BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0022.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390782.1| similar to antibiotic resistance protein [Bacil... 458 e-127 ref|NP_657303.1| sugar_tr, Sugar (and other) transporter [Bacill... 440 e-122 ref|NP_833128.1| Chloramphenicol resistance protein [Bacillus ce... 437 e-121 ref|NP_847486.1| major facilitator family transporter [Bacillus ... 418 e-115 ref|NP_834726.1| Chloramphenicol resistance protein [Bacillus ce... 417 e-115 >ref|NP_390782.1| similar to antibiotic resistance protein [Bacillus subtilis] pir||C69988 chloramphenicol resistance protein homolog ytbD - Bacillus subtilis gb|AAC00407.1| YtbD [Bacillus subtilis] emb|CAB14864.1| ytbD [Bacillus subtilis subsp. subtilis str. 168] Length = 396 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 239/395 (60%), Positives = 278/395 (70%) Query: 1 MSLDRKKSTXXXXXXXISAFAIGTTEFISVGLLPLISDDLHISVTTAGLTVTLYALGVTF 60 M+ K + +SAFAIGTTEFISVGLLPLI+DDL I VTTAGLTV+LYALGVTF Sbjct: 1 MTSANKSNIPALLALAVSAFAIGTTEFISVGLLPLIADDLDIPVTTAGLTVSLYALGVTF 60 Query: 61 GAPVLTSLTTAISRKTXXXXXXXXFIAGNSLAAAAGGISMLLAARILSALSHGLFMSIAS 120 GAP+LTSLT+++SRKT FIAGN++AA A I +LLAAR++SA SHG+FMSI S Sbjct: 61 GAPILTSLTSSMSRKTLLLWIMFIFIAGNTMAATASSIGILLAARVISAFSHGVFMSIGS 120 Query: 121 TIAADLVTEDRRASAISMMFTGLTVATVTGVPLGTFLGQQLGWRXXXXXXXXXXXXXXXX 180 TIAAD+V ED+RASAIS+MFTGLTVATVTGVP GTF+GQQ GWR Sbjct: 121 TIAADIVPEDKRASAISIMFTGLTVATVTGVPFGTFIGQQFGWRFAFMVIIAVGIIAFIT 180 Query: 181 XXXXXXXXXRKGTRTPLREQVKLVTNGRLLLAFAITALGYGGTFVVFTYLSPLLHEISGF 240 RKGT+T +R+Q+KLVTN RLLL F ITALGYGGTFVVFTYLSPLL E++GF Sbjct: 181 NGILVPSKLRKGTKTTMRDQLKLVTNSRLLLLFVITALGYGGTFVVFTYLSPLLQEVTGF 240 Query: 241 QEQTVAVILLVYXXXXXXXXXXXXXXXNRKPLNALFYMFAFQAAVLLVLTFTAPFKAAAL 300 + TVAVILL Y NR P+ ALFYMF QA VL VLTFTAP++AA L Sbjct: 241 KAGTVAVILLGYGIAIAIGNMIGGKLSNRNPIAALFYMFIVQAIVLFVLTFTAPYQAAGL 300 Query: 301 ITIFFMGLLAFMNVPGLQVYVVMLADRFAPSARDVASXXXXXXXXXXXXXXXXXXXXVTD 360 ITI MGLLAFMNVPGLQVYVVMLA+RF PSA DVAS +TD Sbjct: 301 ITILCMGLLAFMNVPGLQVYVVMLAERFVPSAVDVASAMNIAAFNAGIALGSYLGGVITD 360 Query: 361 HLGLVHTPWIGSIMVLGAVVLTAWSRALENRDGRK 395 +GL+HT WIG +MV+GAV+LT WSR +E RD ++ Sbjct: 361 SIGLIHTAWIGGLMVVGAVILTGWSRLMEKRDRQE 395 >ref|NP_657303.1| sugar_tr, Sugar (and other) transporter [Bacillus anthracis A2012] ref|NP_845730.1| major facilitator family transporter [Bacillus anthracis str. Ames] gb|AAP27216.1| major facilitator family transporter [Bacillus anthracis str. Ames] Length = 404 Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust. Identities = 230/391 (58%), Positives = 264/391 (67%) Query: 5 RKKSTXXXXXXXISAFAIGTTEFISVGLLPLISDDLHISVTTAGLTVTLYALGVTFGAPV 64 ++S ISAF IGTTEF+SVGLLP IS DLH+SVTTAGLTV+LYALGV FGAPV Sbjct: 14 NRRSIFALLALAISAFGIGTTEFVSVGLLPSISKDLHVSVTTAGLTVSLYALGVAFGAPV 73 Query: 65 LTSLTTAISRKTXXXXXXXXFIAGNSLAAAAGGISMLLAARILSALSHGLFMSIASTIAA 124 LTSLT +SRKT FI GN +AA A ++LL ARI+SALSHG+FMSI STIAA Sbjct: 74 LTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIVSALSHGVFMSIGSTIAA 133 Query: 125 DLVTEDRRASAISMMFTGLTVATVTGVPLGTFLGQQLGWRXXXXXXXXXXXXXXXXXXXX 184 LV E++RASAI++MFTG+TVAT+TG P+GTF+GQQ GWR Sbjct: 134 ALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSIL 193 Query: 185 XXXXXRKGTRTPLREQVKLVTNGRLLLAFAITALGYGGTFVVFTYLSPLLHEISGFQEQT 244 +KGT R+Q KLVTNGRLLL F ITALGYGGTFV FTYLSPLL E++GF+ T Sbjct: 194 IPSNMKKGTSVSFRDQFKLVTNGRLLLVFIITALGYGGTFVTFTYLSPLLQEVTGFKANT 253 Query: 245 VAVILLVYXXXXXXXXXXXXXXXNRKPLNALFYMFAFQAAVLLVLTFTAPFKAAALITIF 304 V +ILLVY N P+ ALFYMF QA +L VLTFTAPFK A LITI Sbjct: 254 VTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITII 313 Query: 305 FMGLLAFMNVPGLQVYVVMLADRFAPSARDVASXXXXXXXXXXXXXXXXXXXXVTDHLGL 364 FMGL AFMNVPGLQVYVVMLA+RF PSA DVAS VT+ LGL Sbjct: 314 FMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGL 373 Query: 365 VHTPWIGSIMVLGAVVLTAWSRALENRDGRK 395 +HT W+G IMV+GAV+LTAWS +LE RD K Sbjct: 374 IHTAWVGGIMVVGAVILTAWSMSLEKRDQVK 404 >ref|NP_833128.1| Chloramphenicol resistance protein [Bacillus cereus ATCC 14579] gb|AAP10329.1| Chloramphenicol resistance protein [Bacillus cereus ATCC 14579] Length = 404 Score = 437 bits (1123), Expect = e-121, Method: Compositional matrix adjust. Identities = 227/391 (58%), Positives = 262/391 (67%) Query: 5 RKKSTXXXXXXXISAFAIGTTEFISVGLLPLISDDLHISVTTAGLTVTLYALGVTFGAPV 64 ++S ISAF IGTTEF+SVGLLP IS+DLH+SVTTAGLTV+LYALGV FGAPV Sbjct: 14 NRRSIFALLALAISAFGIGTTEFVSVGLLPSISEDLHVSVTTAGLTVSLYALGVAFGAPV 73 Query: 65 LTSLTTAISRKTXXXXXXXXFIAGNSLAAAAGGISMLLAARILSALSHGLFMSIASTIAA 124 LTSLT +SRKT FI GN +AA A ++LL ARI+SALSHG+FMSI STIAA Sbjct: 74 LTSLTANMSRKTLLMWIMIIFIIGNGIAAVATSFTVLLIARIISALSHGVFMSIGSTIAA 133 Query: 125 DLVTEDRRASAISMMFTGLTVATVTGVPLGTFLGQQLGWRXXXXXXXXXXXXXXXXXXXX 