BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0068.p (1262 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_242880.1| BH2014~unknown [Bacillus halodurans] >gi|253810... 523 e-146 ref|NP_241227.1| BH0361~unknown [Bacillus halodurans] >gi|253810... 512 e-143 ref|NP_981779.1| LPXTG-motif cell wall anchor domain protein [Ba... 474 e-132 ref|NP_813892.1| conserved domain protein [Enterococcus faecalis... 352 5e-95 ref|NP_266307.1| hypothetical protein L148778 [Lactococcus lacti... 337 1e-90 >ref|NP_242880.1| BH2014~unknown [Bacillus halodurans] pir||F83901 hypothetical protein BH2014 [imported] - Bacillus halodurans (strain C-125) dbj|BAB05733.1| BH2014~unknown [Bacillus halodurans] Length = 1816 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 355/953 (37%), Positives = 513/953 (53%), Gaps = 39/953 (4%) Query: 31 AAEITDNIITSVTMAVYDNGVPVTDVV--YKQGAEVKLTYDWELPD-NTYQEGDTYSFEL 87 A+EI +NIIT V + D + D G + +TY W LP+ + Y G T++F+L Sbjct: 228 ASEIAENIITGVEVRDEDGNILQADSTNHLDLGDPIGITYHWSLPNGHGYTAGSTFTFQL 287 Query: 88 PDHFVLASDIMGTPLQADGLTLGHFDVLKGNPNKVIMTFGQDVDKYFGVHGSFSINTKFD 147 PD F L +DI PL +G +G F + + V MTF + +++ F ++G + T+ Sbjct: 288 PDVFHLYNDIENEPLVFNGTEVGTFTITQDG--TVTMTFNEMIEQLFNINGMLQVWTEI- 344 Query: 148 KASFTETTEQHIVFPVNGGNQ-TVTLEFVPDNASIIEKSGRPVGTNKDGLNAKQITWTVD 206 K + IVF V + ++F +AS+I+K G G NA +ITWTVD Sbjct: 345 KEDLQGDVRRDIVFEVKDEELLRLPVQFRVPSASMIDKQG----IVDRGYNATEITWTVD 400 Query: 207 VNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEIPSSQYAVTDPSG 266 NK + + +A + D I G AL ++VYELNV+L+GS VQG + S Y++ G Sbjct: 401 FNKQMREIDNAVLRDPIQLGQAL-QAGSIEVYELNVQLNGSVVQGDLVDPSNYSIGQIDG 459 Query: 267 NLNVAFKQSPITGAYRIQFTTDITDLTKKSFTNEASLKGTALPASKSSATVNVSYGTPLK 326 + + I AYR+ F TDITD S+ N A+L G + ++A+V G P+ Sbjct: 460 D-DFQINFGDIDSAYRVVFKTDITDGDATSYQNVATLDGDNIDPMPANASVGTQRGVPIA 518 Query: 327 KTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNAG 386 KTS+ Y+ TQT +WEI YNYNE VA+A+A+L D+F N+QEL+ S +V ++ N G Sbjct: 519 KTSTGYNSATQTISWEIRYNYNEKTVAEADAILTDWFTNSQELIPGSFRVIRMTIDEN-G 577 Query: 387 GTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNTV 446 D VSN+TL S A +NGFEL+FN DIN+AYKI Y+T ++ RV + T+ NTV Sbjct: 578 NATEDEEVSNFTLTETSNA--SQNGFELQFNEDINNAYKIVYQTTSSERVLGNQTIQNTV 635 Query: 447 YSGDTYETGT-RSIRQVIIAKTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAFPNK 505 +G+ G RSI QV+ K + +Y K + W++T+N DSY+M NV + D F N