BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0236.0006.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_832770.1| NAD(P)H nitroreductase [Bacillus cereus ATCC 14... 342 3e-93 ref|NP_979378.1| nitroreductase family protein [Bacillus cereus ... 341 6e-93 ref|NP_388447.1| similar to NADH dehydrogenase [Bacillus subtili... 338 7e-92 ref|NP_656909.1| Nitroreductase, Nitroreductase family [Bacillus... 288 6e-77 ref|NP_463636.1| similar to NADH oxidase [Listeria monocytogenes... 266 2e-70 >ref|NP_832770.1| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579] gb|AAP09971.1| NAD(P)H nitroreductase [Bacillus cereus ATCC 14579] Length = 212 Score = 342 bits (878), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 160/210 (76%), Positives = 184/210 (87%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYDPSVKISK EMTEILTEATLAPSSVNMQPWRF+VIES E Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDPSVKISKEEMTEILTEATLAPSSVNMQPWRFVVIESDE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 KA LAPLAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERGLMPAEVKE Q+ L Sbjct: 63 AKATLAPLAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGLMPAEVKEDQMKKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKE Y Sbjct: 123 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKESY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLPI+ +A+WK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPIEKVAEWK 212 >ref|NP_979378.1| nitroreductase family protein [Bacillus cereus ATCC 10987] gb|AAS41986.1| nitroreductase family protein [Bacillus cereus ATCC 10987] Length = 212 Score = 341 bits (875), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 159/210 (75%), Positives = 183/210 (87%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYD SVKISK EMTEILTEATLAPSSVNMQPWRFLVIES E Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDSSVKISKEEMTEILTEATLAPSSVNMQPWRFLVIESDE 62 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 KA LAPLAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERG MPAEVKE Q+ L Sbjct: 63 AKATLAPLAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGFMPAEVKEDQMKKL 122 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKERY Sbjct: 123 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKERY 182 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLISIGKAA++GY SVRLP++ +A+WK Sbjct: 183 VPVMLISIGKAADSGYQSVRLPVEKVAEWK 212 >ref|NP_388447.1| similar to NADH dehydrogenase [Bacillus subtilis] sp|P96707|YDGI_BACSU Putative NAD(P)H nitroreductase ydgI pir||C69783 NADH dehydrogenase homolog ydgI - Bacillus subtilis dbj|BAA19399.1| SIMILAR TO NITROREDUCTASE. [Bacillus subtilis] emb|CAB12385.1| ydgI [Bacillus subtilis subsp. subtilis str. 168] Length = 209 Score = 338 bits (866), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 160/207 (77%), Positives = 176/207 (85%) Query: 5 QTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAEGKA 64 +TNDF I+ GRRSIR YDP+VKISK EMTEIL EAT APSSVN QPWRFLVI+S EGK Sbjct: 3 KTNDFMEIMKGRRSIRNYDPAVKISKEEMTEILEEATTAPSSVNAQPWRFLVIDSPEGKE 62 Query: 65 KLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAALGAH 124 KLAPLA FNQ QV TS+AVIAVF DMNN DY EEIY AVE G MP EVK+RQ+AAL AH Sbjct: 63 KLAPLASFNQTQVTTSSAVIAVFADMNNADYLEEIYSKAVELGYMPQEVKDRQIAALTAH 122 Query: 125 FANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERYIPV 184 F LPA VNRETI+IDGGL SMQLML ARAHGYDTNPIGG++K+ IAE FG+DKERY+PV Sbjct: 123 FEKLPAQVNRETILIDGGLVSMQLMLTARAHGYDTNPIGGYDKENIAETFGLDKERYVPV 182 Query: 185 MLISIGKAAEAGYASVRLPIDTIAQWK 211 ML+SIGKAA+ GYAS RLPIDTIA+WK Sbjct: 183 MLLSIGKAADEGYASYRLPIDTIAEWK 209 >ref|NP_656909.1| Nitroreductase, Nitroreductase family [Bacillus anthracis A2012] ref|NP_845371.1| nitroreductase family protein [Bacillus anthracis str. Ames] gb|AAP26857.1| nitroreductase family protein [Bacillus anthracis str. Ames] Length = 188 Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 139/210 (66%), Positives = 163/210 (77%), Gaps = 24/210 (11%) Query: 2 NTTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAE 61 N+ +TNDF I+TGRRSIRKYDPSVKISK EMTEILTEATLAP Sbjct: 3 NSVKTNDFNEILTGRRSIRKYDPSVKISKEEMTEILTEATLAP----------------- 45 Query: 62 GKAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAAL 121 LAKFNQ QVETS+A+IA+F D+NNFD AEEIYGTAVERG MPAEVKE Q+ L Sbjct: 46 -------LAKFNQSQVETSSAMIALFGDLNNFDNAEEIYGTAVERGFMPAEVKEDQMKKL 98 Query: 122 GAHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERY 181 A+F+ + V ++T++IDGGL +MQ MLAARAHGYDT PIGGFEKDQIAE FG+DKERY Sbjct: 99 SAYFSMVTPEVMKDTVLIDGGLVAMQFMLAARAHGYDTCPIGGFEKDQIAEAFGLDKERY 158 Query: 182 IPVMLISIGKAAEAGYASVRLPIDTIAQWK 211 +PVMLIS+GKAA++GY SVRLPI+ +A+WK Sbjct: 159 VPVMLISVGKAADSGYQSVRLPIEKVAEWK 188 >ref|NP_463636.1| similar to NADH oxidase [Listeria monocytogenes EGD-e] pir||AH1087 NADH oxidase homolog lmo0103 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC98318.1| lmo0103 [Listeria monocytogenes] Length = 210 Score = 266 bits (680), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 158/208 (75%) Query: 3 TTQTNDFTSIITGRRSIRKYDPSVKISKAEMTEILTEATLAPSSVNMQPWRFLVIESAEG 62 T NDF ++ RRSIR+YD +VKIS+ EM IL +A APSSVNMQPWRF+V+ES G Sbjct: 2 TYLNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPSSVNMQPWRFVVVESDAG 61 Query: 63 KAKLAPLAKFNQQQVETSAAVIAVFVDMNNFDYAEEIYGTAVERGLMPAEVKERQLAALG 122 K KL+ L +FN +Q E+S+A+I VF D+ NF+ E+IYG +VERGLMPAEVKE+Q+A L Sbjct: 62 KEKLSSLVRFNTRQNESSSAMILVFGDLQNFENGEKIYGESVERGLMPAEVKEQQMAKLS 121 Query: 123 AHFANLPAAVNRETIMIDGGLASMQLMLAARAHGYDTNPIGGFEKDQIAEVFGMDKERYI 182 +FA++P + ++IDGG+ +MQLML ARAHGYDTNPIGGFE+ ++AE F MD ERY+ Sbjct: 122 QYFASIPRSEAERVVLIDGGIVAMQLMLVARAHGYDTNPIGGFERTEVAEAFNMDPERYV 181 Query: 183 PVMLISIGKAAEAGYASVRLPIDTIAQW 210 PVM++SIGKA +GY S RLPI + + Sbjct: 182 PVMIVSIGKAKNSGYQSYRLPITDVTTF 209 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 272,252,737 Number of extensions: 9748644 Number of successful extensions: 26511 Number of sequences better than 1.0e-05: 218 Number of HSP's gapped: 26425 Number of HSP's successfully gapped: 218 Length of query: 211 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 91 Effective length of database: 431,425,698 Effective search space: 39259738518 Effective search space used: 39259738518 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 123 (52.0 bits)