BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0020.p
         (201 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_562451.1| hypothetical protein [Clostridium perfringens] ...   100   2e-20
ref|NP_562524.1| hypothetical protein [Clostridium perfringens] ...    96   3e-19
ref|NP_346673.1| Hypothetical protein [Clostridium acetobutylicu...    96   4e-19

>ref|NP_562451.1| hypothetical protein [Clostridium perfringens]
 dbj|BAB81241.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 208

 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 1   MSSHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQS 60
           + S+WG E+  ++I   SK L ++ PG  Y  +RS LDY+ +LA+E G D+L +EYGYQ 
Sbjct: 6   IKSYWGVELSPRFIDAGSKKLCIILPGIGYCLDRSYLDYSKQLAKEIGYDVLEIEYGYQI 65

Query: 61  ARTELK-RDEIDIIAEECKAAISSL--PEYEQLLFISKSMGAVIAGRVAAELNLSQKT-S 116
            R+E     E  I+  E    I +    EYE++L I KS+G  +   +  +L+   K   
Sbjct: 66  NRSEFNIEKEFSIMVSESLEVIDNAIEKEYEEILIIGKSIGTSVQSFLNKDLSGRFKNIR 125

Query: 117 HLYLTPVADSLPLLR-QSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV- 174
           ++Y++P+  +L     +S   +I G  DP  +  H   +  ++++  + I+ AN+AL++ 
Sbjct: 126 NIYISPINKTLDEFNIESNSLVITGDKDPLLSIAHRVEIEKREDIESFIIEGANHALDIE 185

Query: 175 GSVNESLAVL 184
           G+V  ++  L
Sbjct: 186 GNVMNTVDAL 195


>ref|NP_562524.1| hypothetical protein [Clostridium perfringens]
 dbj|BAB81314.1| hypothetical protein [Clostridium perfringens str. 13]
          Length = 215

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 3   SHWGREVRHKYITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQSAR 62
           S W    R+K I  ES  LA++ PG  Y+ +++LLDY+ +L  ++  D L +EYG+Q +R
Sbjct: 10  SMWKCITRNKLICNESDTLAIILPGLGYTLDKALLDYSKQLILDFKFDCLGIEYGFQVSR 69

Query: 63  TELKR-DEIDI---IAEECKAAISSLP----EYEQLLFISKSMGAVIAGRVAAEL--NLS 112
               R DE DI   + E      S+L     +Y++++ I KS+G V+  R+  E+  N  
Sbjct: 70  EAFNRQDENDIRELLLETLDIIFSALELRRGKYKRIILIGKSLGTVLQSRIDKEIKENYD 129

Query: 113 QKTSHLYLTPVADSLPLLRQSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNAL 172
               ++YLTP+ ++        G II G  D   + ++   +  +  LRV  I+DA ++L
Sbjct: 130 IHIKNIYLTPINETFKENLDKEGLIITGTKDTLISSENLEKIKSE-GLRVLEIEDAGHSL 188

Query: 173 EV-GSVNESLAVLLVIINFYHEFF 195
            + G+V  S+  L +II    ++ 
Sbjct: 189 CIKGNVLSSIKALEIIIENIKDYL 212


>ref|NP_346673.1| Hypothetical protein [Clostridium acetobutylicum]
 pir||B96903 hypothetical protein CAC0026 [imported] - Clostridium
           acetobutylicum
 gb|AAK78013.1| Hypothetical protein [Clostridium acetobutylicum]
          Length = 204

 Score = 95.9 bits (237), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 101/187 (54%), Gaps = 4/187 (2%)

Query: 13  YITQESKALAVVFPGKNYSAERSLLDYAAKLAREYGCDILLLEYGYQSARTELKRDEIDI 72
           Y  + S AL V+FPG NY  E+ LL YA K A +   DIL + Y  + +  ++ +  I+ 
Sbjct: 19  YSYENSSALTVIFPGINYGHEKPLLYYARKAAAQNNIDILCINYKNKISWEDIGKQSIED 78

Query: 73  IAEECKAAISSLPE--YEQLLFISKSMGAVIAGRVAAELNLSQKTSHLYLTPVADSLPLL 130
           +A E K  I ++ E  Y+ + F+ KS+G  IAG  +++LN+      LYLTP+ ++L  +
Sbjct: 79  VAIEIKGIIKNVIEKKYDNIYFLGKSVGTEIAGCTSSKLNIDN-IKFLYLTPIEETLKYI 137

Query: 131 RQSRGSIIYGGSDPTFTEQHAAGLNGQKNLRVYRIDDANNALEV-GSVNESLAVLLVIIN 189
              +  ++ G  D  F  +    +   KN+++   + AN++LE+   +  SL +L  +  
Sbjct: 138 VDRKCIVVSGTKDEFFKSECINKIRENKNVKLMLFEGANHSLEIKDDIIRSLRILDNVAQ 197

Query: 190 FYHEFFR 196
            Y +FF+
Sbjct: 198 LYLDFFK 204


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.134    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 274,627,024
Number of extensions: 10159795
Number of successful extensions: 29097
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 29095
Number of HSP's successfully gapped: 3
Length of query: 201
Length of database: 757,237,578
Length adjustment: 120
Effective length of query: 81
Effective length of database: 431,425,698
Effective search space: 34945481538
Effective search space used: 34945481538
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)