Sbjct: 636 ETGEGRTAGANRSIGQVVFHKRHGTP--NYQEKTIPWTITLNDDSYEMTNVTITDVFNNG 693 Query: 506 GLKIIPGSIVVKKGDTVITTG----FSIQNEIPDTGFEVKFNSQITGPYTITYETYFDNQ 561 GL +I G+ ++ G T + G F++ GF ++F + IT P+ I Y T FD + Sbjct: 694 GLTLIDGTFTIRSGSTTLVQGVDYTFALDGA---DGFTIEFTNPITTPHVIEYVTAFDYE 750 Query: 562 WLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAEKANGYKNGSYNASSKE 621 + N AT+EW G D + TA F P + NG+KNGSYNA +KE Sbjct: 751 ARQD---KSRNVLDNVATLEWVPEGETDSRSMQATAVFAPDSNTRNNGFKNGSYNAVTKE 807 Query: 622 IIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAKLTLNTDY 681 I W++GVNYN L+ A V D I+ Q V S+E++ M + + LT DY Sbjct: 808 ITWNIGVNYNLQELHDAVVEDFIQEGQHLVADSIEVFEMGLTGGANGVNQGDLLTEGVDY 867 Query: 682 ---TVSYNEXXXXXXXXXXXXIESGYIINFKTSLKGKLVDSPAITNTANLYNEGKEESKD 738 V + I+S Y I+FKTSL +L+ N A L + ++ + Sbjct: 868 DLVMVQDGDGNPGFRVEFRDTIDSPYWISFKTSLDERLI-KQTYQNEAILSSSNTDDFR- 925 Query: 739 LTASLTIPKANEFVQKSGSQSNTKIKWTVSINYSQSYIEDAVVTDDPSDNQILLADSFKL 798 L A++++ E+V KSG Q I W ++INY+QS + +A + D PS NQILL DSF+L Sbjct: 926 LDAAVSVQHGGEYVNKSGVQDGRVIDWRININYTQSTVTNAKIVDVPSPNQILLEDSFQL 985 Query: 799 YATTVNPAGDVAKTGTPLVDGKDYELTITTDLDSGKQQFVLKFKAPIEKAYILEYESLIV 858 ++T V G + K G PL G DY L I TD D G + F L F I++AYILEY+S I Sbjct: 986 FSTNVATNGTITK-GAPLERGVDYILEIFTDED-GNETFELSFPNVIDRAYILEYKSFIY 1043 Query: 859 ANNNDKVTNKVGLTGKN-XXXXXXXXXXXXXVALSSADGVGTGTRKALKIIKADGADQSK 917 A NN+ V+N+V G V LS G G+G R ++++ K D Sbjct: 1044 AQNNEFVSNQVSFEGDEITTNESTNSSESIQVRLSGGSGTGSGERGSIEVTKVDATSGET 1103 Query: 918 LSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGYVL 970 L+GATF LY +G E++ T+ T +G A F NL Y+L+E SAP GY++ Sbjct: 1104 LAGATFVLYDSTG--EIVLRTVVTGEDGIATFANLMYDDYILRETSAPEGYLV 1154 >ref|NP_241227.1| BH0361~unknown [Bacillus halodurans] pir||A83695 hypothetical protein BH0361 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04080.1| BH0361~unknown [Bacillus halodurans] Length = 1661 Score = 512 bits (1318), Expect = e-143, Method: Compositional matrix adjust. Identities = 370/993 (37%), Positives = 520/993 (52%), Gaps = 55/993 (5%) Query: 26 NTQAHAAEITDNIITSVTMA------VYDNGVPVTDVVYKQGAEVKLTYDWELPDNT-YQ 78 +T+A +EIT+NI+TSV + ++ N P D+ G+ V++ Y+W+L +N Y Sbjct: 213 STEASGSEITENILTSVQLKDEEGNLIHANENP--DLRPALGSAVEVIYNWKLRNNHGYT 270 Query: 79 EGDTYSFELPDHFVLASDIMGTPL---QADGLTLGHFDVLKGNPNKVIMTFGQDVDKYFG 135 G T++F+LPD F ++I PL QA+ T+G F+V V MTF + +++ Sbjct: 271 