BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0015.p (1026 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halo... 409 e-112 ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halo... 401 e-110 ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase... 353 2e-95 ref|ZP_00075077.1| COG0642: Signal transduction histidine kinase... 267 1e-69 ref|ZP_00071137.1| COG0642: Signal transduction histidine kinase... 263 2e-68 >ref|NP_242879.1| BH2013~unknown conserved protein [Bacillus halodurans] pir||E83901 hypothetical protein BH2013 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05732.1| BH2013~unknown conserved protein [Bacillus halodurans] Length = 914 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 270/798 (33%), Positives = 428/798 (53%), Gaps = 39/798 (4%) Query: 250 MSAFVYILTHGEKLIASGLPGLPYEIVLKLQLISST---LVYYYLLRYVANSINYPMPQA 306 +SAF +L E+L+ +P L YE +KL +S T L + +RY+ + NY Q+ Sbjct: 125 LSAF-SVLVSDERLLLQWVP-LNYEWFIKLAYLSYTGLSLFFLLFVRYLFS--NYKRNQS 180 Query: 307 VMKASKFITSLLLVIAVCVPAYYFSFLETLLLTWGSVSLSFVLYVMVKGT-KQQPKNMFL 365 V S F L I + PA +LL ++ + ++ ++V+ K++ ++FL Sbjct: 181 VRWISGFCALYALFILIA-PATTIREWTIMLLFVLAIPFTTIILLVVQVILKKERDSLFL 239 Query: 366 MMVSIESLSVVILYYLIS----------ISRVHLSYNVVSYEIVLFGFVQAIVMTRKYKS 415 ++ +I S++ IL+ + +S++ S+ V + F R +++ Sbjct: 240 LLAAI-SVASSILWSSFTGRVKSFEWGILSQIDYSFYPVDLTLAFLCF-STFWFIRFFRA 297 Query: 416 SFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIVNMAQTLAEGASGSLSPQQKGQL 475 + + + L +L KD F+A+TS+ELR PL G++N+AQ + E G L+P+ + L Sbjct: 298 NDDKAD-LVTKLQKEHVKKDQFLANTSHELRNPLHGMINIAQGVVEQEGGRLAPESRQNL 356 Query: 476 SMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLRMVASSVMEVTSHISAXXXXXXX 535 ++++ G+R+ L+ND+ D K+ + L +Q +L ++V+ V + Sbjct: 357 ELLMTVGRRMSYLLNDLIDVTKMKQKKVTLTKQPTNLLAAVTTVVNVQRFMVEAKNLRIE 416 Query: 536 XXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVITLSAKVIEEYVAVIVADTGQGIA 595 QILFNL+ NA+ +T +G I + AKV ++ + V DTG G+ Sbjct: 417 VNIPHDFPLVYADETRLGQILFNLVHNAIKYTEEGTIVIEAKVKKKRAVIRVKDTGIGMD 476 Query: 596 PERLGTIFXXXXXXXXXXKKIYHE---LGLGLSITQKLVELNGGRIEVQSTPGEGSEFTF 652 E IF K+ YHE GLGLSI + LV ++ G + VQS P +GS FTF Sbjct: 477 EETQKRIFHPYEQGA---KEHYHENGGFGLGLSICRDLVSMHNGTLAVQSAPSKGSIFTF 533 Query: 653 TLPIL-----KEKTAFTDQEVL---EPTGWETAAAMXXXXXXXXXXXXXXXCCFILIVDN 704 TLP+ +EK QEV+ E E AA ILIVD+ Sbjct: 534 TLPLASSSEREEKQRDAGQEVVRFREHKIDEEVAASHLPTSAPVRTEGLERKPKILIVDD 593 Query: 705 DPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDWVMPGMSGFVLCKAIR 764 D VN VL N + E +T+ SG E L ++ DLI+ D +MP MSG+ L + IR Sbjct: 594 DAVNLHVLKNIICSEAYTIEAVTSGEEVLDRLDQ--GWDLILADVMMPSMSGYELTREIR 651 Query: 765 ERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKARVRTLLDMRKSIRTS 824 +F +SELP+L+LTA +PE++ F +GANDYL P+D E K R+R +++++ SI+ Sbjct: 652 NQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDALELKVRIRAVIELKHSIQER 711 Query: 825 VQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLRSSFDFQNRGQTVP 884 ++ E A+LQAQI+PHFL+N LN I S+ D LL Q+LR SFD QN VP Sbjct: 712 LRMEAAWLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLEKFGQFLRKSFDGQNIHSLVP 771 Query: 885 IEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVENAVNHGLMQKESG 944 I EL L SY+ +E+ RF +RL + +D + + +PPLSIQP+VENA+ HG+++K G Sbjct: 772 ITHELALTESYVYIEQERFGERLKVHWDKDEHVVCNLPPLSIQPLVENALKHGVLKKPEG 831 Query: 945 GTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDERTE-GGIGLRNIQRRLLKMYGAG 1003 G V + I++ + + +TDDG+GM + + ++L+ + + GIG+ N RL +++G G Sbjct: 832 GNVHIRIKKQEETVKIMITDDGVGMDKATLNNVLTRKPDQVSGIGMLNTDLRLKQLFGKG 891 Query: 1004 LSVISMPDQGTTISYTIP 1021 L V S P +GT+IS+ +P Sbjct: 892 LFVESQPGKGTSISFYVP 909 >ref|NP_242413.1| BH1547~unknown conserved protein [Bacillus halodurans] pir||C83843 hypothetical protein BH1547 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05266.1| BH1547~unknown conserved protein [Bacillus halodurans] Length = 661 Score = 401 bits (1030), Expect = e-110, Method: Compositional matrix adjust. Identities = 233/628 (37%), Positives = 361/628 (57%), Gaps = 5/628 (0%) Query: 396 YEIVLFGFVQAIVMTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIVNM 455 +++++ A V R+Y + + ++L +L + KDDF+A+TS+ELR PL I+N+ Sbjct: 31 FDLIISTTCFAAVWFRRYFTIQRKTDKLVDQLKRANKTKDDFLANTSHELRNPLHSILNL 90 Query: 456 AQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLRMV 515 ++ + E SL+ + L +++S G+R+ ++ND+ D L L Q + + + Sbjct: 91 SEGILEREKRSLNEKSVADLKIVLSVGRRMSFMLNDLLDAMSLKENTPRLMLQHLSIHTI 150 Query: 516 ASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVITLS 575 A+ V+E+ + QILFNL+ NAV T +G I+L Sbjct: 151 ANGVLEMFRFMVEGKPIRLNNQIPENIPNVLADESRVIQILFNLVHNAVKFTREGEISLE 210 Query: 576 AKVIEEYVAVIVADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVELNG 635 A V ++ V + + DTG G+ + L +F + GLGLSI+QKLVEL+G Sbjct: 211 AYVKDDRVYIAIRDTGIGMDKDALKRVFDPYEQVRSEETMVEGGFGLGLSISQKLVELHG 270 Query: 636 