BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0076.p (165 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_243531.1| 2-cys peroxiredoxin [Bacillus halodurans] >gi|2... 226 1e-58 ref|NP_389305.1| similar to 2-cys peroxiredoxin [Bacillus subtil... 223 1e-57 ref|NP_465129.1| similar to 2-cys peroxiredoxin [Listeria monocy... 216 1e-55 ref|NP_926104.1| probable peroxiredoxin [Gloeobacter violaceus] ... 216 1e-55 sp|P23161|R20K_CLOPA 20 kDa protein in rubredoxin operon (ORF C)... 216 1e-55 >ref|NP_243531.1| 2-cys peroxiredoxin [Bacillus halodurans] pir||A83983 2-cys peroxiredoxin BH2665 [imported] - Bacillus halodurans (strain C-125) dbj|BAB06384.1| 2-cys peroxiredoxin [Bacillus halodurans] Length = 183 Score = 226 bits (577), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 103/160 (64%), Positives = 127/160 (79%), Gaps = 2/160 (1%) Query: 8 GKDFGKVSLSD--YRGKWLVFFFYPLDFTFVCPTEITALSEAAAEFTALDTEILGVSIDS 65 K+FGKVSL + KW V FFYP+DFTFVCPTEIT+LS+ EF LD E++GVS D+ Sbjct: 22 NKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITSLSDRYDEFEDLDAEVIGVSTDT 81 Query: 66 VHSHKAWITTPKDSNGLGPINFPLASDITKKVASDYGVLIEEEGVALRGLFIIDPDGELK 125 +H+HKAWI T +D NGLG + +PLA+D +V+ +YGVLIEEEG+ALRGLFII P+GEL Sbjct: 82 IHTHKAWINTSRDDNGLGDLKYPLAADTNHEVSREYGVLIEEEGIALRGLFIISPEGELM 141 Query: 126 YQVVNHNDVGRSVEETLRVLQALQSGGLCAMNWKPGDKNL 165 Y VVNHN++GR V+ETLRVLQALQ+GGLC NWKPG + L Sbjct: 142 YSVVNHNNIGRDVDETLRVLQALQTGGLCPANWKPGQETL 181 >ref|NP_389305.1| similar to 2-cys peroxiredoxin [Bacillus subtilis] pir||B69867 2-cys peroxiredoxin homolog ykuU - Bacillus subtilis emb|CAA10884.1| YkuU protein [Bacillus subtilis] emb|CAB13295.1| ykuU [Bacillus subtilis subsp. subtilis str. 168] Length = 180 Score = 223 bits (569), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/167 (62%), Positives = 129/167 (77%), Gaps = 3/167 (1%) Query: 1 METVTGDGKDFGKVSLSD--YRGKWLVFFFYPLDFTFVCPTEITALSEAAAEFTALDTEI 58 ME V K+FGKVSL + KW V FFYP+DFTFVCPTEITA+S+ EF LD E+ Sbjct: 15 MEAVLA-SKEFGKVSLEENMKNDKWTVLFFYPMDFTFVCPTEITAMSDRYDEFEDLDAEV 73 Query: 59 LGVSIDSVHSHKAWITTPKDSNGLGPINFPLASDITKKVASDYGVLIEEEGVALRGLFII 118 +GVS D++H+H AWI T + NGLG + +PLA+D +V+ +YGVLIEEEGVALRGLFII Sbjct: 74 IGVSTDTIHTHLAWINTDRKENGLGQLKYPLAADTNHEVSREYGVLIEEEGVALRGLFII 133 Query: 119 DPDGELKYQVVNHNDVGRSVEETLRVLQALQSGGLCAMNWKPGDKNL 165 +P+GEL+YQ V HN++GR V+ETLRVLQALQ+GGLC NWKPG K L Sbjct: 134 NPEGELQYQTVFHNNIGRDVDETLRVLQALQTGGLCPANWKPGQKTL 180 >ref|NP_465129.1| similar to 2-cys peroxiredoxin [Listeria monocytogenes EGD-e] pir||AD1275 2-cys peroxiredoxin homolog lmo1604 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAC99682.1| lmo1604 [Listeria monocytogenes] Length = 181 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/167 (59%), Positives = 128/167 (76%), Gaps = 3/167 (1%) Query: 1 METVTGDGKDFGKVSLSDY--RGKWLVFFFYPLDFTFVCPTEITALSEAAAEFTALDTEI 58 ME V + + FGKVSL KW + FFYP+DFTFVCPTEI