 Effective length of database: 496,588,074 Effective search space: 18870346812 Effective search space used: 18870346812 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)