BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0232.0014.p (374 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242882.1| BH2016~unknown conserved protein [Bacillus halo... 201 2e-50 ref|ZP_00097639.1| COG3947: Response regulator containing CheY-l... 168 2e-40 ref|ZP_00097893.1| COG3947: Response regulator containing CheY-l... 166 8e-40 ref|ZP_00098701.1| COG3947: Response regulator containing CheY-l... 154 4e-36 ref|NP_349980.1| Response regulator (CheY-like receiver domain c... 150 4e-35 >ref|NP_242882.1| BH2016~unknown conserved protein [Bacillus halodurans] pir||H83901 hypothetical protein BH2016 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05735.1| BH2016~unknown conserved protein [Bacillus halodurans] Length = 337 Score = 201 bits (511), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 177/330 (53%), Gaps = 8/330 (2%) Query: 44 QERADIVFLDIGMPEMNGLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPV 103 Q + D++FLDI +P++NG++ AE + + + IV+ITAY EYA++AFELNAIDY++KPV Sbjct: 3 QHKPDLIFLDINLPDINGIDFAEQVQSILPEVHIVFITAYDEYAVKAFELNAIDYVMKPV 62 Query: 104 TSQRLGKTLERLQSREKQXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRK----LQWRT 159 RL +T+ R+ R+ I F+ L F SE G+ + WRT Sbjct: 63 QRDRLNRTINRITDRKTVEPLRSQTDSKI----ISCFQTLHFQKGSEIGKAEPIDVNWRT 118 Query: 160 SKAQEVFALLLHNRGQWILKDTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLV 219 +KA+E+FA L+ +R Q + KD +++ WP+ +K L++ +Y IRK+L + MN V Sbjct: 119 AKARELFAYLVQHRKQPVRKDVLLEFFWPESDVKKGYAQLYSAIYQIRKMLDSLQMNSTV 178 Query: 220 EFSQERYRLTYEDVSFDVEDFVRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAE 279 + Y+L DVE++ R P T+ S ++L Y+GDYL E Y WAE Sbjct: 179 VSFDKSYKLHLNGTKLDVEEWERELRQLPNITEDTLPSYRRLLETYKGDYLAEEAYLWAE 238 Query: 280 PKRKELQTAYVQMALRSAEYELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGD 339 +R+ L+T Y + Y L +A+T +Q + P E L ++ YA +GD Sbjct: 239 NERERLRTLYHSTFNKVTTYYLECGYYTDAITLCQRVQTLHPLMETSYFLLMQVYAKMGD 298 Query: 340 FVGFRKHYEKFKALLHNELGIHPGSLMDSW 369 + YEK +L E GIH +++W Sbjct: 299 NHSVKSQYEKLNHVLEAEYGIHTSDSIENW 328 >ref|ZP_00097639.1| COG3947: Response regulator containing CheY-like receiver and SARP domains [Desulfitobacterium hafniense] Length = 376 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/367 (30%), Positives = 186/367 (50%), Gaps = 8/367 (2%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMN 60 MKAILIDD++P L L ++LAK R+EI G++ +A L+ ++ F+DI MP + Sbjct: 1 MKAILIDDDQPTLFILNKMLAKIPRVEIVGEFLNAGDAYHFLKHNPVELAFVDIKMPGES 60 Query: 61 GLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSREK 120 GL+ A + +V++TAY +YA+EAFE+ A DY++KP+ +RL +T+ R+ R+ Sbjct: 61 GLDFAWRSLAEFPDLYVVFLTAYKDYAVEAFEVQAFDYIVKPIQQERLERTVSRVLQRKA 120 Query: 121 QXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFALLLHNRGQWILKD 