BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0011.p (154 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692363.1| hypothetical protein OB1442 [Oceanobacillus ihe... 171 7e-42 ref|NP_371641.1| conserved hypothetical protein [Staphylococcus ... 155 2e-37 ref|NP_764371.1| conserved hypothetical protein [Staphylococcus ... 155 3e-37 gb|EAE17415.1| unknown [environmental sequence] 74 1e-12 gb|EAD15518.1| unknown [environmental sequence] 67 9e-11 >ref|NP_692363.1| hypothetical protein OB1442 [Oceanobacillus iheyensis HTE831] dbj|BAC13398.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 151 Score = 171 bits (432), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 85/146 (58%), Positives = 106/146 (72%) Query: 8 PTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNTSW 67 PTIST FI++SAVLVAIGW LI+KGK AHKK M ++FFI+Y+SRTVF+GNTS+ Sbjct: 5 PTISTFFIIVSAVLVAIGWILIVKGKASAHKKVMLAAAISALIFFIIYVSRTVFIGNTSF 64 Query: 68 GGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITAIT 127 GGP+++ + IFL+FHI+LAT AVFGI TL L K KH+K G VTS+IWF TAIT Sbjct: 65 GGPDEVKTYFTIFLVFHIILATTGAVFGIVTLILALKRNIKKHQKIGPVTSIIWFFTAIT 124 Query: 128 GVAVYVLLYIFYPGGHTKPVWEVILG 153 GV VY+ LY+ Y G T + + I G Sbjct: 125 GVMVYIFLYVMYDPGQTTSMIKAIFG 150 >ref|NP_371641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] ref|NP_374235.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] ref|NP_645817.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] pir||B89882 conserved hypothetical protein SA0966 [imported] - Staphylococcus aureus (strain N315) dbj|BAB42214.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus N315] dbj|BAB57279.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] dbj|BAB94865.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MW2] Length = 153 Score = 155 bits (393), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/148 (52%), Positives = 99/148 (66%) Query: 6 VFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNT 65 + PTIST+ IVISA+L+AIGWRLI K + HK M + FF++Y SRT+F+GNT Sbjct: 5 ILPTISTTCIVISAILIAIGWRLIWKREINKHKNVMLAAAVFALTFFLIYASRTIFIGNT 64 Query: 66 SWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITA 125 ++GGP + Y IFL FHI LAT+ + G+ + FK KY HRK+G SVIWF TA Sbjct: 65 AFGGPASIKKYYTIFLFFHINLATIGGILGLVQIITAFKDKYNVHRKFGPFASVIWFCTA 124 Query: 126 ITGVAVYVLLYIFYPGGHTKPVWEVILG 153 ITGVAVY+LLY+ YPGG T + + G Sbjct: 125 ITGVAVYLLLYVLYPGGETTSLIKATFG 152 >ref|NP_764371.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] gb|AAO04413.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC 12228] Length = 153 Score = 155 bits (391), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 81/148 (54%), Positives = 101/148 (68%) Query: 6 VFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVFVGNT 65 + PTISTS IVISA+LVAIGW LI K + HK M + FFI+Y +RT+F+GNT Sbjct: 5 ILPTISTSCIVISAILVAIGWALIWKRQVHKHKNIMLWAAFFALTFFIIYAARTIFIGNT 64 Query: 66 SWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFITA 125 ++GGP + + Y IFL+FHI+LATV V G+ + L FK K HRK G S+IWF TA Sbjct: 65 AFGGPSSIKVYYTIFLVFHIILATVGGVLGLIQIILAFKDKLHIHRKIGPWASIIWFFTA 124 Query: 126 ITGVAVYVLLYIFYPGGHTKPVWEVILG 153 ITGVAVYVLLY+ YPGG T + + LG Sbjct: 125 ITGVAVYVLLYVLYPGGETTSLLKATLG 152 >gb|EAE17415.1| unknown [environmental sequence] Length = 172 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 3/133 (2%) Query: 5 TVFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVF-VG 63 ++ PT++ S + +L+ +G+ LIIK KR HK TM F + Y+ F G Sbjct: 42 SLLPTVNASLNAFTTLLLIVGYFLIIKRKRSLHKNTMLVAFGTSGAFLVSYIIYHWFKAG 101 Query: 64 NTSWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFI 123 S+ G D +LLY+ LI HI+LA + + TL G+ HRK ++T +W Sbjct: 102 PKSYAG--DFALLYYFILISHIILAALIIPLALLTLYRGWTDNLKLHRKIAKITLPLWLY 159 Query: 124 TAITGVAVYVLLY 136 ++TGV +Y++LY Sbjct: 160 VSVTGVVIYIMLY 172 >gb|EAD15518.1| unknown [environmental sequence] Length = 179 Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 3/133 (2%) Query: 5 TVFPTISTSFIVISAVLVAIGWRLIIKGKREAHKKTMXXXXXXXVLFFIVYMSRTVF-VG 63 + P ++ S ++ VL+ IG+ LI + E HK TM LF + Y+ F G Sbjct: 49 SALPLVNASLNGVTTVLLIIGFLLIRARRVELHKNTMLAAFGTSTLFLVSYVVYHWFKAG 108 Query: 64 NTSWGGPEDLSLLYHIFLIFHIVLATVAAVFGITTLTLGFKAKYAKHRKWGRVTSVIWFI 123 ++ G D Y+ LI HIVLA + TL G++ + AKHR +VT IW Sbjct: 109 PKAYTG--DFREFYYFILISHIVLAAAIIPLALVTLYRGWQKQIAKHRTIAKVTLPIWLY 166 Query: 124 TAITGVAVYVLLY 136 ++TGV +Y +LY Sbjct: 167 VSVTGVVIYAMLY 179 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.332 0.144 0.459 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 209,993,735 Number of extensions: 7074000 Number of successful extensions: 20940 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 20918 Number of HSP's successfully gapped: 52 Length of query: 154 Length of database: 757,237,578 Length adjustment: 112 Effective length of query: 42 Effective length of database: 453,146,490 Effective search space: 19032152580 Effective search space used: 19032152580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 120 (50.8 bits)