A+S + EF AL+ I Sbjct: 15 MEAVMPN-QTFGKVSLEKNIEDDKWTILFFYPMDFTFVCPTEIVAISARSDEFDALNARI 73 Query: 59 LGVSIDSVHSHKAWITTPKDSNGLGPINFPLASDITKKVASDYGVLIEEEGVALRGLFII 118 +G S D++HSH AW TP G+G +N+PLA+D +VASDYGVLIEEEGVALRGLFII Sbjct: 74 IGASTDTIHSHLAWTNTPIKEGGIGKLNYPLAADTNHQVASDYGVLIEEEGVALRGLFII 133 Query: 119 DPDGELKYQVVNHNDVGRSVEETLRVLQALQSGGLCAMNWKPGDKNL 165 +P GE++Y+VV+HN++GR V+E LRVLQALQ+GGLC +NW+PG+K + Sbjct: 134 NPKGEIQYEVVHHNNIGREVDEVLRVLQALQTGGLCPINWQPGEKTI 180 >ref|NP_926104.1| probable peroxiredoxin [Gloeobacter violaceus] dbj|BAC91099.1| gll3158 [Gloeobacter violaceus PCC 7421] Length = 184 Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 103/158 (65%), Positives = 125/158 (79%), Gaps = 1/158 (0%) Query: 9 KDFGK-VSLSDYRGKWLVFFFYPLDFTFVCPTEITALSEAAAEFTALDTEILGVSIDSVH 67 K+ G+ ++L+DYRGKWL+FFFYPLDFTFVCPTEI ALS+ EF LDTE+LG S DSV Sbjct: 24 KNLGEPIALTDYRGKWLIFFFYPLDFTFVCPTEILALSDRYEEFQDLDTEVLGCSCDSVF 83 Query: 68 SHKAWITTPKDSNGLGPINFPLASDITKKVASDYGVLIEEEGVALRGLFIIDPDGELKYQ 127 SH AWI+TP++ NG+ + FPL +D TK VA YGVL E+EG + RGLFIIDPDG LKY Sbjct: 84 SHWAWISTPREKNGIAGLKFPLVADFTKDVAEAYGVLNEKEGYSQRGLFIIDPDGILKYA 143 Query: 128 VVNHNDVGRSVEETLRVLQALQSGGLCAMNWKPGDKNL 165 + ++VGRSVEET+RVLQALQ+GGLC +WKPG K L Sbjct: 144 TITDDNVGRSVEETIRVLQALQNGGLCPGDWKPGQKVL 181 >sp|P23161|R20K_CLOPA 20 kDa protein in rubredoxin operon (ORF C) pir||S29119 hypothetical protein 3 - Clostridium pasteurianum gb|AAA23278.1| product homologous to the C22 protein component of alkyl hydroperoxide reductase from S.typhimurium: J.Biol.Chem (1990) 265:10535-10540; open reading frame C Length = 178 Score = 216 bits (550), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 100/165 (60%), Positives = 126/165 (76%) Query: 1 METVTGDGKDFGKVSLSDYRGKWLVFFFYPLDFTFVCPTEITALSEAAAEFTALDTEILG 60 M+ V GDG+ F +V L DY+GKWLV FFYPLDFTFVCPTEIT S+ A EF L E+L Sbjct: 14 MKAVKGDGRGFTEVKLGDYKGKWLVMFFYPLDFTFVCPTEITGFSKRAEEFRDLKAELLA 73 Query: 61 VSIDSVHSHKAWITTPKDSNGLGPINFPLASDITKKVASDYGVLIEEEGVALRGLFIIDP 120 VS DS +SH+ WI GLG INFP+ASD T +V++ YG+ IEEEG++LRGLFIIDP Sbjct: 74 VSCDSQYSHETWINQDIKQGGLGKINFPIASDKTTEVSTKYGIQIEEEGISLRGLFIIDP 133 Query: 121 DGELKYQVVNHNDVGRSVEETLRVLQALQSGGLCAMNWKPGDKNL 165 +G ++Y VV+ +VGRSV+ETLRVL+A Q+GG+CA++W GD NL Sbjct: 134 EGIVRYSVVHDLNVGRSVDETLRVLKAFQTGGMCALDWHEGDDNL 178 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.137 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 260,251,285 Number of extensions: 9871353 Number of successful extensions: 23817 Number of sequences better than 1.0e-05: 903 Number of HSP's gapped: 23156 Number of HSP's successfully gapped: 903 Length of query: 165 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 49 Effective length of database: 442,286,094 Effective search space: 21672018606 Effective search space used: 21672018606 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 121 (51.2 bits)