AGSTFTFQLPDAFRFYNNIENEPLVFTQAN-TTVGSFNVT--TDGTVTMTFNESIEQLSN 327 Query: 136 VHGSFSINTKFDKASFTETTEQHIVFPVNGGN-QTVTLEFVPDNASIIEKSGRPVGTNKD 194 + G+ + T+F + Q I F ++ +EF I+K G T Sbjct: 328 IRGNLHLWTEF-REDLQGDRLQVIHFEAKDEVIASIPVEFENATGHSIDKRGVVDQT--- 383 Query: 195 GLNAKQITWTVDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEI 254 NA +I WTVD NK L + A + D I G AL +KVYELNV+LDGS VQGAE+ Sbjct: 384 -FNATEIKWTVDFNKQLQPIEQAILKDPIQTGQALR-AGSIKVYELNVQLDGSVVQGAEV 441 Query: 255 PSSQYAVTDPSGN-LNVAFKQSPITGAYRIQFTTDITDLTKKSFTNEASLKGTALPASKS 313 S Y + GN + F I AYR++F TDIT+ + N A+L G + + Sbjct: 442 DPSSYTIEQVDGNDFQIVF--GSIDSAYRVEFITDITNRNATYYMNRATLTGENIDDLSA 499 Query: 314 SATVNVSYGTPLKKTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADS 373 A V GTPL K S+ YDP TQT TWEI YNY+ + QA+AVL D F N+ L+ DS Sbjct: 500 DAGVWTHRGTPLSKASTGYDPATQTITWEIKYNYDGKLIRQADAVLTDLFTNSHILLDDS 559 Query: 374 LQVFPVSFLTNAGGTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKAT 433 ++V+ V+ + G V VSNY++ T+ NGF L+F D+ +YKI Y+T A Sbjct: 560 MKVYRVT-INEHGNEVSTEEVSNYSV--NGTSDEDHNGFVLQFTEDVQDSYKIIYQTTAA 616 Query: 434 GRVEKDTTVTNTVYSGDTYETGTRSIRQVIIAKTLPSSGIDYANKKVKWSVTINADSYQM 493 R +D T+ NTV +GD +R++ Q K IDYA K V W N + ++ Sbjct: 617 ERGFEDATIENTVTTGDHEAKTSRTVHQQTFNKW--RGQIDYAKKTVAWEYFFNEERQEL 674 Query: 494 DNVIVKDAFPNKGLKIIPGSIVVKK-----GDTVITTGFSIQNEIPDTGFEVKFNSQITG 548 NVI+ D F N GL +I S + + + G + +TGF ++F + IT Sbjct: 675 TNVIISDVFANGGLTLIEDSFTITSFPSTDEEVTLENGNDYRVVTNETGFTIEFMAPITE 734 Query: 549 PYTITYETYFDNQWLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAEKAN 608 P+ + YET FD + A D A N AT++W + S + K + F P + N Sbjct: 735 PHHVRYETTFD--FDARD-DKNKAFLENGATLQW-QTSSGNTMKKEGKSEFHPDTFTRNN 790 Query: 609 GYKNGSYNASSKEIIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGD- 667 G+KNG YNA+SKEI W++GVNYN + L A V D + Q + S+E+Y M + D Sbjct: 791 GFKNGLYNATSKEITWNIGVNYNLHTLEHAIVEDFVREGQRLLMDSIEVYEMGLLGWWDG 850 Query: 668 YSQGTAKLTLNTDYTVSY---NEXXXXXXXXXXXXIESGYIINFKTSLKGKLVDSPAITN 724 SQG +KL TDY + E I+S Y I FKTSL+ L+ S N Sbjct: 851 VSQG-SKLEEGTDYVIEAVEDGEGHPGFQVRFLNTIDSAYWITFKTSLEDTLIKS-NYPN 908 Query: 725 TANLYNEGKEESKDLTASLTIPKANEFVQKSGSQSNTKIKWTVSINYSQSYIEDAVVTDD 784 A L ++ E+ ++ AS+++ EFV KSG+Q+ I W+++IN+SQS I +A + D+ Sbjct: 909 RATLKSDNAEDF-NVDASVSVRHGGEFVTKSGAQNGRLIDWSLNINFSQSSISNAKIVDE 967 Query: 785 PSDNQILLADSFKLYATTVNPAGDVAKTGTPLVDGKDYELTITTDLDSGKQQFVLKFKAP 844 PS NQILL D+F+LYAT V P G + K G L