GRIEVQSTPGEGSEFTFTLPILKEKTAFTDQEVLEPTGWETAAAMXXXXXXXXXXXXXXX 695 G + V+STPG+GS FTF+L I K+ D +L + E A Sbjct: 271 GILTVRSTPGQGSVFTFSLQISKQTGLADDNHLLVQSDRENELAAATLSKPTISPVAYRP 330 Query: 696 CCFILIVDNDPVNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDWVMPGMS 755 IL+VD++PVN +V+A+ L E + V T SG EA+ + D E DL++ D +MP MS Sbjct: 331 R--ILVVDDEPVNLKVIASILANEAYEVKTVISGEEAIAVL-DTKEWDLVVADVMMPKMS 387 Query: 756 GFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKARVRTLL 815 G+ L K IR+RF L+ELPIL++TA +RPEDI+ F AGANDYL+ PV+L E +AR++ L Sbjct: 388 GYELTKNIRQRFTLTELPILLITARSRPEDIENGFRAGANDYLTKPVNLLELRARIKALT 447 Query: 816 DMRKSIRTSVQTEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLRSSFD 875 + ++SIR ++ E A+LQAQI+PHFL+N LNAI+++ D +LL + +L++ F Sbjct: 448 EAKQSIRDQLRMEGAWLQAQIQPHFLFNTLNAILALSEIDIKRMQKLLEVFADFLKNKFT 507 Query: 876 FQNRGQTVPIEKELELVRSYLALEKARFDDRLNIVFDLPQDTMALVPPLSIQPIVENAVN 935 F N + PIE EL V+SYL +EK RF RLN+ +++ ++P +IQP+VENAV Sbjct: 508 FTNLDELAPIEIELSTVQSYLYIEKERFAQRLNVRWEVEDCKALMIPLFTIQPLVENAVK 567 Query: 936 HGLMQKESGGTVTLSIRQLPGHLVVAVTDDGIGMTQERIADILSDE-RTEGGIGLRNIQR 994 HGL + SGG +T+ I+ ++ V VTD+G+GM + + +L++ GIGLRN Sbjct: 568 HGL-NRSSGGEITIKIKNEDTYVKVTVTDNGVGMDENIVQHLLTERPSARSGIGLRNTDM 626 Query: 995 RLLKMYGAGLSVISMPDQGTTISYTIPR 1022 RL + YG GL + S GT++S+ + + Sbjct: 627 RLKRHYGKGLHIESKLGVGTSVSFLVQK 654 >ref|ZP_00103806.1| COG0642: Signal transduction histidine kinase [Desulfitobacterium hafniense] Length = 561 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 199/505 (39%), Positives = 299/505 (59%), Gaps = 8/505 (1%) Query: 409 MTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIVNMAQTLAEGASGSLS 468 M+ KY++SF +E+LS RLV LD LKDDF+A TS+EL+ PL GI+N++Q+L +GA GSLS Sbjct: 1 MSEKYENSFKTIEKLSDRLVVLDKLKDDFLAKTSHELKTPLNGIINISQSLLDGAGGSLS 60 Query: 469 PQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLRMVASSVMEVTSHISA 528 Q + +I S GKRL +L+ D+ D++KL D+ L +D+ VA S +++ ++ Sbjct: 61 RAQAEDIRLITSIGKRLSTLVYDILDYSKLKVMDIQLHIVCLDVHQVAESTVDIFRYLIK 120 Query: 529 XXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVITLSAKVIEEYVAVIVA 588 QI NLL N++ +T G I+LS + ++ + V+ Sbjct: 121 GRPITLENKIPPNQHLIWADENRLKQIFSNLLDNSLKYTELGSISLSCRQDGGFLWIQVS 180 Query: 589 DTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVELNGGRIEVQSTPGEGS 648 DTG GI ++L IF +GLGL+ITQ+L+EL+GG+I +S PG+G+ Sbjct: 181 DTGIGIPADKLKDIFAPYEQLGEQSAN-QRGIGLGLTITQQLIELHGGQIVARSEPGQGT 239 Query: 649 EFTFTLPILKEKTAFTDQEVL--EPTGWETAAAMXXXXXXXXXXXXXXXCCFILIVDNDP 