BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0074.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_390562.1| similar to sugar-phosphate dehydrogenase [Bacil... 427 e-118 ref|NP_299013.1| sugar-phosphate dehydrogenase [Xylella fastidio... 344 2e-93 ref|NP_825067.1| putative sugar-phosphate dehydrogenase [Strepto... 333 4e-90 ref|NP_299012.1| sugar-phosphate dehydrogenase [Xylella fastidio... 330 3e-89 ref|NP_628522.1| putative oxidoreductase [Streptomyces coelicolo... 325 8e-88 >ref|NP_390562.1| similar to sugar-phosphate dehydrogenase [Bacillus subtilis] pir||F69978 sugar-phosphate dehydrogenase homolog yrpG - Bacillus subtilis gb|AAB80886.1| YrpG [Bacillus subtilis] emb|CAB14626.1| yrpG [Bacillus subtilis subsp. subtilis str. 168] Length = 316 Score = 427 bits (1099), Expect = e-118, Method: Compositional matrix adjust. Identities = 202/316 (63%), Positives = 245/316 (77%) Query: 11 MKVSRLCLGTMNFGPITDEKEAFRIMDAALDAGINFFDTANVYGWGENSGLTETIIGRWF 70 M+VSRLCLGTMNFG TDEK AFRIMD ALD GI FFDTAN+YGWG+N+GLTE+IIG+WF Sbjct: 1 MRVSRLCLGTMNFGVDTDEKTAFRIMDEALDNGIQFFDTANIYGWGKNAGLTESIIGKWF 60 Query: 71 KQGGGRREKVVLATKVYGAMSDKLDGPNDEHGLSSYIIRRHLEGSLQRLQTDHIELYQMH 130 QGG RREKVVLATKVY +SD DGPND GLS Y IRRHLEGSL+RLQTDHIELYQMH Sbjct: 61 AQGGQRREKVVLATKVYEPISDPNDGPNDMRGLSLYKIRRHLEGSLKRLQTDHIELYQMH 120 Query: 131 HVDRSVSWDELWSAFELAVSQGKIGYVGSSNFAGWDIAVAQQEAKARGFLGLVSEQHKYS 190 H+DR WDE+W AFE V GK+ Y+GSSNFAGW + AQ EA+ R F+GLV+EQHKYS Sbjct: 121 HIDRRTPWDEIWEAFETQVRSGKVDYIGSSNFAGWHLVKAQAEAEKRRFMGLVTEQHKYS 180 Query: 191 LTCRLPELEVLPASRSLGLGVIPWSPLDGGLLGRNALKKIEGSRSGGNAERVEQYKSQLE 250 L R E+EVLPA+R LGLGV+ WSPL GGLLG ALK G+R+ A+ +E+++ QLE Sbjct: 181 LLERTAEMEVLPAARDLGLGVVAWSPLAGGLLGGKALKSNAGTRTAKRADLIEKHRLQLE 240 Query: 251 AFAELSLELGEPQDNIALAWLLANPAVTAPIIGPRTLEQFESALRSLEVLLDESVLKRLD 310 F++L ELGE + N+ALAW+LANP +TAPIIGPRT+EQ ++++E+ LD+ +L+ L+ Sbjct: 241 KFSDLCKELGEKEANVALAWVLANPVLTAPIIGPRTVEQLRDTIKAVEISLDKEILRMLN 300 Query: 311 EIFXXXXXXXXXXYAW 326 +IF YAW Sbjct: 301 DIFPGPGGETPEAYAW 316 >ref|NP_299013.1| sugar-phosphate dehydrogenase [Xylella fastidiosa 9a5c] pir||E82644 sugar-phosphate dehydrogenase XF1724 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF84533.1| sugar-phosphate dehydrogenase [Xylella fastidiosa 9a5c] Length = 329 Score = 344 bits (882), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 178/334 (53%), Positives = 227/334 (67%), Gaps = 13/334 (3%) Query: 1 VQYAKLGKSGMKVSRLCLGTMNFGPITDEKEAFRIMDAALDAGINFFDTANVYGWGENS- 59 + Y LG++G+KVSR+ LGTMNFG +TDE +F+IMD ALDAGINFFDTA+VYG + Sbjct: 1 MNYTHLGRTGLKVSRIALGTMNFGELTDEATSFKIMDTALDAGINFFDTADVYGGPQTPD 60 Query: 60 -----GLTETIIGRWFKQGGGRREKVVLATKVYGAMSDKLDGPNDEHGLSSYIIRRHLEG 114 G +E IG W Q RR+K+VLATKVY M GPND++ LS+Y IRR E Sbjct: 61 MPKGFGTSEEYIGNWLAQDKSRRDKIVLATKVYQPMET---GPNDKY-LSAYHIRRACEA 116 Query: 