KDY L I TD G Q F L+F Sbjct: 968 PSVNQILLEDTFRLYATNVQPNGTMTK-GDELERDKDYTLDIRTD-GEGNQHFELQFTED 1025 Query: 845 IEKAYILEYESLIVANNNDKVTNKVGLTGKNXXXXXXXXXX-XXXVALSSADGVGTGTRK 903 I+ YILEY+S I A N D VTN V L G V LS G G+G Sbjct: 1026 IDTGYILEYQSFINARNGDVVTNNVKLEGDQLTTEEVTESSGAVSVRLSGGAGTGSGETG 1085 Query: 904 ALKIIKADGADQSKLSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEIS 963 +L++ K D L GATF LY G E TL T +G+A F NL G YLL+E S Sbjct: 1086 SLEVTKVDADTGEVLQGATFTLYDSEG--EFAIRTLETGEDGKATFVNLLYGDYLLKEDS 1143 Query: 964 APSGYVLD-SGKKAVTFDSTTAIVEEFKVYNQK 995 AP GY++ + + VT D+ ++ E V N+K Sbjct: 1144 APEGYLVGINDTQRVTIDT---VLHEVTVENEK 1173 >ref|NP_981779.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus ATCC 10987] gb|AAS44387.1| LPXTG-motif cell wall anchor domain protein [Bacillus cereus ATCC 10987] Length = 3242 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 339/962 (35%), Positives = 515/962 (53%), Gaps = 57/962 (5%) Query: 33 EITDNIITSVTMAVYDNGVPV--TDVVYKQGAEVKLTYDWELPDN-TYQEGDTYSFELPD 89 +IT+NI+T VT+ D G P TD + K+ + WE+ ++ ++ D + F+LP+ Sbjct: 307 QITENILTGVTLTDKD-GKPFNNTDNRPNPDSITKIDFTWEVLESLNVKKDDYFIFQLPE 365 Query: 90 HFVLASDIMGTPLQADGLTLGHFDVLKGNPN-KVIMTFGQDVDKYFGVHGSFSINTKFDK 148 +F++ + I + G T+G F V P+ KV MTF + V+ Y + G +I T+F++ Sbjct: 366 YFIVHNTITEDLIDGQGNTIGSFVV---TPDGKVTMTFNEYVENYPNIAGHLNIRTEFNE 422 Query: 149 ASFTETTEQHIVFPVNGGNQTVTLEFVPDNASIIEKSG---RPVGTNKDGLNAKQITWTV 205 T TTE+ I FP+ + V L+F P I+K G RP+ TN QI W V Sbjct: 423 VKITGTTEKQIPFPIKEKDVIVELDFKPKVKKSIDKKGVPDRPINTN-------QINWKV 475 Query: 206 DVNKVLSSVYDASVTDVIPAGLALTDPLDVKVYELNVKLDGSAVQGAEIPSSQYAVTDPS 265 ++NK + +A D IP G +L + +KVY L V ++G +GAE+P +Y T S Sbjct: 476 EMNKTKDKLTNAVFQDDIPNGASLNED-SIKVYYLEVDINGKTTRGAEVPKEEYEFTSSS 534 Query: 266 GNLNVAFKQSPITGAYRIQFTTDITDLTKKSFTNEASLKGTALPASKSSATVNVSYGTPL 325 LN+AFK+ AY I++ T ITD + SF N A + ++ATV VS GT L Sbjct: 535 NKLNIAFKKE-TNKAYEIEYATKITDESVTSFKNNAKVSSKNQKDVSANATVTVSRGTHL 593 Query: 326 KKTSSAYDPNTQTTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNA 385 K +S Y+P TQT W I +N ++ + +A+A+LKD D + ++ +S+ V S+ +A Sbjct: 594 AK-NSRYNPKTQTIEWTITFNGDQRDIKKADALLKDVLDKSHKVDKNSIVVKNASY-DDA 651 Query: 386 GGTVGDTPVSNYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNT 445 G V +N+T+ GF+L+FN DINSAY I Y +KAT V KD + N Sbjct: 652 GKLVTGDNATNFTV------KETDEGFDLQFNEDINSAYVITYTSKATNDVIKDGEIENK 705 Query: 446 