BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0013.p (593 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAN87460.1| sulfate transporter [Heliobacillus mobilis] 573 e-162 ref|NP_470237.1| similar to transport proteins [Listeria innocua... 553 e-156 ref|NP_464423.1| similar to transport proteins [Listeria monocyt... 545 e-153 ref|NP_391346.1| similar to transporter [Bacillus subtilis] >gi|... 540 e-152 ref|NP_661609.1| sulfate transporter family protein [Chlorobium ... 370 e-101 >gb|AAN87460.1| sulfate transporter [Heliobacillus mobilis] Length = 595 Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust. Identities = 288/573 (50%), Positives = 380/573 (66%), Gaps = 6/573 (1%) Query: 11 NIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGSKFQIGG 70 + LRKDL++GI VG++AIPL +AFAIASG PE GIYT ++AG LI++FGGS QIGG Sbjct: 15 RMEKLRKDLVAGITVGMVAIPLALAFAIASGATPEQGIYTAVIAGXLIAIFGGSHVQIGG 74 Query: 71 PTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIGFTAGIA 130 PTGAF+P+LF+I M YGY+NLL+AGM+A IKFIPRPVT+GFTAGIA Sbjct: 75 PTGAFVPLLFSIMMTYGYDNLLIAGMLAGLFLIFMGLTGMGALIKFIPRPVTVGFTAGIA 134 Query: 131 VIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVLGIRFAP 190 VIIF GQ+ FLGL+ + +H+ F+DN+ E+ H+ T+ SI A++CL L+ + P Sbjct: 135 VIIFFGQVDTFLGLQGVVKHKDFIDNVIELSKHVDTVQWSSITVALVCLVCLLFSHKLVP 194 Query: 191 KVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLLLRPAFV 250 VPG LVG++ +TI A + F G V TIGS +G + LPSFH+P +T ++I+ ++ PA Sbjct: 195 AVPGPLVGIVVSTIFAHVVFGGNVETIGSKFGQLSGGLPSFHWPSVTLDQIQNMVGPALT 254 Query: 251 IAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAIARTATN 310 IA LG+IESLLS VVADGM+G R SNRELIGQG+AN+ PLFGGIPATGAIARTATN Sbjct: 255 IAALGSIESLLSCVVADGMTGKR--HDSNRELIGQGIANMVTPLFGGIPATGAIARTATN 312 Query: 311 IKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEFLHLLKL 370 I+SG A+P++ ++H + VFL++L+FAP+ + +PL +M+PILM VAWNMS+RKEF+HLL+ Sbjct: 313 IRSGGATPVAALVHSLTVFLLILVFAPFVAQVPLVSMSPILMRVAWNMSDRKEFVHLLRT 372 Query: 371 KTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPSSVKVEAH 430 D D M E + KVLP+ K+ Sbjct: 373 TRSDMAVLIVTFALTVIFDLTIAVGIGMIIAAALFINGMSESLAIRKVLPEGPDEKLAPE 432 Query: 431 MVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPFIDTTGEAN 490 VT HDCPQI IY ++G LFFGAA FE T+ + K KV++LRMG VP +D TGE Sbjct: 433 AVTPIHDCPQIAIYTIDGALFFGAAAIFEKTLTESIQSKPKVLILRMGHVPMMDATGEMV 492 Query: 491 LAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAINDALKAINHS 550 L +V ++ GGR++ISGI QP ELL+K+GLY+ IG F++ TG AI AL I+ Sbjct: 493 LEDIVHNFRKRGGRILISGIMPQPEELLRKSGLYESIGEEHFFKRTGAAITSALNHIDRH 552 Query: 551 KCLGCRHAAFRECTAFSGLDEASGRSTFKGRVP 583 +C+GC H AF EC+ S + G KG +P Sbjct: 553 RCVGCPHNAFYECSQLSRV----GSIHIKGSIP 581 >ref|NP_470237.1| similar to transport proteins [Listeria innocua] pir||AH1544 transport protein homolog lin0896 [imported] - Listeria innocua (strain Clip11262) emb|CAC96128.1| lin0896 [Listeria innocua] Length = 544 Score = 553 bits (1426), Expect = e-156, Method: Compositional matrix adjust. Identities = 286/542 (52%), Positives = 372/542 (68%), Gaps = 10/542 (1%) Query: 8 KGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGSKFQ 67 KGY A RKDL++GIIVG+IA+PLGM+FAIASGVKPEYGIY++ VAGI++S+FGGS+FQ Sbjct: 10 KGYTWARFRKDLLAGIIVGIIALPLGMSFAIASGVKPEYGIYSSFVAGIIVSIFGGSRFQ 69 Query: 68 IGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIGFTA 127 I GPTGAFIP+L I + YGY++LL+AGMMA IKFIPRPVTIGFTA Sbjct: 70 IAGPTGAFIPVLLGIVLTYGYQDLLVAGMMAGVLLCLMGIFKLGTLIKFIPRPVTIGFTA 129 Query: 128 GIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVLGIR 187 GIAV IF GQ+ NFLGL M++HESF+ NMKEI LHL + N YS+L + IC+ VL + + Sbjct: 130 GIAVTIFMGQVGNFLGLTGMEKHESFIANMKEIWLHLDSWNFYSVLISCICMFVLFVFPK 189 Query: 188 FAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLLLRP 247 P++P L+GL+ T IA LFF + TIGSAYG+IP+T P F FP +T+ + L+ P Sbjct: 190 ILPRIPAPLIGLVITTGIAMLFFKDALPTIGSAYGEIPSTFPPFQFPDMTFANMSKLIGP 249 Query: 248 AFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAIART 307 AFVIAMLG IESLLSAVVADGM+ ++ SNRELIGQG+ANI P+FGGIPATGAIART Sbjct: 250 AFVIAMLGGIESLLSAVVADGMTNTK--HNSNRELIGQGIANIVTPMFGGIPATGAIART 307 Query: 308 ATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEFLHL 367 ATNI +GA S +SGVIHG+ V L LL+ AP A +IP+AAMAPILM+VAWNMSERK F H+ Sbjct: 308 ATNINNGATSRVSGVIHGIFVLLTLLVLAPVAINIPIAAMAPILMLVAWNMSERKTFQHI 367 Query: 368 LKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPSSVKV 427 +KLK+GD+ A K+MG + ++ +P ++ Sbjct: 368 IKLKSGDTLVLVITFLLTVFASLTVAVEVGLLLAVVLFAKQMGSSMQIEEI--EPEGAEI 425 Query: 428 EAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPFIDTTG 487 H+ HD +I I+ + GPLFFGAA F+ + A K + ++LRMGKVP ID T Sbjct: 426 APHL----HD--KISIFTIRGPLFFGAAQIFQQNIIKAIHVKPEFLILRMGKVPIIDATA 479 Query: 488 EANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAINDALKAI 547 E + KE + GG+++I+G+ + E L+ +GLYD+IG F+ HT +A++ A A+ Sbjct: 480 EGYFHQIEKEFSKQGGQILITGLTDKAKESLKGSGLYDRIGEEHFFLHTEDAVHYAENAL 539 Query: 548 NH 549 + Sbjct: 540 SE 541 >ref|NP_464423.1| similar to transport proteins [Listeria monocytogenes EGD-e] pir||AI1186 transport proteins homolog lmo0897 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98975.1| lmo0897 [Listeria monocytogenes] Length = 541 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 289/541 (53%), Positives = 370/541 (68%), Gaps = 10/541 (1%) Query: 8 KGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGSKFQ 67 KGY A RKDL++GIIVG+IA+PL M+FAIASGV PEYGIY++ VAGI++S+FGGSKFQ Sbjct: 10 KGYTWARFRKDLLAGIIVGIIALPLAMSFAIASGVSPEYGIYSSFVAGIIVSIFGGSKFQ 69 Query: 68 IGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIGFTA 127 I GPTGAFIP+L I + YGY++LL+AGMMA IKFIPRPVTIGFTA Sbjct: 70 IAGPTGAFIPVLLGIVLTYGYQDLLVAGMMAGVLLCLMGIFKIGTLIKFIPRPVTIGFTA 129 Query: 128 GIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVLGIR 187 GIAV IF GQ+ NFLGL M++HESFV NMKEI LHL + N YS+L + IC+ VL + + Sbjct: 130 GIAVTIFMGQVGNFLGLTGMEKHESFVANMKEIWLHLDSWNFYSVLISCICMLVLFIFPK 189 Query: 188 FAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLLLRP 247 P++P L+GL+ T IA LFF + TIGSAYG+IP+T P F FP +T+ + L+ P Sbjct: 190 