BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0236.0009.p
         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_658073.1| aminotran_1_2, Aminotransferase class I and II ...   117   6e-26
ref|NP_389241.1| similar to aspartate aminotransferase [Bacillus...   117   1e-25
ref|NP_691341.1| transaminase [Oceanobacillus iheyensis HTE831] ...   115   3e-25
ref|NP_833753.1| Aspartate aminotransferase [Bacillus cereus ATC...   115   4e-25
ref|NP_980396.1| aminotransferase, classes I and II [Bacillus ce...   113   1e-24

>ref|NP_658073.1| aminotran_1_2, Aminotransferase class I and II [Bacillus anthracis
           A2012]
 ref|NP_846489.1| aminotransferase, classes I and II [Bacillus anthracis str. Ames]
 gb|AAP27975.1| aminotransferase, classes I and II [Bacillus anthracis str. Ames]
          Length = 392

 Score =  117 bits (294), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/77 (66%), Positives = 62/77 (80%)

Query: 4   LGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGLVSD 63
           +GW V+ P GSFFAWLPVPEGYTS+ F+D+LL++AHV VAPG+GFGE+GEGYVR GL+  
Sbjct: 314 IGWNVDIPTGSFFAWLPVPEGYTSEQFSDILLEKAHVAVAPGVGFGEHGEGYVRVGLLHT 373

Query: 64  EARLAEAVKRIAGLKLF 80
           E RL EA+ RI  L  F
Sbjct: 374 EDRLREAINRIDKLNFF 390


>ref|NP_389241.1| similar to aspartate aminotransferase [Bacillus subtilis]
 sp|O31665|MTNE_BACSU Transaminase mtnE
 pir||F69863 probable transaminase (EC 2.6.1.-) ykrV [similarity] - Bacillus
           subtilis
 emb|CAB13231.1| ykrV [Bacillus subtilis subsp. subtilis str. 168]
          Length = 398

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query: 1   LRELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGL 60
            RE+GW V AP GSFFAWLPVPEGYTS+ F+DLLL++A+V VA G GFGEYGEGYVR GL
Sbjct: 310 CREIGWDVTAPAGSFFAWLPVPEGYTSEQFSDLLLEKANVAVAAGNGFGEYGEGYVRVGL 369

Query: 61  VSDEARLAEAVKRIAGLKLFA 81
           ++ E RL EA  RI  L LF 
Sbjct: 370 LTSEERLKEAAYRIGKLNLFT 390


>ref|NP_691341.1| transaminase [Oceanobacillus iheyensis HTE831]
 dbj|BAC12376.1| transaminase [Oceanobacillus iheyensis HTE831]
          Length = 387

 Score =  115 bits (289), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/79 (63%), Positives = 62/79 (78%)

Query: 2   RELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGLV 61
           + +GW + AP GSFFAWLPVP G+TS++FAD LL+E  V VA G GFG +GEGY+R GL+
Sbjct: 309 KRIGWDINAPQGSFFAWLPVPNGFTSETFADYLLNEVDVAVAAGNGFGTFGEGYIRVGLL 368

Query: 62  SDEARLAEAVKRIAGLKLF 80
            DE R+ EA+KRI GLKLF
Sbjct: 369 VDEQRIVEAIKRIEGLKLF 387


>ref|NP_833753.1| Aspartate aminotransferase [Bacillus cereus ATCC 14579]
 gb|AAP10954.1| Aspartate aminotransferase [Bacillus cereus ATCC 14579]
          Length = 392

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 62/80 (77%)

Query: 1   LRELGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGL 60
              +GW V+ P GSFFAWLPVP+GYTS+ F+D+LL++AHV VAPG+GFGE+GEGYVR GL
Sbjct: 311 CHSIGWNVDIPTGSFFAWLPVPKGYTSEQFSDILLEKAHVAVAPGVGFGEHGEGYVRVGL 370

Query: 61  VSDEARLAEAVKRIAGLKLF 80
           +  E RL EA+ RI  L  F
Sbjct: 371 LHTEDRLREAINRIDKLNFF 390


>ref|NP_980396.1| aminotransferase, classes I and II [Bacillus cereus ATCC 10987]
 gb|AAS43004.1| aminotransferase, classes I and II [Bacillus cereus ATCC 10987]
          Length = 392

 Score =  113 bits (283), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 49/77 (63%), Positives = 61/77 (79%)

Query: 4   LGWKVEAPGGSFFAWLPVPEGYTSQSFADLLLDEAHVVVAPGIGFGEYGEGYVRAGLVSD 63
           +GW V  P GSFFAWLPVP+GYTS+ F+++LL++AHV VAPG+GFGE+GEGYVR GL+  
Sbjct: 314 IGWNVNIPTGSFFAWLPVPKGYTSEQFSNILLEKAHVAVAPGVGFGEHGEGYVRVGLLHT 373

Query: 64  EARLAEAVKRIAGLKLF 80
           E RL EA+ RI  L  F
Sbjct: 374 EDRLREAIHRIDKLNFF 390


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 136,622,257
Number of extensions: 5086438
Number of successful extensions: 12477
Number of sequences better than 1.0e-05: 238
Number of HSP's gapped: 12533
Number of HSP's successfully gapped: 238
Length of query: 84
Length of database: 757,237,578
Length adjustment: 53
Effective length of query: 31
Effective length of database: 613,337,331
Effective search space: 19013457261
Effective search space used: 19013457261
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)