VYS-GDTYETGTRSIRQ--VIIAKTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAF 502 + + G +T +++Q +I ++ DY K KW++ +N ++Y +++ ++KD F Sbjct: 706 IIADGKWSQTNKVTLKQQNIIKKHNKNANDTDYNAKTTKWTIIVNDNNYVLNDAVIKDTF 765 Query: 503 PNKGLKIIPGSIVVKKGDTVITTGFSIQNEIPDTGFEVK----FNSQITGPYTITYETYF 558 GL + S + G + F ++ DTGFEVK + S + TITY T F Sbjct: 766 DYGGLTLQKDSFKITDGSRTLDPKFDYTLDVTDTGFEVKLTGDYKSNMDKTLTITYTTDF 825 Query: 559 DNQWLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTAS----FDPKPAEKANGYKNGS 614 + + L+ + + F N A + W D+N K +S FDP K NG+K GS Sbjct: 826 NYENLSKE--KNNKSFKNTANLSWI-----DINDKKNNSSSDDTFDPDYYTKGNGFKYGS 878 Query: 615 YNASSKEIIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAK 674 YNA +KEI W +G NYN P+ + D + Q+ +P S+E+ +M + G + Sbjct: 879 YNAQTKEIKWDIGFNYNNRPIKDPSIVDVLRDNQKLIPESIEVRHMKLT-GGAHGFEVGD 937 Query: 675 LTLNTDYTVS--YNEXXXXXXXXXXXXIESGYIINFKTSLKGKLVDSPAITNTANLYNEG 732 +YT+ + I S Y I+FKTSL G+ ++ N A+L +G Sbjct: 938 PVPPNEYTIENPTKDNNNTLTVHFKNEINSAYYISFKTSLAGEQINK-RYDNYADL-KDG 995 Query: 733 KEESKDLTASLTIPKANEFVQKSGSQSNTKIKWTVSINYSQSYIEDAVVTDDPSDNQILL 792 + + + I V K+ Q++ I W+VSIN SQS IE+AVVTD+P+DNQIL Sbjct: 996 SKTVTTIHGAFEITNGGSGVTKTAKQNDKYIDWSVSINASQSTIENAVVTDEPTDNQILD 1055 Query: 793 ADSFKLYATTVNPAGDVAK-TGTPLVDGKDYELTITTDLDSGKQQFVLKFKAPIEKAYIL 851 SF LY TTV G + K T L +G DY+L + TD D+GKQQF ++F I++AYIL Sbjct: 1056 EKSFHLYPTTVAVDGTLTKDTANELKEGTDYKLKVITDNDTGKQQFKVEFLHTIDRAYIL 1115 Query: 852 EYESLIVANNNDKVTNKVGLTGKNXXXXXXXXXXXXXVALSSADGVGTGT--RKALKIIK 909 EY SLI A++N+KV+NK +TG V +SS G G+ R +L+IIK Sbjct: 1116 EYRSLINADHNEKVSNKATITGHRLTLTKVEDVKFVEVKVSSGSGGGSANKGRGSLQIIK 1175 Query: 910 ADGADQS-KLSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGY 968 D DQ+ +L+GA F LY ++G++ + +TT +G A F NL KYL++E AP+GY Sbjct: 1176 VDDKDQTVRLAGAEFTLYDQTGTTAI--RPITTGDDGVAKFNNLRRDKYLIKETKAPTGY 1233 Query: 969 VL 970 V+ Sbjct: 1234 VI 1235 >ref|NP_813892.1| conserved domain protein [Enterococcus faecalis V583] gb|AAO79964.1| conserved domain protein [Enterococcus faecalis V583] Length = 1987 Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust. Identities = 295/975 (30%), Positives = 468/975 (48%), Gaps = 70/975 (7%) Query: 49 NGVPVTDVVYKQGAEVKLTYDWELPDNTYQE---GDTYSFELPDHFVLASDIMGTPLQAD 105 +G P T YK+ + ++W +P++ ++ GD + F+LP + G + A+ Sbjct: 188 DGTPATPP-YKEDVTIHWNFNWSIPEDVREQMKAGDYFEFQLPGNLKPNKPGSGDLVDAE 246 Query: 106 GLTLGHFDVLKGNPNKVIMTFGQDVDKYFGVHGSFSINTKFDKASFTETTEQHIVFPVNG 