ILPRIPAPLIGLVVTTAIAMLFFPDALPTIGSAYGNIPSTFPPFEFPDMTFANMSKLIGP 249 Query: 248 AFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAIART 307 AFVIAMLG IESLLSAVVADGM+ ++ SNRELIGQG+ANI P+FGGIPATGAIART Sbjct: 250 AFVIAMLGGIESLLSAVVADGMTNTK--HNSNRELIGQGIANIVTPMFGGIPATGAIART 307 Query: 308 ATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEFLHL 367 ATNI +GA S +SGVIHGV V L LL+ AP A +IP+AAMAPILM+VAWNMSERK F H+ Sbjct: 308 ATNINNGATSRVSGVIHGVFVLLTLLVLAPVAVNIPIAAMAPILMLVAWNMSERKTFQHI 367 Query: 368 LKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPSSVKV 427 +KLK+GD+ A K+MG + ++ +P ++ Sbjct: 368 IKLKSGDTLVLVITFLLTVFASLTVAVEVGLLLAVVLFAKQMGSSMQIEEI--EPEGAEI 425 Query: 428 EAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPFIDTTG 487 H+ H+ +I I+ + GPLFFGAA F+ + A K K ++LRMGKVP ID T Sbjct: 426 APHL----HE--KISIFTIRGPLFFGAAQIFQQNIIKAIHVKPKYLILRMGKVPIIDATA 479 Query: 488 EANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAINDALKAI 547 E + KE + GG+++I+G+ + E L+ +GLYD+IG F+ HT +AI+ A A+ Sbjct: 480 EGYFHQIEKEFSKQGGQILITGLTDKAKESLKGSGLYDRIGEEHFFSHTEDAIHYAENAL 539 Query: 548 N 548 N Sbjct: 540 N 540 >ref|NP_391346.1| similar to transporter [Bacillus subtilis] pir||B70033 transporter homolog yvdB - Bacillus subtilis emb|CAB08068.1| hypothetical protein [Bacillus subtilis] emb|CAB15471.1| yvdB [Bacillus subtilis subsp. subtilis str. 168] Length = 530 Score = 540 bits (1391), Expect = e-152, Method: Compositional matrix adjust. Identities = 287/534 (53%), Positives = 373/534 (69%), Gaps = 11/534 (2%) Query: 5 GRFKGYNIASLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGS 64 GRFKGYN+ +KDLI+GI+VGV+AIPLGMAFAIASGV+PEYG+YT ++AGI ISLFGGS Sbjct: 5 GRFKGYNLQKFQKDLIAGIVVGVVAIPLGMAFAIASGVEPEYGLYTVVIAGICISLFGGS 64 Query: 65 KFQIGGPTGAFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIG 124 K+QIGGPTGAF+PILF I M+YG ENLL+AG MA +KF+P+PV +G Sbjct: 65 KYQIGGPTGAFVPILFGIIMQYGLENLLIAGFMAGVMLVLFGLFKLGKIMKFVPKPVIVG 124 Query: 125 FTAGIAVIIFTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVL 184 FTAGIAV+IFT QIANFLGL+++++HE+F NM EI L T N+Y+ILTAVI L +L++ Sbjct: 125 FTAGIAVLIFTEQIANFLGLRNVEKHENFHHNMFEIVQQLGTFNVYAILTAVIGLVILLV 184 Query: 185 GIRFAPKVPGALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLL 244 + PKVPGAL+ LL +T++A +FF ++ TIGS YG+IP LP F FP +T +++ +L Sbjct: 185 SAKVMPKVPGALLALLISTVVAVVFFPDRMATIGSTYGEIPRHLPEFQFPELTLDKMVML 244 Query: 245 LRPAFVIAMLGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAI 304 A VIA+LG +ES+LSA+VAD M GS+ SN+EL+GQG+AN+AAPLFGGIPATGAI Sbjct: 245 FPAALVIALLGGLESILSAMVADNMKGSK--HDSNKELVGQGIANMAAPLFGGIPATGAI 302 Query: 305 ARTATNIKSGAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEF 364 ARTATNIK+GA SP+SGV+HGVVV L+LL+FAPYAS +PLA+MAPILMVVAWNMSERKE Sbjct: 303 ARTATNIKNGAVSPVSGVVHGVVVLLVLLVFAPYASHVPLASMAPILMVVAWNMSERKEV 362 Query: 365 LHLLKLKTGDSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRMGEVHLVSKVLPDPSS 424 ++L+LK DS D +RM E + Sbjct: 363 ANMLRLKNADSFILAATFALTVLFDLIIGVATGLLLAFVFFIRRMSEATRIH-------- 414 Query: 425 VKVEAHMVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPFID 484 E H V + P + +Y +EGPLFFG+ E+++ K K ++L M KV ++D Sbjct: 415 -NQETHPVLAKREDPSVSMYAIEGPLFFGSIDSLESSLLEHVQKKPKTLILLMNKVHYMD 473 Query: 485 TTGEANLAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGE 538 T+ EA L ++ ++ G+LMI G+QSQP ELL KTGL+ KIG F++H E Sbjct: 474 TSAEAVLGNIMNRIKRHNGKLMIVGLQSQPKELLHKTGLFHKIGKQHFFDHHDE 527 >ref|NP_661609.1| sulfate transporter family protein [Chlorobium tepidum TLS] gb|AAM71951.1| sulfate transporter family protein [Chlorobium tepidum TLS] Length = 618 Score = 370 bits (949), Expect = e-101, Method: Compositional matrix adjust. Identities = 213/533 (39%), Positives = 310/533 (58%), Gaps = 8/533 (1%) Query: 14 SLRKDLISGIIVGVIAIPLGMAFAIASGVKPEYGIYTTIVAGILISLFGGSKFQIGGPTG 73 L +D++SGI+VG++A+PLG+AFAIASGV PE G+ + ++ G LIS GGS+ QIGGPTG Sbjct: 55 QLGRDIVSGILVGIVALPLGIAFAIASGVSPEKGLISAVIGGFLISFLGGSRVQIGGPTG 114 Query: 74 AFIPILFAIAMEYGYENLLLAGMMAXXXXXXXXXXXXXXXIKFIPRPVTIGFTAGIAVII 133 AFI IL+ I +YG L++A +MA IKFIP PV +GFT+GIA+II Sbjct: 115 AFIVILYGIVQQYGLNGLMIATIMAGVILIIMGLSHLGSLIKFIPYPVVVGFTSGIAIII 174 Query: 134 FTGQIANFLGLKDMKRHESFVDNMKEIGLHLSTINLYSILTAVICLAVLVLGIRFAPKVP 193 F+ ++ +FLGL F+D L T + +IL + L ++V + + K+P Sbjct: 175 FSSEVKDFLGLHMASVPADFIDKWAAYFKALPTASPETILVGAVALLIIVFWPKVSRKIP 234 Query: 194 GALVGLLCATIIAALFFSGKVTTIGSAYGDIPNTLPSFHFPVITWERIKLLLRPAFVIAM 253 G L+ L+ T+ A +V TI + +GDI ++P+ FP + I+ L+ PA IA+ Sbjct: 235 GPLIALIVTTV-AVHMLHLQVDTIETRFGDISASIPAPSFPSLDMATIRHLIMPATTIAL 293 Query: 254 LGAIESLLSAVVADGMSGSRXXXXSNRELIGQGVANIAAPLFGGIPATGAIARTATNIKS 313 LGAIE+LLSAVVADGM G+R SN EL+ QGVANI +PLFGGIP TGAIARTATNIK+ Sbjct: 294 LGAIEALLSAVVADGMIGARHK--SNMELVAQGVANIVSPLFGGIPVTGAIARTATNIKN 351 Query: 314 GAASPLSGVIHGVVVFLILLLFAPYASSIPLAAMAPILMVVAWNMSERKEFLHLLKLKTG 373 G +P++G++H + + I+L+F +A IP+ +A IL+VVAWNMSE F LLK Sbjct: 352 GGRTPIAGIVHAITLLGIMLVFGSWAKLIPMPTLAAILIVVAWNMSEHHVFRQLLKSPKS 411 Query: 374 DSXXXXXXXXXXXXADXXXXXXXXXXXXXXXXXKRM---GEVHLVSKVLPDPSSVKVEAH 430 D D KRM V +++ L D + + + Sbjct: 412 DVAVLLTTFGLTVIFDLTIAIEVGMLLSVILFMKRMASLANVGVITGELKDEED-EADPN 470 Query: 431 MVTDSHDCPQIGIYNVEGPLFFGAAYRFENTMPGAGPDKQKVILLRMGKVPFIDTTGEAN 490 + + + ++ + GPLFFGAA +F++ M + +LRM KV ID TG Sbjct: 471 AIVNRSIPEGVDVFEISGPLFFGAASKFKDAM-HVVEKAPSIRILRMRKVMSIDATGLNM 529 Query: 491 LAGLVKELQEDGGRLMISGIQSQPLELLQKTGLYDKIGATQFYEHTGEAINDA 543 L L + ++ G L++SG+ +QPL +Q+ GL D+IG + + +A++ A Sbjct: 530 LKELFNDCRKSGTTLILSGVHTQPLFAMQQYGLADEIGEENIFGNIDDALDRA 582 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.324 0.141 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 788,033,548 Number of extensions: 31452213 Number of successful extensions: 82186 Number of sequences better than 1.0e-05: 615 Number of HSP's gapped: 81000 Number of HSP's successfully gapped: 638 Length of query: 593 Length of database: 757,237,578 Length adjustment: 131 Effective length of query: 462 Effective length of database: 401,559,609 Effective search space: 185520539358 Effective search space used: 185520539358 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)