706 FTF++P+ K+ Q L + G++ + ++ IL+VD++ Sbjct: 240 SFTFSIPLAKDNKP---QRSLPGDYVGYDGSESLATEALPQTVHVGGEFS--ILVVDDEF 294 Query: 707 VNRQVLANALRLENHTVITAESGPEALLQMRDFPELDLIITDWVMPGMSGFVLCKAIRER 766 N + L N L L + V A +G AL ++ DL I D +MPG+SG+ +C+ IRE Sbjct: 295 SNLKALMNILTLNQYNVTVAINGEAALHLLKGAFHYDLCILDVMMPGISGYEVCRKIRET 354 Query: 767 FVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLREFKARVRTLLDMRKSIRTSVQ 826 + ELPIL+LTA PED++A F AGAND++ P ++RE K RV TL+ ++ S+ ++ Sbjct: 355 YSPLELPILLLTAKALPEDMEAGFRAGANDFIEKPFEVRELKCRVSTLVQLKNSMDLLLK 414 Query: 827 TEIAFLQAQIKPHFLYNALNAIISVCPDDPDMATELLLDLSQYLRSSFDFQNRGQTVPIE 886 E AFLQAQI+PHFL+NALN I S C +P A ELL +L +LRSSFDF + V +E Sbjct: 415 KETAFLQAQIRPHFLFNALNTIYSFCYTNPGKAGELLAELGVFLRSSFDFSSTASLVTVE 474 Query: 887 KELELVRSYLALEKARFDDRLNIVF 911 KEL LV++Y+A+E+ARF +L + + Sbjct: 475 KELRLVKAYVAIEEARFGSQLEVEY 499 >ref|ZP_00075077.1| COG0642: Signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 851 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 163/451 (36%), Positives = 251/451 (55%), Gaps = 16/451 (3%) Query: 382 ISISRVHLSYNVVSYEIVLFGFVQAIV-------MTRKYKSSFLEVEQLSRRLVTLDGLK 434 +S + +S+ ++ + + GF + ++ MT++ SF +E+ ++ L LD LK Sbjct: 336 LSTAAYAISHGEINQNVSIQGFKELVILAESFNKMTKELAESFNHLERKNQELQHLDQLK 395 Query: 435 DDFMADTSYELRKPLQGIVNMAQTLAEGASGSLSPQQKGQLSMIVSTGKRLGSLINDMAD 494 D+F+A+TS+ELR PL GI+ +A+++ +GA+G++S Q LSMIV +G RL +L+ND+ D Sbjct: 396 DEFLANTSHELRTPLNGIIGIAESMMDGATGNISELQNKNLSMIVVSGHRLANLVNDILD 455 Query: 495 FAKLNHGDLFLKRQAVDLRMVASSVMEVTSHISAXXXXXXXXXXXXXXXXXXXXXXXXSQ 554 F+KL H + LK +V +R V V+ + I Q Sbjct: 456 FSKLRHHSIKLKMSSVGMREVTEVVLTFSRIILKEKDVQLINAISSDLPPVEADENRIQQ 515 Query: 555 ILFNLLANAVNHTHKGVITLSAKVIE----EYVAVIVADTGQGIAPERLGTIFXXXXXXX 610 I+ NL+ NA+ T GVIT+SA++I+ +A+ V+DTG GI ++ IF Sbjct: 516 IMHNLVGNAIKFTEVGVITISAELIDLKNNPKMAITVSDTGIGIPEDKHEAIFASFEQGD 575 Query: 611 XXXKKIYHELGLGLSITQKLVELNGGRIEVQSTPGEGSEFTFTLPILKEKT-AFTDQEVL 669 ++ Y GLGL IT++LVEL+GG I V+S PG GSEFTFTL I KE +F+ + V Sbjct: 576 GSTERRYGGTGLGLPITKQLVELHGGTISVKSNPGVGSEFTFTLNISKEPVHSFSLKNVN 635 Query: 670 E-PTGWETAAAMXXXXXXXXXXXXXXXCCFILIVDNDPVNRQVLANALRLENHTVITAES 728 G ET+ + IL+VD++P+N QVL N L+ N+ V A S Sbjct: 636 NLIEGVETSVDINKNENHLIPNNGN---FHILVVDDEPINIQVLNNYLKANNYQVTQALS 692 Query: 729 GPEALLQMRDFPELDLIITDWVMPGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQA 788 G EAL + + DLI+ D +MP M+G+ +C IRE++ LP+L+LTA N+ D+ Sbjct: 