BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0065.p (162 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_00149450.1| hypothetical protein Mbur047301 [Methanococco... 188 4e-47 ref|NP_243926.1| acetolactate synthase small subunit [Bacillus h... 180 1e-44 ref|ZP_00181796.1| hypothetical protein Mther006801 [Moorella th... 179 2e-44 gb|AAN87403.1| Acetolactate synthase small subunit [Heliobacillu... 176 2e-43 ref|NP_276557.1| acetolactate synthase, small subunit [Methanoth... 175 2e-43 >ref|ZP_00149450.1| hypothetical protein Mbur047301 [Methanococcoides burtonii DSM 6242] Length = 161 Score = 188 bits (477), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/158 (56%), Positives = 119/158 (75%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 MRHT+AVLV ++ GVL RV+GLF RRGFNI+S+ VG +E+ LSRM I+ GD H LEQ+ Sbjct: 1 MRHTLAVLVENKYGVLARVAGLFSRRGFNIDSLAVGTTEDPTLSRMTIIVSGDDHVLEQV 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 KQL KLIDVI+V+DL S+ V RELALIKV + + R EI+ +V FRA +D+ + SL Sbjct: 61 MKQLNKLIDVIRVIDLSSEEFVERELALIKVNTDASNRAEIIQIVNIFRARTIDVASKSL 120 Query: 124 LVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 ++V GD +KI A+ LLKP+GIKEL+RTG+ A+ RG+ Sbjct: 121 TIEVTGDVEKIKAIQTLLKPFGIKELARTGIVALNRGS 158 >ref|NP_243926.1| acetolactate synthase small subunit [Bacillus halodurans] pir||D84032 acetolactate synthase small subunit ilvN [imported] - Bacillus halodurans (strain C-125) dbj|BAB06779.1| acetolactate synthase small subunit [Bacillus halodurans] Length = 173 Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 90/159 (56%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGD-QHTLEQ 62 M+ TI LVN+ GVL R++GLF RR FNIESITVG +E +SRM V + D Q +EQ Sbjct: 1 MKRTITALVNNTSGVLNRITGLFARRHFNIESITVGVTENPTVSRMTFVVIVDNQKNIEQ 60 Query: 63 IEKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTS 122 + KQL+K +DV+KV D+ + +VARELALIKV A P +R EI VV FRAS++DIG S Sbjct: 61 VIKQLHKQVDVLKVKDITDEAIVARELALIKVVASPQQRGEIAAVVNPFRASIIDIGRES 120 Query: 123 LLVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 + VQ+ GD QK++ I+LL+PYGIKEL+RTG+TA RG+ Sbjct: 121 MTVQITGDHQKVETFIDLLRPYGIKELARTGITAFKRGS 159 >ref|ZP_00181796.1| hypothetical protein Mther006801 [Moorella thermoacetica ATCC 39073] Length = 172 Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 85/157 (54%), Positives = 117/157 (74%) Query: 4 MRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQI 63 M+ T++VLV ++PGVL RV+GLF RRG+NI+S+ VG++E +SRM IV GD+ +EQ+ Sbjct: 1 MKRTLSVLVENRPGVLTRVAGLFSRRGYNIDSLAVGRTENPAISRMTIVVDGDEQIIEQV 60 Query: 64 EKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGTTSL 123 KQL KLIDVIK+ D+ + P V REL LIKV A+P+ R EIM +V+ FRA +VDI SL Sbjct: 61 SKQLNKLIDVIKISDITNDPYVGRELILIKVNADPSVRGEIMQIVDIFRARIVDIARNSL 120 Query: 124 LVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRG 160 +++ GD KIDA+ L+P+GI+E+ RTG AM+RG Sbjct: 121 IIEATGDADKIDAIENSLRPFGIREVVRTGKIAMLRG 157 >gb|AAN87403.1| Acetolactate synthase small subunit [Heliobacillus mobilis] Length = 190 Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 85/159 (53%), Positives = 117/159 (73%) Query: 1 MTVMRHTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTL 60 T MRHT+AVLV ++PGVL +SGL RR FNIESIT G +EEA ++R+ IV GD +L Sbjct: 23 WTEMRHTLAVLVENRPGVLVHISGLIARRAFNIESITAGYTEEADITRITIVVEGDNRSL 82 Query: 61 EQIEKQLYKLIDVIKVVDLGSKPMVARELALIKVKAEPAERPEIMGVVETFRASVVDIGT 120 EQ+ QL KL+DVIK+V+L S+P + RELALIKVKA P R +I+ +VE FRA +VD+ Sbjct: 83 EQVVNQLSKLVDVIKIVELTSEPSIERELALIKVKANPETRSDIVDIVEIFRAKIVDVNR 142 Query: 121 TSLLVQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIR 159 ++++++ G+ KIDA+ E+LK +GI E+ RTG A+ R Sbjct: 143 ETMVIELTGEETKIDALCEVLKDHGIVEMVRTGKVALSR 181 >ref|NP_276557.1| acetolactate synthase, small subunit [Methanothermobacter thermautotrophicus] sp|O27492|ILVH_METTH Probable acetolactate synthase small subunit (AHAS) (Acetohydroxy-acid synthase small subunit) (ALS) pir||B69059 acetolactate synthase, small subunit - Methanobacterium thermoautotrophicum (strain Delta H) gb|AAB85918.1| acetolactate synthase, small subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 168 Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 90/157 (57%), Positives = 113/157 (71%), Gaps = 1/157 (0%) Query: 6 HTIAVLVNDQPGVLQRVSGLFGRRGFNIESITVGQSEEAGLSRMVIVTLGDQHTLEQIEK 65 H I+ LV +PGVLQRV+GLF RRGFNIE+ITVG+SE G++RM I+ GD LEQI K Sbjct: 9 HIISALVEHKPGVLQRVAGLFTRRGFNIENITVGESETPGIARMTIIARGDDRVLEQITK 68 Query: 66 QLYKLIDVIKVVDLGSKPMVARELALIKVKA-EPAERPEIMGVVETFRASVVDIGTTSLL 124 QL KLIDVIKV DL V REL ++KV A +ER EI+ FR +VD+ +L Sbjct: 69 QLNKLIDVIKVRDLEPAATVKRELCMVKVHAPSESERSEIIQYTNIFRGRIVDVSPDALT 128 Query: 125 VQVVGDTQKIDAMIELLKPYGIKELSRTGVTAMIRGN 161 V+V GD++KIDA +ELL+ +GIKEL+RTG TAM RG+ Sbjct: 129 VEVTGDSEKIDAFLELLRNFGIKELARTGPTAMSRGS 165 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.137 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 203,116,584 Number of extensions: 7073535 Number of successful extensions: 22805 Number of sequences better than 1.0e-05: 555 Number of HSP's gapped: 22306 Number of HSP's successfully gapped: 562 Length of query: 162 Length of database: 757,237,578 Length adjustment: 116 Effective length of query: 46 Effective length of database: 442,286,094 Effective search space: 20345160324 Effective search space used: 20345160324 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 121 (51.2 bits)