115 SLQRLQTDHIELYQMHHVDRSVSWDELWSAFELAVSQGKIGYVGSSNFAGWDIAVAQQEA 174 SL+RL+TDHI+LYQMHH+DR+ W+E+W AFE + +GKI YVGSSNFAGWDIA+AQ A Sbjct: 117 SLKRLKTDHIDLYQMHHIDRATPWEEIWQAFEQLIREGKITYVGSSNFAGWDIALAQCTA 176 Query: 175 KARGFLGLVSEQHKYSLTCRLPELEVLPASRSLGLGVIPWSPLDGGLLGRNALKKIEGSR 234 +R LGL SEQ Y+LT R ELE++PA R G+G+IPWSP+ GLLG LKKI R Sbjct: 177 ASRNLLGLASEQSLYNLTQRTIELEIIPALRHFGIGLIPWSPIGMGLLG-GVLKKIASGR 235 Query: 235 --SGGNAERVEQYKSQLEAFAELSLELGEPQDNIALAWLLANPAVTAPIIGPRTLEQFES 292 + G ++++ + QLEA+ L ELG+ ++ALAWLL NP VTA I GPRT+EQ + Sbjct: 236 RATPGLQAQIDKLRPQLEAYEALCDELGQTPADVALAWLLHNPVVTAAISGPRTVEQLQQ 295 Query: 293 ALRSLEVLLDESVLKRLDEIFXXXXXXXXXXYAW 326 L +L V L + L +LDEI+ YAW Sbjct: 296 NLNALSVKLSDETLAKLDEIWPGPGGEAPQAYAW 329 >ref|NP_825067.1| putative sugar-phosphate dehydrogenase [Streptomyces avermitilis MA-4680] dbj|BAC71602.1| putative sugar-phosphate dehydrogenase [Streptomyces avermitilis MA-4680] Length = 330 Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 180/318 (56%), Positives = 230/318 (72%), Gaps = 5/318 (1%) Query: 1 VQYAKLGKSGMKVSRLCLGTMNFGPITDEKEAFRIMDAALDAGINFFDTANVYGWGENSG 60 ++Y +LG++G+KVSRL LGTMNFGP TDE ++ IMDAALDAGIN+FDTANVYGWGEN G Sbjct: 1 MEYTQLGRTGLKVSRLVLGTMNFGPQTDEADSHAIMDAALDAGINYFDTANVYGWGENKG 60 Query: 61 LTETIIGRWFKQGGGRREKVVLATKVYGAMSDKLDGPNDEHGLSSYIIRRHLEGSLQRLQ 120 TE+IIG WF QGG RR+KVVLATKVYG M+ D + LS+ IRR ++ SL+RLQ Sbjct: 61 RTESIIGNWFAQGGDRRDKVVLATKVYGNMAAGGDPWPNHDKLSALNIRRAVDASLKRLQ 120 Query: 121 TDHIELYQMHHVDRSVSWDELWSAFELAVSQGKIGYVGSSNFAGWDIAVAQQEAKAR-GF 179 TD+I++YQ HHVDRS ++E+W A ++ V QGKI YVGSSNF G+ IA A + A R G Sbjct: 121 TDYIDIYQFHHVDRSTPFEEIWQAVDVLVQQGKILYVGSSNFPGYKIAQANEIAARRHGT 180 Query: 180 LGLVSEQHKYSLTCRLPELEVLPASRSLGLGVIPWSPLDGGLLGRNALKKIEGSR--SGG 237 +GLVSEQ Y+L R E+EV+PA++ GLGVIPWSPL GGLLG K+ EG R SG Sbjct: 181 IGLVSEQCLYNLAERRAEMEVIPAAQEYGLGVIPWSPLHGGLLGGVIKKEAEGGRRASGR 240 Query: 238 NAERVEQ--YKSQLEAFAELSLELGEPQDNIALAWLLANPAVTAPIIGPRTLEQFESALR 295 A+ + ++Q++++ +L + G ALAWLL P VT PI+GPRT EQ +SALR Sbjct: 241 AADSLANTAIRAQIQSYEDLLDKHGVEPGEAALAWLLTRPGVTGPIVGPRTAEQLDSALR 300 Query: 296 SLEVLLDESVLKRLDEIF 313 ++E+ L E +L LDEIF Sbjct: 301 AVELELSEELLSGLDEIF 318 >ref|NP_299012.1| sugar-phosphate dehydrogenase [Xylella fastidiosa 9a5c] pir||D82644 sugar-phosphate dehydrogenase XF1723 [imported] - Xylella fastidiosa (strain 9a5c) gb|AAF84532.1| sugar-phosphate dehydrogenase [Xylella fastidiosa 9a5c] Length = 362 Score = 330 bits (846), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 175/331 (52%), Positives = 222/331 (67%), Gaps = 11/331 (3%) Query: 3 YAKLGKSGMKVSRLCLGTMNFGPITDEKEAFRIMDAALDAGINFFDTANVYGWGENS--- 59 Y LG++G+KVSR+ LG MNFG +TDE +FRIM ALD+G+N FDTA+VYG + Sbjct: 36 YKHLGRTGLKVSRIALGCMNFGELTDEPNSFRIMSEALDSGVNLFDTADVYGGPQTPDME 95 Query: 60 ---GLTETIIGRWFKQGGGRREKVVLATKVYGAMSDKLDGPNDEHGLSSYIIRRHLEGSL 