BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0229.0009.p
         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF 
           2,715,099 sequences; 757,237,578 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_350083.1| Hypothetical protein [Clostridium acetobutylicu...   170   9e-42
ref|NP_811866.1| conserved hypothetical protein [Bacteroides the...    73   2e-12

>ref|NP_350083.1| Hypothetical protein [Clostridium acetobutylicum]
 pir||D97329 hypothetical protein CAC3497 [imported] - Clostridium
           acetobutylicum
 gb|AAK81423.1| Hypothetical protein [Clostridium acetobutylicum]
          Length = 137

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 78/136 (57%), Positives = 104/136 (76%)

Query: 1   MKVDIYAYDGIGIQCVYKNDEWLVCIKNWKPDNDIDGIHRLEVHLETDEQFILVNGKAIL 60
           MK DIY  +  GI CVYKN++WLVCIKNWKPDNDI+GI  LE+H  TDEQFIL  GKAIL
Sbjct: 1   MKPDIYENNREGILCVYKNEKWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAIL 60

Query: 61  LVADRKKDQFDIDLIEMEIGKVYNVPKNTWFYTIVQKDTKLAYVQHANTTEENSSYCEMS 120
           + A+++ D+F+I+L  ME GKVYNVP   WFY+I QKDTK+ YVQ +N + +NS +C++S
Sbjct: 61  ITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQDSNCSMDNSDFCDLS 120

Query: 121 ESELAGVKERARKILK 136
           + E+  ++  ARK+ +
Sbjct: 121 KEEIEYIQTNARKLFE 136


>ref|NP_811866.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
 gb|AAO78060.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 141

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 72/135 (53%)

Query: 3   VDIYAYDGIGIQCVYKNDEWLVCIKNWKPDNDIDGIHRLEVHLETDEQFILVNGKAILLV 62
           +D + ++G G       D W V   N+     ++ I +L++H +TDE FIL+ GKA L+ 
Sbjct: 4   IDEHTFEGKGYHPFLITDRWQVAYLNYAEAESLEQIEKLDIHHQTDEVFILLQGKAALIG 63

Query: 63  ADRKKDQFDIDLIEMEIGKVYNVPKNTWFYTIVQKDTKLAYVQHANTTEENSSYCEMSES 122
           A         D++ M+ G VYN+ +  W    +Q  +++  +++ +T   +  + E++ES
Sbjct: 64  ASVTDQNITYDVVNMQPGIVYNIRREVWHKIAMQPGSQVLIIENNDTHLNDFEFFELTES 123

Query: 123 ELAGVKERARKILKL 137
           + + ++E   KI+ L
Sbjct: 124 QKSQLRECVTKIVSL 138


  Database: All non-redundant GenBank CDS
  translations+PDB+SwissProt+PIR+PRF
    Posted date:  Mar 24, 2004  1:53 AM
  Number of letters in database: 757,237,578
  Number of sequences in database:  2,715,099
  
Lambda     K      H
   0.318    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 2715099
Number of Hits to DB: 209,550,950
Number of extensions: 8352736
Number of successful extensions: 20298
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 20298
Number of HSP's successfully gapped: 2
Length of query: 137
Length of database: 757,237,578
Length adjustment: 99
Effective length of query: 38
Effective length of database: 488,442,777
Effective search space: 18560825526
Effective search space used: 18560825526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 120 (50.8 bits)