693 GKEALAALENNHNFDLILLDIMMPNMTGYEVCSQIREKYPAQSLPVLMLTAKNQIADLVM 752 Query: 789 AFEAGANDYLSTPVDLREFKARVRTLLDMRK 819 F+ GANDYL+ P E R++T + + K Sbjct: 753 GFQFGANDYLTKPFAKDELLTRIQTHIKLSK 783 >ref|ZP_00071137.1| COG0642: Signal transduction histidine kinase [Trichodesmium erythraeum IMS101] Length = 1207 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 164/437 (37%), Positives = 246/437 (56%), Gaps = 26/437 (5%) Query: 409 MTRKYKSSFLEVEQLSRRLVTLDGLKDDFMADTSYELRKPLQGIVNMAQTLAEGASGSLS 468 MT++ SF +E+ ++ L LD LKD+F+A+TS+ELR PL GI+ +A ++ +GA+G +S Sbjct: 432 MTKELAESFNHLERKNQELQHLDQLKDEFLANTSHELRTPLNGIIGIADSIRDGATGPIS 491 Query: 469 PQQKGQLSMIVSTGKRLGSLINDMADFAKLNHGDLFLKRQAVDLRMVASSVMEVTSHISA 528 QK LSMIV +G RL +L+ND+ DF+KL H + L+ +V +R V V+ + I Sbjct: 492 ELQKKNLSMIVGSGHRLANLVNDILDFSKLRHCSIKLQISSVGMREVTEIVLAFSRMILE 551 Query: 529 XXXXXXXXXXXXXXXXXXXXXXXXSQILFNLLANAVNHTHKGVITLSAKVIE--EYVAVI 586 QI+ NL+ NA+ T GV+ +SA++I+ + +A+ Sbjct: 552 GKDLQLINAISSDLPPVEADENRIQQIMHNLVGNAIKFTDSGVVKVSAELIDVNKKMAIT 611 Query: 587 VADTGQGIAPERLGTIFXXXXXXXXXXKKIYHELGLGLSITQKLVELNGGRIEVQSTPGE 646 V+DTG GI ++ IF ++ Y GLGL IT+KLVEL+GG I V+ST G Sbjct: 612 VSDTGIGIPEDKYEAIFKSFEQGDGSTERQYGGTGLGLPITKKLVELHGGTISVKSTVGI 671 Query: 647 GSEFTFTLPILKE------------------KTAFTDQEVLEPTGWETAAAMXXXXXXXX 688 GSEFTFTL + ++ T + V EPT E+ Sbjct: 672 GSEFTFTLNVSEKPAQNKIIESSSLNQMSLLDTDYLAPSVPEPTYLESEINQVQTSSLPS 731 Query: 689 XXXXXXXCCFILIVDNDPVNRQVLANALRLENHTVITAESGPEAL-LQMRDF-PELDLII 746 ILIVD++PVN +L+N L L N+ VI A +G +AL + +DF P DLI+ Sbjct: 732 SSKKESEFQ-ILIVDDEPVNLTLLSNQLSLHNYQVIQANNGQKALDILAQDFLP--DLIL 788 Query: 747 TDWVMPGMSGFVLCKAIRERFVLSELPILVLTASNRPEDIQAAFEAGANDYLSTPVDLRE 806 D +MPGM+G+ + + +RE ++L +LPI++LTA NR D+ E GANDYLS P +E Sbjct: 789 LDVMMPGMTGYEVTQKVRETWLLHQLPIIMLTAKNRVSDLVMGLEVGANDYLSKPFHKKE 848 Query: 807 FKARVRTLLDMRKSIRT 823 AR++T ++++K +RT Sbjct: 849 LLARIKTHINIKK-LRT 864 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,305,334,718 Number of extensions: 50331938 Number of successful extensions: 158078 Number of sequences better than 1.0e-05: 5349 Number of HSP's gapped: 154259 Number of HSP's successfully gapped: 5673 Length of query: 1026 Length of database: 757,237,578 Length adjustment: 136 Effective length of query: 890 Effective length of database: 387,984,114 Effective search space: 345305861460 Effective search space used: 345305861460 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)