184 LV E++RASAI++MFTG+TVAT+TG P+GTF+GQQ GWR Sbjct: 134 ALVPENKRASAIAIMFTGVTVATITGAPIGTFIGQQFGWRTSFLAIVVIGIIALIANSIL 193 Query: 185 XXXXXRKGTRTPLREQVKLVTNGRLLLAFAITALGYGGTFVVFTYLSPLLHEISGFQEQT 244 +KG R+Q KL+TNGRLLL F ITALGYGGTFV FTYLSPLL E++GF+ T Sbjct: 194 IPSNMKKGASVSFRDQFKLITNGRLLLVFIITALGYGGTFVTFTYLSPLLQEVTGFKANT 253 Query: 245 VAVILLVYXXXXXXXXXXXXXXXNRKPLNALFYMFAFQAAVLLVLTFTAPFKAAALITIF 304 V +ILLVY N P+ ALFYMF QA +L VLTFTAPFK A LITI Sbjct: 254 VTIILLVYGIAIAIGNVIGGKLSNHNPIRALFYMFFIQAIILFVLTFTAPFKVAGLITII 313 Query: 305 FMGLLAFMNVPGLQVYVVMLADRFAPSARDVASXXXXXXXXXXXXXXXXXXXXVTDHLGL 364 MGL AFMNVPGLQVYVVMLA+RF PSA DVAS VT+ LGL Sbjct: 314 LMGLFAFMNVPGLQVYVVMLAERFVPSAVDVASAINIAAFNAGIALGAYLGGIVTNSLGL 373 Query: 365 VHTPWIGSIMVLGAVVLTAWSRALENRDGRK 395 +HT W+G IMV+GAV+LTAWS LE RD K Sbjct: 374 IHTAWVGGIMVVGAVILTAWSMTLEKRDQVK 404 >ref|NP_847486.1| major facilitator family transporter [Bacillus anthracis str. Ames] gb|AAP28972.1| major facilitator family transporter [Bacillus anthracis str. Ames] Length = 404 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/391 (55%), Positives = 258/391 (65%) Query: 5 RKKSTXXXXXXXISAFAIGTTEFISVGLLPLISDDLHISVTTAGLTVTLYALGVTFGAPV 64 ++S ISAF IGTTEFISVGLLP IS DL++SVTTAGLTV+LYALG GAPV Sbjct: 14 NRRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPV 73 Query: 65 LTSLTTAISRKTXXXXXXXXFIAGNSLAAAAGGISMLLAARILSALSHGLFMSIASTIAA 124 LT+LT ++SRKT FI GN +AA A ++L+ ARI+SA +HG+FMSI STIAA Sbjct: 74 LTALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTILIIARIVSAFAHGVFMSIGSTIAA 133 Query: 125 DLVTEDRRASAISMMFTGLTVATVTGVPLGTFLGQQLGWRXXXXXXXXXXXXXXXXXXXX 184 +V E++RASAI++MFTGLTVAT+TGVP+GTF+GQQ GWR Sbjct: 134 AIVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIVVIGIIAFIANSIL 193 Query: 185 XXXXXRKGTRTPLREQVKLVTNGRLLLAFAITALGYGGTFVVFTYLSPLLHEISGFQEQT 244 + G R+Q KL+ NGRLLL F ITALGYGGTFV FTYLSPLL E++GF+ T Sbjct: 194 VPSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLSPLLQEVTGFEAST 253 Query: 245 VAVILLVYXXXXXXXXXXXXXXXNRKPLNALFYMFAFQAAVLLVLTFTAPFKAAALITIF 304 V +ILLVY N P+ ALFYMF QA +L VLTFTAPFK A LITI Sbjct: 254 VTIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTFTAPFKVAGLITII 313 Query: 305 FMGLLAFMNVPGLQVYVVMLADRFAPSARDVASXXXXXXXXXXXXXXXXXXXXVTDHLGL 364 FMGL AFMNVPGLQVYVV+LA+RF PSA DVAS VT+ LGL Sbjct: 314 FMGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGL 373 Query: 365 VHTPWIGSIMVLGAVVLTAWSRALENRDGRK 395 +HT W+G +MV+ AV+LTAWS LE RD K Sbjct: 374 IHTAWVGGLMVVAAVILTAWSMTLEKRDQVK 404 >ref|NP_834726.1| Chloramphenicol resistance protein [Bacillus cereus ATCC 14579] gb|AAP11927.1| Chloramphenicol resistance protein [Bacillus cereus ATCC 14579] Length = 404 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 218/390 (55%), Positives = 258/390 (66%) Query: 6 KKSTXXXXXXXISAFAIGTTEFISVGLLPLISDDLHISVTTAGLTVTLYALGVTFGAPVL 65 ++S ISAF IGTTEFISVGLLP IS DL++SVTTAGLTV+LYALG GAPVL Sbjct: 15 RRSMFALLALAISAFGIGTTEFISVGLLPSISKDLNVSVTTAGLTVSLYALGAAVGAPVL 74 Query: 66 TSLTTAISRKTXXXXXXXXFIAGNSLAAAAGGISMLLAARILSALSHGLFMSIASTIAAD 125 T+LT ++SRKT FI GN +AA A ++L+ ARI+SA +HG+FMSI STIAA Sbjct: 75 TALTASMSRKTLLMWIMVIFIIGNGIAAVATSFTVLIIARIVSAFAHGVFMSIGSTIAAA 134 Query: 126 LVTEDRRASAISMMFTGLTVATVTGVPLGTFLGQQLGWRXXXXXXXXXXXXXXXXXXXXX 185 +V E++RASAI++MFTGLTVAT+TGVP+GTF+GQQ GWR Sbjct: 135 IVPENKRASAIAIMFTGLTVATITGVPIGTFIGQQFGWRASFMAIVVIGIIAFIAHSILV 194 Query: 186 XXXXRKGTRTPLREQVKLVTNGRLLLAFAITALGYGGTFVVFTYLSPLLHEISGFQEQTV 245 + G R+Q KL+ NGRLLL F ITALGYGGTFV FTYLSPLL E++GF+ TV Sbjct: 195 PSNLKNGVPVSFRDQFKLIKNGRLLLVFIITALGYGGTFVTFTYLSPLLQEVTGFEASTV 254 Query: 246 AVILLVYXXXXXXXXXXXXXXXNRKPLNALFYMFAFQAAVLLVLTFTAPFKAAALITIFF 305 +ILLVY N P+ ALFYMF QA +L VLTFTAPFK A LITI F Sbjct: 255 TIILLVYGIAIAIGNMVGGKLSNHNPIRALFYMFLIQAIILFVLTFTAPFKVAGLITIIF 314 Query: 306 MGLLAFMNVPGLQVYVVMLADRFAPSARDVASXXXXXXXXXXXXXXXXXXXXVTDHLGLV 365 MGL AFMNVPGLQVYVV+LA+RF PSA DVAS VT+ LGL+ Sbjct: 315 MGLFAFMNVPGLQVYVVILAERFVPSAVDVASAINIAAFNGGIALGSYIGGLVTNSLGLI 374 Query: 366 HTPWIGSIMVLGAVVLTAWSRALENRDGRK 395 HT W+G +MV+ AV+LTAWS LE RD K Sbjct: 375 HTAWVGGLMVVAAVILTAWSMTLEKRDQVK 404 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.326 0.137 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 391,817,691 Number of extensions: 11583753 Number of successful extensions: 46607 Number of sequences better than 1.0e-05: 335 Number of HSP's gapped: 46522 Number of HSP's successfully gapped: 343 Length of query: 401 Length of database: 757,237,578 Length adjustment: 128 Effective length of query: 273 Effective length of database: 409,704,906 Effective search space: 111849439338 Effective search space used: 111849439338 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 127 (53.5 bits)