165 G G + + V TF + + +HG FS++T + + + I P Sbjct: 247 GNVYGTYTI--SEDGTVRFTFNERITSESDIHGDFSLDTHLNDSDGRGPGDWVIDIPTQE 304 Query: 166 GNQTVTLEFVPDNASIIEKSGRPVGTNKDGLNAKQITWTVDVNKVLSSVYDASVTDVIPA 225 V + VPD I+K G T N ITWTVD+N+ + + +VT+ P Sbjct: 305 DLPPVVIPIVPDTEQQIDKQGHFDRTP----NPSAITWTVDINQAMKDQTNPTVTETWPT 360 Query: 226 GLALTDPLDVKVYELNVKLDGSAVQ-GAEIPSSQYAVTDPSGNLNVAFKQSPITGAYRIQ 284 G VKVYEL + LDG+ + G E+ +Y V D +GN+ + + AYR++ Sbjct: 361 GNTFKS---VKVYELVMNLDGTIKEVGRELSPDEYTV-DKNGNVTI---KGDTNKAYRLE 413 Query: 285 FTTDITDLT------KKSFTNEASLKGTALP-ASKSSATVNVSYGTPLKKTSSAYDPNTQ 337 + T I + F N A+L P + ATV +YG L K + YD Q Sbjct: 414 YQTTIDEAVIPDGGGDVPFKNHATLTSDNNPNGLDAEATVTATYGKMLDKRNIDYDEANQ 473 Query: 338 TTTWEIDYNYNELPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNAGGTVGDTPVS-- 395 TWEI+YNY E + + AV+ D + DSL ++ V+F VG V Sbjct: 474 EFTWEINYNYGEQTIPKDQAVITDTMGDNLTFEPDSLHLYSVTFDDKGNEVVGAELVEGK 533 Query: 396 NYTLISPSTAPSGKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNTVYSG---DTY 452 +Y ++ +G F + F D+ A KI YKTK G VE D V N V G + Sbjct: 534 DYKVVI-----NGDGSFAIDFLHDVTGAVKIDYKTKVDGIVEGDVAVNNRVDVGTGQHSE 588 Query: 453 ETGTRSIRQVIIAKTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAF-PNKGLKIIP 511 + GT S +Q II T +DY N + W++ +N ++Y M+N ++ D + P GL ++P Sbjct: 589 DDGTAS-QQNIIKNT---GAVDYQNSTIGWTLAVNQNNYLMENAVITDTYEPVPGLTMVP 644 Query: 512 GSIVVKKGDT--VITTGFSIQNEIP-----DTGFEVKF---NSQITGPYTITYETYFDNQ 561 S+VVK T +T G EI +TGF+V F ++ + + ITY T+FD Sbjct: 645 NSLVVKDTTTGAQLTLGKDFMVEITRNADGETGFKVSFIGAYAKTSDAFHITYTTFFDVT 704 Query: 562 WLASDWLTTDAKFVNRATVEWTKPGSADVNTKTVTASFDPKPAEKANGYKNGSYNASSKE 621 L ++ D + N A ++WT + +++ + F P PA N K+G YNA +KE Sbjct: 705 ELDANNPALD-HYRNTAAIDWTDEAGNNHHSED-SKPFKPLPAFDLNAQKSGVYNAVTKE 762 Query: 622 IIWSVGVNYNRNPLNSAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAKLTLNTDY 681 I W++ VN + N L A +TD I Q Y+ GS+++Y +G + L TD Sbjct: 763 ITWTIAVNLSNNRLVDAFLTDPILTNQTYLAGSLKVYEGNTKPDGSVEKVKPTQPL-TDI 821 Query: 682 TVSY-NEXXXXXXXXXXXXIESGYIINFKTSLKGKLVD-SPAITNTANLYNEGKEESKDL 739 T+ +E Y+I FKTS+ K+++ S + NTA+ N+G S+D+ Sbjct: 822 TMEEPSEKNQNTWRVDFPNDSRTYVIEFKTSVDEKVIEGSASYDNTASYTNQGS--SRDV 879 Query: 740 TASLTIPKANEFVQKSGSQSN---TKIKWTVSINYSQSYIEDAVVTDDPSDNQILLADSF 796 T ++I E V+K G + W V IN +QS ++D V+TD PS NQ+L +S Sbjct: 880 TGKVSIQHGGESVKKGGEYHKDDPDHVYWHVMINGAQSVLDDVVITDTPSPNQVLDPESL 939 Query: 