BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0021.p
         (98 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_388294.1| yczJ [Bacillus subtilis] >gi|7674421|sp|O31484|...   127   9e-29
gb|EAK56657.1| unknown [environmental sequence]                       126   2e-28
ref|NP_295359.1| conserved hypothetical protein [Deinococcus rad...   120   1e-26
ref|ZP_00108628.1| COG2329: Conserved protein involved in polyke...    98   5e-20
ref|NP_948113.1| conserved unknown protein [Rhodopseudomonas pal...    77   9e-14

>ref|NP_388294.1| yczJ [Bacillus subtilis]
 sp|O31484|YCZJ_BACSU Hypothetical protein yczJ
 pir||H69767 hypothetical protein yczJ - Bacillus subtilis
 emb|CAB12220.1| yczJ [Bacillus subtilis subsp. subtilis str. 168]
          Length = 95

 Score =  127 bits (318), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 73/95 (76%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          M+ EAAML I+ GL  +FE +F+ A+ +IS ++GY+ H L  C+E+ HKYLLLV+W  LE
Sbjct: 1  MVREAAMLHIKEGLEQEFEDAFRQAAPIISGMKGYITHSLSKCMEETHKYLLLVEWETLE 60

Query: 61 DHTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRI 95
          DHT GFR SS+YQEWKA+LH +Y+PFP VEHF  +
Sbjct: 61 DHTEGFRGSSEYQEWKALLHRFYTPFPTVEHFQDV 95


>gb|EAK56657.1| unknown [environmental sequence]
          Length = 101

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 56/97 (57%), Positives = 70/97 (72%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          MILE A LQ+ PG  + FE +F  A  +IS++ GY GH+LQ  L D H+YLLLV WR LE
Sbjct: 1  MILEVAPLQVIPGQAAAFELAFSQAQRIISTMPGYGGHQLQRSLADPHRYLLLVNWRRLE 60

Query: 61 DHTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRINL 97
          DHT GFR S QYQ+WKA+LHH+Y PFP VEH+ ++  
Sbjct: 61 DHTQGFRGSPQYQQWKALLHHFYDPFPTVEHYRQVTF 97


>ref|NP_295359.1| conserved hypothetical protein [Deinococcus radiodurans]
 pir||C75371 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1)
 gb|AAF11196.1| conserved hypothetical protein [Deinococcus radiodurans]
          Length = 122

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 73/96 (76%)

Query: 2   ILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLED 61
           +LE AML +RPG T++FE +F  A  LI+SI GY  HELQ CLED HKY+LLV W  LE 
Sbjct: 24  VLEIAMLNVRPGQTAEFEAAFAQAGRLIASIPGYRRHELQRCLEDAHKYVLLVWWDTLEA 83

Query: 62  HTIGFRESSQYQEWKAMLHHYYSPFPVVEHFTRINL 97
           HT+GFR S++Y +W+A+LHH+Y PFPVVEHF  + L
Sbjct: 84  HTVGFRGSAEYGQWRALLHHFYDPFPVVEHFVPVTL 119


>ref|ZP_00108628.1| COG2329: Conserved protein involved in polyketide biosynthesis
          related to monooxygenase [Nostoc punctiforme]
          Length = 74

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/74 (59%), Positives = 55/74 (74%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          MILEA ML ++PGL S FE +FK AS +ISS++GYL HEL  C+E   KYLL V+W  LE
Sbjct: 1  MILEAVMLPVKPGLESDFEAAFKKASKIISSMDGYLSHELHKCIEVQGKYLLFVRWETLE 60

Query: 61 DHTIGFRESSQYQE 74
           HT+GFR S ++QE
Sbjct: 61 SHTVGFRNSPEFQE 74


>ref|NP_948113.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
 emb|CAE28212.1| conserved unknown protein [Rhodopseudomonas palustris CGA009]
          Length = 100

 Score = 77.4 bits (189), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query: 1  MILEAAMLQIRPGLTSQFEQSFKAASVLISSIEGYLGHELQHCLEDDHKYLLLVKWRNLE 60
          MI E A + ++PG  + FE +   A       +G+ G EL   +E   +Y L+VKW+ LE
Sbjct: 1  MITEIAQIDVKPGSEADFEAAVAKAREAFGRSKGFCGFELHKSIEKPQRYRLMVKWQTLE 60

Query: 61 DHTIGFRESSQYQEWKAMLHHYYSPFPVVEH 91
          +HT+ FR S  + EW+ ++  +++  P VEH
Sbjct: 61 NHTVDFRGSENFTEWRGLVGGFFAAPPDVEH 91


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.323    0.136    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 138,402,983
Number of extensions: 4568773
Number of successful extensions: 9675
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 9675
Number of HSP's successfully gapped: 10
Length of query: 98
Length of database: 757,237,578
Length adjustment: 66
Effective length of query: 32
Effective length of database: 578,041,044
Effective search space: 18497313408
Effective search space used: 18497313408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 120 (50.8 bits)