BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0232.0019.p
         (83 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_00060561.1| COG2202: FOG: PAS/PAC domain [Clostridium the...    96   2e-19
ref|ZP_00064851.1| COG2202: FOG: PAS/PAC domain [Microbulbifer d...    95   5e-19
ref|NP_923664.1| two-component hybrid sensor and regulator [Gloe...    95   6e-19
ref|NP_682072.1| two-component hybrid sensor and regulator [Ther...    95   6e-19
ref|ZP_00150184.1| hypothetical protein Daro319101 [Dechloromona...    94   8e-19

>ref|ZP_00060561.1| COG2202: FOG: PAS/PAC domain [Clostridium thermocellum ATCC 27405]
          Length = 902

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/73 (58%), Positives = 57/73 (78%)

Query: 2   LTLEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYA 61
           + L+FTV DTGIGI  DKM+ LF+ F+Q+ S+I RK+GGTGLGL+I K LVE+MGGEI+ 
Sbjct: 565 VKLKFTVSDTGIGIDGDKMNMLFKSFSQVDSSITRKYGGTGLGLAISKQLVEMMGGEIWV 624

Query: 62  KPDAGQGAVFVFT 74
           +   G+G+ F FT
Sbjct: 625 ESQKGKGSTFYFT 637


>ref|ZP_00064851.1| COG2202: FOG: PAS/PAC domain [Microbulbifer degradans 2-40]
          Length = 1368

 Score = 95.1 bits (235), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/77 (54%), Positives = 54/77 (70%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L  +V DTGIGIP DK+S LF  FTQ+ S+  R++GGTGLGLSICKML  +MGG+I+   
Sbjct: 830 LRCSVTDTGIGIPSDKISGLFDSFTQVDSSTTRRYGGTGLGLSICKMLTRIMGGDIFVVS 889

Query: 64  DAGQGAVFVFTIQVSEG 80
           + G+G  F F + V  G
Sbjct: 890 EVGKGTRFDFVVHVETG 906


>ref|NP_923664.1| two-component hybrid sensor and regulator [Gloeobacter violaceus]
 dbj|BAC88659.1| two-component hybrid sensor and regulator [Gloeobacter violaceus
           PCC 7421]
          Length = 856

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 54/72 (75%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           L F V DTGIGIP ++M  LF+PF+Q+ ++  R++GGTGLGL+ICK L ELM G I+ + 
Sbjct: 640 LHFAVRDTGIGIPAERMDRLFKPFSQVDASTTRRYGGTGLGLAICKRLAELMDGRIWVES 699

Query: 64  DAGQGAVFVFTI 75
           + G+G+ F FTI
Sbjct: 700 EPGRGSTFSFTI 711


>ref|NP_682072.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
 dbj|BAC08834.1| two-component hybrid sensor and regulator [Thermosynechococcus
            elongatus BP-1]
          Length = 1353

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/78 (53%), Positives = 59/78 (75%), Gaps = 1/78 (1%)

Query: 4    LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
            L+F V+DTGIGIP+D++  LF+PF+Q+ ++  R++GGTGLGL I K L ELMGG++  + 
Sbjct: 975  LQFQVQDTGIGIPRDRLDRLFKPFSQVDASTTREYGGTGLGLVISKRLCELMGGDMSVES 1034

Query: 64   DAGQGAVFVFTIQVSEGQ 81
              GQG  F FTI ++EGQ
Sbjct: 1035 TEGQGTTFTFTI-LAEGQ 1051


>ref|ZP_00150184.1| hypothetical protein Daro319101 [Dechloromonas aromatica RCB]
          Length = 804

 Score = 94.4 bits (233), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 56/73 (76%)

Query: 4   LEFTVEDTGIGIPQDKMSYLFQPFTQISSTINRKFGGTGLGLSICKMLVELMGGEIYAKP 63
           LEF+V D+GIGIP DK S LF+PF+Q  S+  R++GGTGLGLSI + L E+MGGE+  + 
Sbjct: 573 LEFSVSDSGIGIPVDKQSLLFKPFSQADSSTTREYGGTGLGLSIVRRLAEMMGGEVGVES 632

Query: 64  DAGQGAVFVFTIQ 76
           ++GQGA F F I+
Sbjct: 633 ESGQGARFWFRIR 645


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.320    0.140    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 125,188,799
Number of extensions: 4588467
Number of successful extensions: 17055
Number of sequences better than 1.0e-05: 1788
Number of HSP's gapped: 18061
Number of HSP's successfully gapped: 1794
Length of query: 83
Length of database: 757,237,578
Length adjustment: 52
Effective length of query: 31
Effective length of database: 616,052,430
Effective search space: 19097625330
Effective search space used: 19097625330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 120 (50.8 bits)