BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0029.p (189 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_782435.1| transcriptional regulator [Clostridium tetani E... 234 1e-60 ref|NP_720952.1| putative transcriptional regulator [Streptococc... 179 2e-44 ref|NP_654899.1| tetR, Bacterial regulatory proteins, tetR famil... 129 5e-29 ref|NP_977376.1| conserved hypothetical protein [Bacillus cereus... 127 2e-28 ref|NP_830766.1| Transcriptional regulator, TetR family [Bacillu... 127 2e-28 >ref|NP_782435.1| transcriptional regulator [Clostridium tetani E88] gb|AAO36372.1| transcriptional regulator [Clostridium tetani E88] Length = 185 Score = 234 bits (596), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/184 (59%), Positives = 142/184 (77%) Query: 4 SLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEAL 63 SL+TKK LA+SLK LM PL+KI++K + DC +NRQTFYYHFQDI++LL WIY+TEA+ Sbjct: 2 SLMTKKELANSLKKLMSIKPLDKITIKDITADCNVNRQTFYYHFQDIYDLLDWIYKTEAI 61 Query: 64 ESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQE 123 + I++Y++Y TW GF IF YI NK FC N+L SLGR HLD +LY+ T DL+M VI E Sbjct: 62 DGISEYKTYKTWQKGFLMIFQYIIHNKEFCINSLHSLGRDHLDNFLYKFTFDLLMEVINE 121 Query: 124 LAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQ 183 ++ GM+V EDK+FIANFYT AF L+I WM+ GMK+ P++II KL+ LIEG+ KAL + Sbjct: 122 VSEGMDVLNEDKKFIANFYTYAFVNLLIMWMKNGMKESPEIIIEKLNTLIEGDIEKALKK 181 Query: 184 YEKK 187 YE+K Sbjct: 182 YEQK 185 >ref|NP_720952.1| putative transcriptional regulator [Streptococcus mutans UA159] gb|AAN58258.1| putative transcriptional regulator [Streptococcus mutans UA159] Length = 188 Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 81/183 (44%), Positives = 120/183 (65%) Query: 4 SLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQTEAL 63 S TKKAL SLK L+ PL KI+++ + DDCG++R TFYYHF+DI++L+ W+ A Sbjct: 2 SQTTKKALEDSLKHLLLQKPLPKITIQDITDDCGISRMTFYYHFKDIYDLIEWVCIENAS 61 Query: 64 ESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGVIQE 123 +++ + + Y TW G RIF + ANK F N S+ R ++ YLY +T DL++ V+ E Sbjct: 62 QALGENKDYETWEEGLLRIFNAVIANKPFIMNVYHSVSREQIETYLYTLTYDLMINVVNE 121 Query: 124 LAGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFAKALHQ 183 A G++V+ E+K FIA+FY A GL++ W+R MK+DP++I+ L L+ GN ALH Sbjct: 122 KAKGLKVNDEEKNFIADFYKFALVGLMLDWIRKDMKEDPRIIVKHLDSLVHGNIVTALHH 181 Query: 184 YEK 186 Y+K Sbjct: 182 YDK 184 >ref|NP_654899.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] ref|NP_843469.1| conserved hypothetical protein [Bacillus anthracis str. Ames] gb|AAP24955.1| conserved hypothetical protein [Bacillus anthracis str. Ames] Length = 188 Score = 129 bits (323), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 69/188 (36%), Positives = 104/188 (55%), Gaps = 2/188 (1%) Query: 1 VSNSLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT 60 +++S+++KK +A+SLK LME +KISV ++ C + RQTFYYHF+D FELLGWIY+ Sbjct: 1 MTSSIISKKIIANSLKYLMETESFHKISVSDIMLHCQMRRQTFYYHFKDKFELLGWIYRE 60 Query: 61 EALESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120 E E+I + Y TW F +F Y N+ F N + + + YL+E T +L M + Sbjct: 61 ETKENIIDFLDYETWENIFDLLFDYFYENQKFYRNAFKVIEQNSFNHYLFEHTKNLYMKI 120 Query: 121 IQEL--AGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFA 178 I EL + G + E K IA+FY+ F G + W+ + DP ++ + +I Sbjct: 121 IDELSVSCGFSLSDETKNTIASFYSHGFVGTIKDWIESKCEVDPSIMSSLMKNMINNQLL 180 Query: 179 KALHQYEK 186 L Q K Sbjct: 181 LLLEQSAK 188 >ref|NP_977376.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gb|AAS39984.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] Length = 188 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 2/188 (1%) Query: 1 VSNSLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT 60 +++S+++KK +A+SLK LME +KISV ++ C + RQTFYYHF+D FELL WIY+ Sbjct: 1 MTSSIISKKIIANSLKHLMETESFHKISVSDIMLHCQMRRQTFYYHFKDKFELLSWIYRE 60 Query: 61 EALESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120 E E+I + Y TW F +F Y N+ F N + + + YL+E T +L M + Sbjct: 61 ETKENIIDFLDYETWENIFDLLFDYFYENQKFYRNAFKVIEQNSFNHYLFEHTKNLYMKI 120 Query: 121 IQEL--AGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFA 178 I EL + G + E K IA+FY+ F G + W+ + DP ++ + +I Sbjct: 121 IDELSVSCGFSLSDETKNTIASFYSHGFVGTIKDWIESKCEVDPSIMSSLMKNMINNQLL 180 Query: 179 KALHQYEK 186 L Q K Sbjct: 181 LLLEQSAK 188 >ref|NP_830766.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP07967.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 188 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 68/188 (36%), Positives = 103/188 (54%), Gaps = 2/188 (1%) Query: 1 VSNSLLTKKALAHSLKTLMEHVPLNKISVKHLVDDCGLNRQTFYYHFQDIFELLGWIYQT 60 +++S+++KK +A+SLK LME +KISV ++ C + RQTFYYHF+D FELL WIY+ Sbjct: 1 MTSSIISKKIIANSLKYLMETESFHKISVSDIMLHCQMRRQTFYYHFKDKFELLSWIYRE 60 Query: 61 EALESIAQYRSYNTWTGGFYRIFCYIEANKAFCNNTLDSLGRTHLDAYLYEVTNDLIMGV 120 E E+I + Y TW F +F Y N+ F N + + + YL+E T +L M + Sbjct: 61 ETKENIIDFLDYETWENIFDLLFDYFYENQKFYRNAFKVIEQNSFNHYLFEHTKNLYMKI 120 Query: 121 IQEL--AGGMEVDAEDKRFIANFYTLAFTGLVIHWMRGGMKDDPKVIIGKLSVLIEGNFA 178 I EL + G + E K IA+FY+ F G + W+ + DP ++ + +I Sbjct: 121 IDELSVSCGFSLSDETKNTIASFYSHGFVGTIKDWIESKCEVDPSIMSSLMKNMINNQLL 180 Query: 179 KALHQYEK 186 L Q K Sbjct: 181 LLLEQSAK 188 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.323 0.139 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 288,159,918 Number of extensions: 11619631 Number of successful extensions: 30556 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 30546 Number of HSP's successfully gapped: 30 Length of query: 189 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 70 Effective length of database: 434,140,797 Effective search space: 30389855790 Effective search space used: 30389855790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 122 (51.6 bits)