BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0231.0023.p (190 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_388896.1| alternate gene name: yixD~similar to transcript... 158 5e-38 ref|NP_830863.1| Transcriptional regulator, TetR family [Bacillu... 157 1e-37 ref|NP_977499.1| transcriptional regulator, TetR family [Bacillu... 153 2e-36 ref|NP_843573.1| transcriptional regulator, TetR family [Bacillu... 153 2e-36 ref|NP_654991.1| tetR, Bacterial regulatory proteins, tetR famil... 151 9e-36 >ref|NP_388896.1| alternate gene name: yixD~similar to transcriptional regulator (TetR/AcrR family) [Bacillus subtilis] sp|P32398|YHGD_BACSU Putative HTH-type transcriptional regulator yhgD pir||E47045 transcription regulator TetR/AcrR family homolog yhgD - Bacillus subtilis gb|AAA22520.1| ORFA emb|CAA74521.1| hypothetical transcriptional regulator [Bacillus subtilis] emb|CAB12855.1| yhgD [Bacillus subtilis subsp. subtilis str. 168] Length = 191 Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 80/188 (42%), Positives = 115/188 (61%) Query: 1 MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60 MSIDRK LIL+AATKSF QFGYKATTMD V+K+ANVGKGTIY I Sbjct: 1 MSIDRKKLILEAATKSFTQFGYKATTMDLVAKLANVGKGTIYTFFKNKEELFDEIFTTLL 60 Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEFRSDHELFVKLAQEVRDIGTVQALEGVKRM 120 +E+ + F + + L +ILEFR H+L +K+ QE +IGT+ E +++M Sbjct: 61 KEMKQKADEAMEPSLPFHENVHRALFAILEFRKTHQLTIKIFQENAEIGTMAVQEVIQKM 120 Query: 121 EEYALDFLRYQIEQAMERGEVKPCDASVAAFMIFRLYLALTTEWNKEHEPLDKNRIKEHM 180 E L +++ +IE ++ G +KPCD + AF++ +LY+AL +W K+H PLDK I + Sbjct: 121 ERSILSYIKSKIEDGIKSGAIKPCDPELTAFVMLKLYIALIFDWEKQHPPLDKETIAGLL 180 Query: 181 ILFISNGI 188 L++ G+ Sbjct: 181 ELYVVKGL 188 >ref|NP_830863.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] gb|AAP08064.1| Transcriptional regulator, TetR family [Bacillus cereus ATCC 14579] Length = 190 Score = 157 bits (396), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 79/188 (42%), Positives = 118/188 (62%) Query: 1 MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60 M+IDRK I++AATKSF FGYKATTMDQV+K+ANVGKGTIY I+ Sbjct: 1 MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI 60 Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEFRSDHELFVKLAQEVRDIGTVQALEGVKRM 120 E+ V D +F + + L SILEFR +H+L +KL QE RD+GT + E ++++ Sbjct: 61 TEMKQVAESAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV 120 Query: 121 EEYALDFLRYQIEQAMERGEVKPCDASVAAFMIFRLYLALTTEWNKEHEPLDKNRIKEHM 180 + + ++ ++ A+E+GE+ CD + AF++ RLY++L +W K HEPL+K +I E Sbjct: 121 DVEIVSVIQSYLKIAIEKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF 180 Query: 181 ILFISNGI 188 L++ G+ Sbjct: 181 ELYLLKGL 188 >ref|NP_977499.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] gb|AAS40107.1| transcriptional regulator, TetR family [Bacillus cereus ATCC 10987] Length = 190 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 118/188 (62%) Query: 1 MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60 M+IDRK I++AATKSF FGYKATTMDQV+K+ANVGKGTIY I+ Sbjct: 1 MAIDRKRSIIEAATKSFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI 60 Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEFRSDHELFVKLAQEVRDIGTVQALEGVKRM 120 E+ V + +F + + L SILEFR +H+L +KL QE RD+GT + E ++++ Sbjct: 61 TEMKQVAENAIRSEVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV 120 Query: 121 EEYALDFLRYQIEQAMERGEVKPCDASVAAFMIFRLYLALTTEWNKEHEPLDKNRIKEHM 180 + + ++ ++ A+++GE+ CD + AF++ RLY++L +W K HEPL+K +I E Sbjct: 121 DVEIVSVIQSYLKIAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF 180 Query: 181 ILFISNGI 188 L++ G+ Sbjct: 181 ELYLLKGL 188 >ref|NP_843573.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] gb|AAP25059.1| transcriptional regulator, TetR family [Bacillus anthracis str. Ames] Length = 190 Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 77/188 (40%), Positives = 117/188 (62%) Query: 1 MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60 M+IDRK I++AATK F FGYKATTMDQV+K+ANVGKGTIY I+ Sbjct: 1 MAIDRKRSIIEAATKYFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI 60 Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEFRSDHELFVKLAQEVRDIGTVQALEGVKRM 120 E+ V D +F + + L SILEFR +H+L +KL QE RD+GT + E ++++ Sbjct: 61 TEMKQVAENAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV 120 Query: 121 EEYALDFLRYQIEQAMERGEVKPCDASVAAFMIFRLYLALTTEWNKEHEPLDKNRIKEHM 180 + + ++ ++ A+++GE+ CD + AF++ RLY++L +W K HEPL+K +I E Sbjct: 121 DVEIVSVIQSYLKIAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF 180 Query: 181 ILFISNGI 188 L++ G+ Sbjct: 181 ELYLLKGL 188 >ref|NP_654991.1| tetR, Bacterial regulatory proteins, tetR family [Bacillus anthracis A2012] Length = 197 Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 76/188 (40%), Positives = 117/188 (62%) Query: 1 MSIDRKALILQAATKSFVQFGYKATTMDQVSKIANVGKGTIYXXXXXXXXXXXXILDKAS 60 ++IDRK I++AATK F FGYKATTMDQV+K+ANVGKGTIY I+ Sbjct: 8 VAIDRKRSIIEAATKYFSAFGYKATTMDQVAKLANVGKGTIYTFFKNKEELFGEIISNLI 67 Query: 61 QELTSVMNRLAAEDNTFIQKLFNLLDSILEFRSDHELFVKLAQEVRDIGTVQALEGVKRM 120 E+ V D +F + + L SILEFR +H+L +KL QE RD+GT + E ++++ Sbjct: 68 TEMKQVAENAIRSDVSFFENVHRALYSILEFRKEHQLMIKLIQEERDMGTKEVQEVMQQV 127 Query: 121 EEYALDFLRYQIEQAMERGEVKPCDASVAAFMIFRLYLALTTEWNKEHEPLDKNRIKEHM 180 + + ++ ++ A+++GE+ CD + AF++ RLY++L +W K HEPL+K +I E Sbjct: 128 DVEIVSVIQSYLKIAIDKGEISKCDPEITAFIMLRLYVSLIFDWEKNHEPLEKEKIAELF 187 Query: 181 ILFISNGI 188 L++ G+ Sbjct: 188 ELYLLKGL 195 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.322 0.136 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 209,478,719 Number of extensions: 6584091 Number of successful extensions: 20246 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 20280 Number of HSP's successfully gapped: 11 Length of query: 190 Length of database: 757,237,578 Length adjustment: 119 Effective length of query: 71 Effective length of database: 434,140,797 Effective search space: 30823996587 Effective search space used: 30823996587 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 122 (51.6 bits)