797 KLYATTVNPAGDVAKTGTPLV-DGKDYELTITTDLDSGKQQFVLKFKAPIEKAYILEYES 855 +Y T V G + + ++ +GKDY L +TTD ++G+Q+ V+K A IE Y +EY S Sbjct: 940 VIYGTNVTEDGTITPDKSVILEEGKDYTLEVTTDNETGQQKIVVKM-AHIEAPYYMEYRS 998 Query: 856 LI---VANNNDKVTNKVGLTGKNXXXXXXXXXXXXXVALSSADGVGTGTRKALKIIKADG 912 L+ A + D V+N+V +TG V + + G TGT+ +++ K Sbjct: 999 LVTSSAAGSTDTVSNQVSITGNGSEVVHGDDNGDVVVDIDHSGGHATGTKGKIQLKKTAM 1058 Query: 913 ADQSKLSGATFALYRKSGSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGYVLD- 971 + + L+GA F ++ ++ + + T DA G F L G+Y+L E AP GY + Sbjct: 1059 DETTILAGAHFQIWDQAKTQ--VLREGTVDATGVITFGGLPQGQYILVETKAPEGYTVSD 1116 Query: 972 --SGKKAVTFDSTTA 984 + + +T D T+ Sbjct: 1117 ELAKGRVITIDEETS 1131 >ref|NP_266307.1| hypothetical protein L148778 [Lactococcus lactis subsp. lactis] pir||G86643 hypothetical protein ybeF [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK04249.1| HYPOTHETICAL PROTEIN [Lactococcus lactis subsp. lactis] Length = 1983 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 276/942 (29%), Positives = 465/942 (49%), Gaps = 69/942 (7%) Query: 62 AEVKLTYDWELPDNTY--QEGDTYSFELPDHFVLASDIMGTPLQADGLTLGHFDVLKGNP 119 AEV++ Y W +P++ + GD + F+LPD G ++ +LG + N Sbjct: 239 AEVQIDYTWSIPEDILPLKSGDYFDFKLPD---------GVTIEQATSSLGDYGTYTINA 289 Query: 120 NKVI-MTFGQDVDKYFGVHGSFSINTKFDKASFTETTEQHIVFPVNGGNQTVTLEFVPDN 178 + + F + V+ Y + G+F + FDK E + P + P Sbjct: 290 DGTVRFVFNEKVETYHDIKGTFHYDAHFDKTIVP--GEVVVDTPTEENFPPSEIHVRPTY 347 Query: 179 ASIIEKSGRPVGTNKDGLNAKQITWTVDVNKVLSSVYDASVTDVIPAGLALTDPLDVKVY 238 I+KSG T N ++ W +++N+ L+++ +A++TD +P G V++Y Sbjct: 348 DQAIDKSGHFDKTP----NPSEVIWEININRPLNTMENATLTDPMPEGTTYES---VEIY 400 Query: 239 ELNVKLDGSAV----QGAEIPSSQYAVTDPSGNLNVAFKQSPITGAYRIQFTTDITDLTK 294 V +G + + + + Y V D +G + K + A+ + +TT I + + Sbjct: 401 PETVGKNGEIISIDKEHPLVKGTDYTV-DSNGKITFIGKYATTDQAFNVVYTTTIDESSF 459 Query: 295 KSFTNEASLKGTAL-----PASKSSATVNVSYGTPLKKTSSAYDPNTQTTTWEIDYNYNE 349 S K TA + SA+V Y P+KK N Q W I+YNYNE Sbjct: 460 PEKEGAVSFKNTATLNDGKTDTNESASVTAQYKGPIKKNGPFTTGNDQIYNWNIEYNYNE 519 Query: 350 LPVAQANAVLKDYFDNTQELVADSLQVFPVSFLTNAGGTVGDT--PVSNYTLISPSTAPS 407 +A + ++D + ELV S++++ ++F +N G +Y L+ P Sbjct: 520 -KNHKAGSFIEDTMSDAIELVNGSVKLYKITFDSNGKEIKGAQLKEGEDYKLVQD---PD 575 Query: 408 GKNGFELKFNSDINSAYKIKYKTKATGRVEKDTTVTNTVYS--GDTYETGTRSIRQVIIA 465 F+++F +DI+ A K++Y+TK V+ + T+ N+V + GD E+G + +Q I+ Sbjct: 576 NPQKFKIEFITDIDYAVKVEYQTKVKDIVDGNVTIDNSVTTDTGDNSESGGNATQQGIVK 