180 L + L+ +T++ + +SK QE+FA LL +R + K Sbjct: 121 AGISSRNTVEQAKVLFVYCLGGLDLRNTNDDF--VMISSSKGQELFAYLLVHRERLTSKW 178 Query: 181 TIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSFDVEDF 240 I++ V+ P+ A T L+TTVY +RK+L+ +G + + E Y + +D D +F Sbjct: 179 RIMEDVFQGMSPQNAETYLNTTVYKLRKVLEQYGKRSAIVVASESYVMEIKDFYIDFIEF 238 Query: 241 VRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRSAEYE 300 P T+ + L+ G+ + Y W+ +++ L Y A + Y Sbjct: 239 ENKVRTLPSITEANLQEAIQTFHLFAGELFGDKDYQWSLAEKERLGDIYCSFAKKLGRYL 298 Query: 301 L---GSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALLHNE 357 L SA + +L+++ E+D E C L L+ YA D +HY+++ LL E Sbjct: 299 LENQNSALALQVFKKLVAINELD--EESHCFL-LQVYAAQNDLPSLIRHYDRYVQLLQRE 355 Query: 358 LGIHPGS 364 L I P + Sbjct: 356 LAISPSN 362 >ref|ZP_00097893.1| COG3947: Response regulator containing CheY-like receiver and SARP domains [Desulfitobacterium hafniense] Length = 319 Score = 166 bits (420), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 144/242 (59%), Gaps = 15/242 (6%) Query: 6 IDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMNGLEAA 65 +DDE+ AL+ ER++++ LE+ G + + + L ++++ D+VFLDI MP +NGL+ + Sbjct: 49 VDDERHALERFERMVSEVKELELCGLFNTGKQLLAYIKEHPLDVVFLDIEMPGINGLQLS 108 Query: 66 EHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSREKQXXXX 125 I L+ +I IV++TA+++YA+EAFEL A+DYL+KP++ RLGKT++RL + Sbjct: 109 GQILDLNETIDIVFVTAFNQYAVEAFELQAMDYLMKPLSKDRLGKTVKRLLKTKGSTDRP 168 Query: 126 XXXXXXXXXLSILGFRRLE-FLDTSEPGRKLQWRTSKAQEVFALLLHNRGQWILKDTIVD 184 I F E FLD G+ L W+ SKA+EV A L+H G + + I D Sbjct: 169 GKPF-------IQCFGGFEVFLD----GKALAWKNSKAKEVLAFLVHKEGVPVSWEKISD 217 Query: 185 LVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSFD---VEDFV 241 VWPD+ EKA TN H T Y +RK L G+ ++E + YR+ + V D +E+ + Sbjct: 218 AVWPDYNSEKAQTNFHATTYLLRKRLAEAGLARILENGRGNYRIIKDQVHCDLYQLEELI 277 Query: 242 RG 243 +G Sbjct: 278 KG 279 >ref|ZP_00098701.1| COG3947: Response regulator containing CheY-like receiver and SARP domains [Desulfitobacterium hafniense] Length = 355 Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 98/314 (31%), Positives = 172/314 (54%), Gaps = 18/314 (5%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMN 60 ++ IL+DDE+PAL +ER+ +K +EI GK+ L ++ + D+V+LDI MP MN Sbjct: 8 LRVILVDDEQPALDLMERMFSKRTDVEIIGKFLKPAEVLLSIETLKPDVVYLDIDMPGMN 67 Query: 61 GLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLERLQSREK 120 G+E A IA D + +V++TA+ +A+EAF ++A+DY+LKP+ ++L ++L R+ + Sbjct: 68 GVELAMQIAEKDEQVVLVFVTAHDRFALEAFNVHALDYILKPIVKEKLERSLCRVYKMKG 127 Query: 121 QXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFA-LLLHN--RGQWI 177 + +LG ++ + P + W T+KA+E+FA LLLH+ +W+ Sbjct: 128 MGKGKLETEGHSIEIGMLGGFEVK-IGNQMP---IHWTTAKAEELFAYLLLHDFSVSKWV 183 