116 G +E IGRW Q RR+++VLATKVY M GPND++ LS+Y IRR E SL Sbjct: 96 KGFGTSEEYIGRWLAQDKSRRDRIVLATKVYQPMGT---GPNDKY-LSAYHIRRACEASL 151 Query: 117 QRLQTDHIELYQMHHVDRSVSWDELWSAFELAVSQGKIGYVGSSNFAGWDIAVAQQEAKA 176 +RL+TDHI+LYQMHHVDRS W E+W A E V +GKI YVGSSNFA WDIA AQ A++ Sbjct: 152 KRLKTDHIDLYQMHHVDRSTPWQEIWQAMEQLVREGKITYVGSSNFAAWDIARAQGVAES 211 Query: 177 RGFLGLVSEQHKYSLTCRLPELEVLPASRSLGLGVIPWSPLDGGLLGRNALKKIEGSR-S 235 R FLGLVSEQ Y+L R ELEV+PA R LG+G+IPWSP+ GLLG K EG R + Sbjct: 212 RNFLGLVSEQSLYNLIQRTIELEVIPAVRELGIGLIPWSPIGMGLLGGVLGKITEGRRAT 271 Query: 236 GGNAERVEQYKSQLEAFAELSLELGEPQDNIALAWLLANPAVTAPIIGPRTLEQFESALR 295 G ++++++ QLEA+ L ELG+P +ALAW++ NP VTA I GPRT+EQ L+ Sbjct: 272 PGLQAQIQKFRPQLEAYEALCRELGQPPAVVALAWVIHNPVVTAAISGPRTVEQMRENLK 331 Query: 296 SLEVLLDESVLKRLDEIFXXXXXXXXXXYAW 326 +L + L L +LDEI+ YAW Sbjct: 332 ALSLNLSSETLAKLDEIWPGPGGEAPKAYAW 362 >ref|NP_628522.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] emb|CAC08308.1| putative oxidoreductase [Streptomyces coelicolor A3(2)] Length = 330 Score = 325 bits (833), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 178/319 (55%), Positives = 226/319 (70%), Gaps = 7/319 (2%) Query: 1 VQYAKLGKSGMKVSRLCLGTMNFGPITDEKEAFRIMDAALDAGINFFDTANVYGWGENSG 60 ++Y +LG++G+KVSRL LGTMNFGP TDE + IMDAALDAG+NF DTANVYGWGEN G Sbjct: 1 MKYTQLGRTGLKVSRLVLGTMNFGPQTDESTSHDIMDAALDAGLNFVDTANVYGWGENKG 60 Query: 61 LTETIIGRWFKQGGGRREKVVLATKVYGAMSDKLDGPNDEHGLSSYIIRRHLEGSLQRLQ 120 TE IIG WF QGGGRR++ VLATKVYG M+ D + LS+ IRR ++ SL+RLQ Sbjct: 61 RTEEIIGTWFAQGGGRRDRTVLATKVYGNMAGDGDVWPNHDKLSAVNIRRAVDASLKRLQ 120 Query: 121 TDHIELYQMHHVDRSVSWDELWSAFELAVSQGKIGYVGSSNFAGWDIAVAQQEAKAR-GF 179 TD+I++YQ HH+DRS ++E+W A ++ V QGKI Y GSSNF G+ IA A + A R G Sbjct: 121 TDYIDVYQFHHIDRSTPFEEIWQAIDVLVQQGKILYAGSSNFPGYKIAQANEIAARRGGT 180 Query: 180 LGLVSEQHKYSLTCRLPELEVLPASRSLGLGVIPWSPLDGGLLGRNALKK--IEGSRSGG 237 +GLVSEQ Y+L R E+EV+PA+R GLGVIPWSPL GGLLG +KK +G R+ G Sbjct: 181 IGLVSEQCLYNLAERRAEMEVIPAARDYGLGVIPWSPLHGGLLG-GVIKKEATQGRRASG 239 Query: 238 NAE---RVEQYKSQLEAFAELSLELGEPQDNIALAWLLANPAVTAPIIGPRTLEQFESAL 294 A + + + Q++A+ +L + G ALAWLL P VT PI+GPRT EQ +SAL Sbjct: 240 RAADALKDTKTREQIQAYEDLLDKHGLQPGEAALAWLLTRPGVTGPIVGPRTQEQLDSAL 299 Query: 295 RSLEVLLDESVLKRLDEIF 313 R+LE+ L E +L LDEIF Sbjct: 300 RALELELSEELLTSLDEIF 318 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 465,480,761 Number of extensions: 19432692 Number of successful extensions: 49779 Number of sequences better than 1.0e-05: 1452 Number of HSP's gapped: 46680 Number of HSP's successfully gapped: 1453 Length of query: 326 Length of database: 757,237,578 Length adjustment: 126 Effective length of query: 200 Effective length of database: 415,135,104 Effective search space: 83027020800 Effective search space used: 83027020800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)