635 Query: 466 KTLPSSGIDYANKKVKWSVTINADSYQMDNVIVKDAFPNKGLKIIPGSI-VVKK--GDTV 522 IDY N+++ W + IN+ Y M+N ++D ++GL + + ++ K G+ V Sbjct: 636 NI--DGDIDYENREIPWKIDINSPGYWMENWSLEDKM-SEGLTFLENTFQIIDKTAGNKV 692 Query: 523 IT-TGFSIQNEIPDTGFEVKFNSQIT----GPYTITYETYFDNQWLAS-DWLTTDAKFVN 576 ++ T +++ GF V FNS + Y I Y+T FD + + D KFVN Sbjct: 693 LSPTEYTLIKTT--AGFSVSFNSPLKEGTDHKYQIKYKTKFDTSVIDNGSGHEGDIKFVN 750 Query: 577 RATVEWTKPGSADVNTKTVTASFDPKPAEKANGYKNGSYNASSKEIIWSVGVNYNRNPLN 636 A++ W D +T F P P + NG K+GSYNA+SK+I W++ N+N+ L+ Sbjct: 751 DASMTWKDKNGGD-HTNNDHKEFKPIPPFQYNGQKSGSYNATSKKITWTIAANFNQQELS 809 Query: 637 SAEVTDTIEGKQEYVPGSVEIYNMIVAKNGDYSQGTAKLTLNTDYTVSYNEXXXXXXXXX 696 +A +TD I Q YV GS ++Y + KNG Y+ G A++T +D + E Sbjct: 810 NASITDPISDDQNYVSGSAKVYEATINKNGTYTLG-AEVT--SDMGIKIVESKGSVKVEL 866 Query: 697 XXXIESGYIINFKTSLKGKLVDSPAITNTANLYNEGKEESKDLTASLTIPKANEFVQKSG 756 Y++ F+TSL+G L++ N A N K+ S DL+AS+T EFV K G Sbjct: 867 PDGSTKAYVLIFETSLEGNLINQKEYKNKATFTN--KDISHDLSASVTPAHQGEFVTKDG 924 Query: 757 SQSNTK---IKWTVSINYSQSYIEDAVVTDDPSDNQILLADSFKLYATTVNPAGDVAKTG 813 SQS+T + W +++N SQS +++ VTD+PS NQ ++A +Y T+++ +G++ + Sbjct: 925 SQSSTDSNYVNWKLTVNASQSTLKNVEVTDNPSSNQYIVAKDILIYGTSIDASGNITENK 984 Query: 814 TPLVD-GKDYELTITTDLDSGKQQFVLKFKAPIEKAYILEYESLIVANN-NDKVTNKVGL 871 +++ GKDY + I TD +G Q +KF + I AY++EY +LI ++ ND VTN+ + Sbjct: 985 NIILEQGKDYSVDIQTDNSTGAQTVKIKFLSEINTAYVVEYRALITSDKANDVVTNQAHI 1044 Query: 872 TGKNXXXXXXXXXXXXXVALSSADGVGTGTRKALKIIKADGADQSKLSGATFALYR--KS 929 TG N V +++ +G G++ ++ + K G ++KL+GA L+ Sbjct: 1045 TGDN--EKIIEQDVEKDVPVTNHNGSANGSKGSVTLEKV-GPGKAKLAGAHLQLWSIGTD 1101 Query: 930 GSSEVLFNTLTTDANGEAVFKNLWPGKYLLQEISAPSGYVLD 971 G + L TD NG+ NL YLL E AP+GY LD Sbjct: 1102 GKKDKLIREGDTDKNGDLKLGNLRVTDYLLIETKAPTGYTLD 1143 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.310 0.130 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 1,689,090,574 Number of extensions: 73067237 Number of successful extensions: 146443 Number of sequences better than 1.0e-05: 28 Number of HSP's gapped: 146201 Number of HSP's successfully gapped: 42 Length of query: 1262 Length of database: 757,237,578 Length adjustment: 137 Effective length of query: 1125 Effective length of database: 385,269,015 Effective search space: 433427641875 Effective search space used: 433427641875 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 132 (55.5 bits)