Query: 178 LKDTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSF-D 236 L D + WP+ + +KA +L+TT++ +++ K + ++ + Y+L + D Sbjct: 184 LMDGL----WPNTETQKAEQSLYTTIFRLKQSFKENNLGFEIQAINKTYQLIPPTKWYWD 239 Query: 237 VEDFVRGWCGTPVETDQEWASRDKVLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMALRS 296 V++ + P D + S +V+ LY+GD L Y W KR+E+ Y ++AL Sbjct: 240 VKELL-----NPQSFDSD-RSLQEVMKLYKGDLLAGKDYVWCYQKRQEIYNCYQKIALCL 293 Query: 297 AEYELGSARPREAL 310 A+ R RE L Sbjct: 294 AQDYFSQGRYREGL 307 >ref|NP_349980.1| Response regulator (CheY-like receiver domain containing) [Clostridium acetobutylicum] pir||E97316 response regulator (CheY-like receiver domain containing) [imported] - Clostridium acetobutylicum gb|AAK81320.1| Response regulator (CheY-like receiver domain containing) [Clostridium acetobutylicum] Length = 370 Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 92/366 (25%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 1 MKAILIDDEKPALQHLERLLAKDGRLEISGKYTSARLGLQHLQQERADIVFLDIGMPEMN 60 MK I++DD+K L+++L+K +E+ G + ++ L+ D+ FLDI + N Sbjct: 1 MKVIIVDDDKAMFLILKKMLSKIHNVEVIGTFDRLSTTMEFLENNEVDLAFLDIKISGDN 60 Query: 61 GLEAAEHIAVLDRSIRIVYITAYSEYAIEAFELNAIDYLLKPVTSQRLGKTLER-----L 115 G++ A+ I L + I IV+I+++ E+A+++F++ +DY++KPV+ ++L + ++R + Sbjct: 61 GIDLAKQIVNLKKQINIVFISSHKEFALDSFDVFPLDYIVKPVSQEKLERAIDRASKVII 120 Query: 116 QSREKQXXXXXXXXXXXXXLSILGFRRLEFLDTSEPGRKLQWRTSKAQEVFALLLHNRGQ 175 +S E++ I F LE ++W ++K+ E+F+ L+ N G+ Sbjct: 121 KSGEEEYKAF-----------IYCFGGLEV--RGRNNESVKWISTKSMELFSYLVINSGR 167 Query: 176 WILKDTIVDLVWPDFKPEKAVTNLHTTVYHIRKLLKTWGMNVLVEFSQERYRLTYEDVSF 235 I + ++ ++ + + + + L+T VY +RK L G+ ++ F + Y ++DV Sbjct: 168 SISRGRVIKDIFEEMELKDVESYLNTIVYQLRKALSPLGLKKIITFDSQGYSFDFKDVYV 227 Query: 236 DVEDFVRGWCGTPVETDQEWASRDK-VLSLYRGDYLDEHHYDWAEPKRKELQTAYVQMAL 294 D DF+ G + E +++ R K ++ LY+GD D+ Y WA +++ Y + Sbjct: 228 DYIDFISG-VESIKEINKDNIDRAKQLVYLYKGDLFDDKEYIWAVGEKEYASNLYSKFLG 286 Query: 295 RSAEYELGSARPREALTRLLSLQEVDPYSEEICRLALRSYADLGDFVGFRKHYEKFKALL 354 + + L + +A + L + + E+ ++ + A D + KHYE++ +L Sbjct: 287 KVCSWYLENDLINDAYSMGKKLIQYNELDSEVNKIFMNILAARRDKISLNKHYERYAKVL 346 Query: 355 HNELGI 360 ELG+ Sbjct: 347 FRELGV 352 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.321 0.137 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 522,251,998 Number of extensions: 20631102 Number of successful extensions: 75307 Number of sequences better than 1.0e-05: 469 Number of HSP's gapped: 77298 Number of HSP's successfully gapped: 469 Length of query: 374 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 247 Effective length of database: 412,420,005 Effective search space: 101867741235 Effective search space used: 101867741235 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)