BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0025.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389172.1| similar to dolichol phosphate mannose synthase ... 422 e-117 ref|ZP_00181873.1| hypothetical protein Mther015701 [Moorella th... 388 e-106 ref|ZP_00062208.1| COG0463: Glycosyltransferases involved in cel... 383 e-105 ref|NP_464458.1| similar to sugar transferase [Listeria monocyto... 374 e-102 ref|NP_346836.1| Glycosyltransferase involved in cell wall bioge... 358 1e-97 >ref|NP_389172.1| similar to dolichol phosphate mannose synthase [Bacillus subtilis] sp|O34319|YKCC_BACSU Putative glycosyl transferase ykcC pir||E69855 dolichol phosphate mannose synthase homolog ykcC - Bacillus subtilis emb|CAA05569.1| YkcC [Bacillus subtilis] emb|CAB13146.1| ykcC [Bacillus subtilis subsp. subtilis str. 168] Length = 323 Score = 422 bits (1086), Expect = e-117, Method: Compositional matrix adjust. Identities = 199/323 (61%), Positives = 250/323 (77%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 MS H++YS+++P+YNEE VI ETY+R+K+VM T E YELLFVNDGS D +++ E++ Sbjct: 1 MSRHIQYSIVVPVYNEELVIHETYQRLKEVMDQTKENYELLFVNDGSKDRSIEILREHSL 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D VK+ID SRNFGHQIAITAGMDY+ G+A+V+IDADLQDPPELIL+MI +WK GYEVV Sbjct: 61 IDPRVKIIDFSRNFGHQIAITAGMDYAQGNAIVVIDADLQDPPELILEMIEKWKEGYEVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA R KR GE+ FKK TA++FYR+L TDI IP+DTGDFRL+DRKVC+E+KRL EKN F Sbjct: 121 YAVRTKRKGETFFKKQTAAMFYRLLSGMTDIDIPIDTGDFRLMDRKVCDEMKRLKEKNPF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVG +Q A+EY RDERLAGETKYPLK+M+KLS+DGIT+FS+KP Sbjct: 181 VRGLVSWVGSKQTAVEYVRDERLAGETKYPLKKMLKLSMDGITTFSHKPLKLASYAGILM 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 VLYL LFTD+ + GW+S+I I L F+G VL+ILG++GEY+GRIYDE K R Sbjct: 241 SGTGFLYMFIVLYLKLFTDSTITGWSSLIVIQLLFSGIVLLILGVIGEYIGRIYDEAKDR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRVA 335 PLYIVQ+ Y ++ +Q ++ Sbjct: 301 PLYIVQKSYGIENKRLYRDQHMS 323 >ref|ZP_00181873.1| hypothetical protein Mther015701 [Moorella thermoacetica ATCC 39073] Length = 319 Score = 388 bits (996), Expect = e-106, Method: Compositional matrix adjust. Identities = 185/306 (60%), Positives = 235/306 (76%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 M + VRY++IIP+YNEE VI+ETYRR+ VM + GE YELLFVNDGS D A++IE Sbjct: 1 MKSKVRYTIIIPVYNEEDVIRETYRRLTLVMQSLGEPYELLFVNDGSEDRTAEIIEVLAE 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D+SV+L++ SRNFGHQIAITAGMDY+ GDA+VIIDADLQDPPELI MI +W+ GYEVV Sbjct: 61 TDDSVRLLNFSRNFGHQIAITAGMDYARGDAIVIIDADLQDPPELIPRMIEKWQEGYEVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA+R++R GE+LFKKWTASLFYR LR T++ IP+DTGDFRLIDRKVC+ + + EK+RF Sbjct: 121 YARRVQRKGETLFKKWTASLFYRTLRMMTEVDIPLDTGDFRLIDRKVCDVMHSIREKSRF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 +RGL+SW+GFRQ AIEY R+ER AG+TKYPLK+M++L++DGITSFS+KP Sbjct: 181 IRGLISWIGFRQAAIEYIREERFAGKTKYPLKKMLRLAIDGITSFSHKPLKLATYLGLAL 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 ++ L L +FT + + G + + L NG I+LGILGEY+GRIYDETK R Sbjct: 241 SLPSFAYLVFSLGLKIFTASTISGGRWLFTLLLLLNGVNFILLGILGEYIGRIYDETKDR 300 Query: 313 PLYIVQ 318 PLYI++ Sbjct: 301 PLYILR 306 >ref|ZP_00062208.1| COG0463: Glycosyltransferases involved in cell wall biogenesis [Clostridium thermocellum ATCC 27405] Length = 324 Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust. Identities = 178/307 (57%), Positives = 228/307 (74%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 MS + SV++P+YNEE VI ETY+R+K VM + E YE++FVNDGS D + E Sbjct: 1 MSEKIVCSVVVPLYNEEEVILETYKRLKNVMESLNEPYEIIFVNDGSKDRTGIIANEICN 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D++VKL+D +RNFGHQ AITAGMDYS G+A+V+IDADLQDPPELI MI +W+ GY+VV Sbjct: 61 KDKTVKLVDFARNFGHQTAITAGMDYSEGEAIVVIDADLQDPPELIPKMIEKWREGYDVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 Y KR +R GE+ FKK+TA +FYR LR TD+ IPVDTGDFRLIDRKVCE LK + E+NR+ Sbjct: 121 YGKRKERKGETFFKKFTAKVFYRFLRRMTDVDIPVDTGDFRLIDRKVCEALKLVNERNRY 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 +RG++SW+GF+Q IE+ R++R AGETKYPLK+M+K + D ITSFSYKP Sbjct: 181 IRGIISWLGFKQTGIEFVREKRFAGETKYPLKKMLKFAADAITSFSYKPLKLASYFGMLL 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 + V+++ LFTD +GWAS + I L F+G LIILGI+GEY+GRIYDE KGR Sbjct: 241 SFCSFVYLLVVIWMKLFTDHVQQGWASTVAINLFFHGITLIILGIMGEYIGRIYDEAKGR 300 Query: 313 PLYIVQE 319 PLYIV++ Sbjct: 301 PLYIVKQ 307 >ref|NP_464458.1| similar to sugar transferase [Listeria monocytogenes EGD-e] pir||AE1191 sugar transferase homolog lmo0933 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99011.1| lmo0933 [Listeria monocytogenes] Length = 315 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 176/307 (57%), Positives = 225/307 (73%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 M + YS I+P++NEE V+ +TY+R+ +VM T YE++FVNDGS D M+++ + Sbjct: 1 MEKSIEYSCIVPVFNEEEVLLKTYKRLTEVMQTLDGPYEIIFVNDGSRDLTKSMLQKLSA 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D VK I SRNFGHQIAITAG +Y+ G AV++IDADLQDPPELI++M+ +WK GY+VV Sbjct: 61 EDSCVKAIHFSRNFGHQIAITAGANYAHGKAVIVIDADLQDPPELIIEMVEKWKEGYQVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 YA+R+KR GE+ FKK +ASLFYR+L TDI+IPVDTGDFRL+D +VC EL L EKN F Sbjct: 121 YAQRLKRKGETFFKKQSASLFYRILTKLTDINIPVDTGDFRLMDAQVCRELAGLHEKNPF 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRG VSW+GF+Q A+ YERDER AGETKYPLK+MIKLS+DGITSFSY+P Sbjct: 181 VRGQVSWLGFKQTALHYERDERAAGETKYPLKKMIKLSIDGITSFSYRPLKLASYLGVLT 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 + VL+ FTD + GW S+I + L F G +L ILG++GEY+GRIYDE K R Sbjct: 241 AFIGFIYLIIVLFQRFFTDTTLTGWTSIIILQLVFGGTILFILGLIGEYIGRIYDEVKDR 300 Query: 313 PLYIVQE 319 PLYI++E Sbjct: 301 PLYIIEE 307 >ref|NP_346836.1| Glycosyltransferase involved in cell wall biogenesis [Clostridium acetobutylicum] pir||E96923 glycosyltransferase involved in cell wall biogenesis [imported] - Clostridium acetobutylicum gb|AAK78176.1| Glycosyltransferase involved in cell wall biogenesis [Clostridium acetobutylicum] Length = 326 Score = 358 bits (918), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 168/326 (51%), Positives = 224/326 (68%) Query: 13 MSTHVRYSVIIPMYNEEAVIQETYRRIKKVMGTTGEAYELLFVNDGSTDNCAQMIEEYTY 72 M V YS+++P+YNEE VI E Y R+KK+M + E YE+++VNDGS D+ +E+ Sbjct: 1 MYNTVVYSIVVPLYNEELVIDENYMRLKKIMDSLKENYEIMYVNDGSKDSTMNKVEKICE 60 Query: 73 WDESVKLIDLSRNFGHQIAITAGMDYSLGDAVVIIDADLQDPPELILDMIREWKNGYEVV 132 D+ +KL++ SRNFGHQ AI+AGM+ S GDA+++IDADLQDPPE+I MI +WK+GY+VV Sbjct: 61 KDKRIKLVNFSRNFGHQCAISAGMELSAGDAIIVIDADLQDPPEVIPQMIDKWKDGYDVV 120 Query: 133 YAKRIKRNGESLFKKWTASLFYRVLRYSTDISIPVDTGDFRLIDRKVCEELKRLPEKNRF 192 Y KR+KR GES KK+TA +FYR+LR T+I IPVDTGDFRLIDRKVC+ L LPE+NR+ Sbjct: 121 YGKRLKRKGESFLKKFTAKIFYRLLRSITNIDIPVDTGDFRLIDRKVCDTLSSLPERNRY 180 Query: 193 VRGLVSWVGFRQKAIEYERDERLAGETKYPLKRMIKLSLDGITSFSYKPXXXXXXXXXXX 252 VRGLVSWVGF+Q +E+ R ER AG +KYPLK+M+KL+ DGITSFSYKP Sbjct: 181 VRGLVSWVGFKQTFVEFTRQERFAGASKYPLKKMLKLAFDGITSFSYKPLVASTYLGGLM 240 Query: 253 XXXXXXXXMYVLYLALFTDAAVKGWASMIGITLTFNGFVLIILGILGEYVGRIYDETKGR 312 +YV L++ + ++ I L G + IILGILG+Y+GRI DE+K R Sbjct: 241 FLLGLLAFIYVTAKNLYSHKTILTLGLILAINLCMFGLIFIILGILGQYIGRISDESKAR 300 Query: 313 PLYIVQEFYSGRKQQSAAEQRVAQLN 338 P YI+ + ++ E +LN Sbjct: 301 PNYIIASTINYKENIKEVEPSEVKLN 326 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 473,001,457 Number of extensions: 19374629 Number of successful extensions: 48849 Number of sequences better than 1.0e-05: 673 Number of HSP's gapped: 48830 Number of HSP's successfully gapped: 674 Length of query: 340 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 214 Effective length of database: 415,135,104 Effective search space: 88838912256 Effective search space used: 88838912256 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 126 (53.1 bits)