BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0046.p (205 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_244151.1| BH3285~unknown conserved protein [Bacillus halo... 108 6e-23 ref|NP_283739.1| hypothetical protein NMA0960 [Neisseria meningi... 105 5e-22 ref|NP_273789.1| conserved hypothetical protein [Neisseria menin... 105 5e-22 ref|NP_981186.1| conserved hypothetical protein [Bacillus cereus... 105 6e-22 ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereu... 105 6e-22 >ref|NP_244151.1| BH3285~unknown conserved protein [Bacillus halodurans] dbj|BAB07004.1| BH3285~unknown conserved protein [Bacillus halodurans] Length = 190 Score = 108 bits (271), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 68/200 (34%), Positives = 87/200 (43%), Gaps = 10/200 (5%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M + VL FA L + L PG A+D T G G DT+FLAK G G VYGFD+Q Sbjct: 1 MNLLGVLPFARFLLQNVLTPGSIAVDGTTGNGHDTVFLAKLVGETGHVYGFDVQ-----E 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 VTL SH +A +PPD + A +FNLGYLP +DKTI Sbjct: 56 QAIHQTNKRVKELGFPERVTLFHASHEQVATLIPPDQHPNIKAAIFNLGYLPG--SDKTI 113 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 +T+P ST G +I V+Y GHE G L A Sbjct: 114 VTKPESTITAIKKLLSIMPSGALIVLVIYHGHEEGKIEKTALESFVTDLEQTTAHVLRYE 173 Query: 181 IVYRQLQRASAPYTLAVEKK 200 + Q P+ +A+EK+ Sbjct: 174 FIN---QVNDPPFIIAIEKR 190 >ref|NP_283739.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] pir||G81942 hypothetical protein NMA0960 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) emb|CAB84230.1| hypothetical protein NMA0960 [Neisseria meningitidis Z2491] Length = 188 Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 88/199 (44%), Gaps = 15/199 (7%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M ++L FAH L L GG A+D T G G DTLFLA+ AG RG V+ FDIQP Sbjct: 1 MLLKNILPFAHCLLRQALPEGGNALDGTAGNGHDTLFLAQTAGIRGKVWAFDIQP----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 S V L+L H + + +P + A +FN G+LP G DK++ Sbjct: 56 -QALNNTRCRLQEAGYSNVRLILDGHENLKQYIPK----PLDAAIFNFGWLPGG--DKSL 108 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 T ++ + G++ AVLYPGHE G + LP Q Sbjct: 109 TTRTETSIAALSAALSLLKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYS 168 Query: 181 IVYRQLQRASAPYTLAVEK 199 R + S PY LA EK Sbjct: 169 FTNR---KNSPPYLLAFEK 184 >ref|NP_273789.1| conserved hypothetical protein [Neisseria meningitidis MC58] pir||B81163 conserved hypothetical protein NMB0747 [imported] - Neisseria meningitidis (strain MC58 serogroup B) gb|AAF41160.1| conserved hypothetical protein [Neisseria meningitidis MC58] Length = 188 Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 66/202 (32%), Positives = 89/202 (44%), Gaps = 15/202 (7%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M ++L FAH L L GG A+D T G G DTLFLA+ AG RG V+ FDIQP Sbjct: 1 MLLQNILPFAHCLLRKALPEGGNALDGTAGNGHDTLFLAQTAGIRGKVWAFDIQP----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 S V L+L H + + +P + A +FN G+LP G DK++ Sbjct: 56 -QALNNTRCRLQEAGYSNVRLILDGHENLKQYIPK----PLDAAIFNFGWLPGG--DKSL 108 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 T ++ + G++ AVLYPGHE G + LP Q Sbjct: 109 TTRTETSIAALSATLSLLKENGMLIAVLYPGHENGKQEAEAIEQWAKNLPQEQFAVLRYG 168 Query: 181 IVYRQLQRASAPYTLAVEKKKE 202 R + S PY L EK ++ Sbjct: 169 FTNR---KNSPPYLLVFEKLRQ 187 >ref|NP_981186.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS43794.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 190 Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 90/200 (45%), Gaps = 10/200 (5%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M VL FA L + ++ G A+DAT+G G DT FLA+ G G V+GFDIQ Sbjct: 1 MKLERVLPFARTLLQTAVKEGDYAVDATLGNGYDTCFLAEIVGDNGKVFGFDIQK----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 L+ SH + +P D +G V+ +FNLGYLP G DK I Sbjct: 56 EAIESSTTRLKEKELFERTVLVHDSHDTLLSVLPEDAKGKVTGAIFNLGYLPGG--DKHI 113 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 +T+P+ST P GII V+Y GH G L +QA Sbjct: 114 VTKPNSTISAIEQLLEVIAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYG 173 Query: 181 IVYRQLQRASAPYTLAVEKK 200 + Q+ + P+ +A+EK+ Sbjct: 174 FIN---QQNNPPFIVAIEKR 190 >ref|NP_834451.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] gb|AAP11652.1| SAM-dependent methyltransferase [Bacillus cereus ATCC 14579] Length = 190 Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 65/200 (32%), Positives = 90/200 (45%), Gaps = 10/200 (5%) Query: 1 MGFMSVLSFAHKLTEGRLQPGGRAIDATVGTGADTLFLAKAAGPRGGVYGFDIQPXXXXX 60 M VL FA L + ++ G A+DAT+G G DT FLA+ G G V+GFDIQ Sbjct: 1 MKLERVLPFARSLLQTAVKEGDYAVDATLGNGHDTCFLAEIVGDNGKVFGFDIQK----- 55 Query: 61 XXXXXXXXXXXXXXXXSPVTLLLQSHAAMAEAVPPDWRGTVSAVMFNLGYLPSGDADKTI 120 L+ SH + +P D +G V+ +FNLGYLP G DK I Sbjct: 56 EAIESSTTRLKEKELFERTVLVHDSHDTLLSILPEDAKGKVTGAIFNLGYLPGG--DKHI 113 Query: 121 ITEPSSTXXXXXXXXXXXRPGGIITAVLYPGHEGGDRXXXXXXXXXXGLPSRQAQAXXXX 180 +T+P+ST P GII V+Y GH G L +QA Sbjct: 114 VTKPNSTISAIEQLLEVMAPEGIIVLVIYHGHPEGQVERDAVLKFAEELDQKQAHVLRYG 173 Query: 181 IVYRQLQRASAPYTLAVEKK 200 + Q+ + P+ +A+EK+ Sbjct: 174 FIN---QQNNPPFIVAIEKR 190 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.317 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 234,543,356 Number of extensions: 7125164 Number of successful extensions: 13505 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 13442 Number of HSP's successfully gapped: 35 Length of query: 205 Length of database: 757,237,578 Length adjustment: 120 Effective length of query: 85 Effective length of database: 431,425,698 Effective search space: 36671184330 Effective search space used: 36671184330 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)