BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0225.0001.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_692059.1| ABC transporter ATP-binding protein [Oceanobaci... 194 2e-48 ref|NP_388870.1| similar to ABC transporter (ATP-binding protein... 186 4e-46 ref|NP_242032.1| ABC transporter (ATP-binding protein) [Bacillus... 185 7e-46 gb|AAC62423.1| NatA [Bacillus firmus] 184 1e-45 ref|NP_375454.1| hypothetical protein, similar to ABC transporte... 172 8e-42 >ref|NP_692059.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] dbj|BAC13094.1| ABC transporter ATP-binding protein [Oceanobacillus iheyensis HTE831] Length = 299 Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/196 (50%), Positives = 127/196 (64%), Gaps = 19/196 (9%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 ALKL V K++ TAVN +SL++ E++G LG NGAGKTTT RM+LGL+ G I + Sbjct: 2 ALKLNNVTKRFDTHTAVNNLSLEIPEKEMFGFLGGNGAGKTTTFRMILGLLDITEGDITW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 G+ S E H++GYLPEERGLYPK+ V +QIIYL +LRGM E+ L WLERF VP Sbjct: 62 KGESISYEKSHLIGYLPEERGLYPKLTVREQIIYLGKLRGMKKNQIEEELIKWLERFRVP 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADD--------------- 167 EY NKK+EELSKGNQQK+ FI+AV+H+PQ+LIL D P + D Sbjct: 122 EYLNKKVEELSKGNQQKIQFISAVIHRPQLLIL----DEPFSGLDPVNVEMLKEAVIELR 177 Query: 168 DGGAPVLAPGQRVQHL 183 D G ++ R++H+ Sbjct: 178 DKGTSIVFSSHRMEHV 193 >ref|NP_388870.1| similar to ABC transporter (ATP-binding protein) [Bacillus subtilis] pir||C69819 ABC transporter (ATP-binding protein) homolog yhaQ - Bacillus subtilis emb|CAA74424.1| Hypothetical protein [Bacillus subtilis] emb|CAB12829.1| yhaQ [Bacillus subtilis subsp. subtilis str. 168] Length = 298 Score = 186 bits (472), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 130/195 (66%), Gaps = 19/195 (9%) Query: 4 LKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILYN 63 L ++ V K +GD AV+G+ L + +++GLLGANGAGKTTT RM+LGL+ G I + Sbjct: 2 LTIDHVTKTFGDYKAVDGLDLDIPEQQMFGLLGANGAGKTTTFRMILGLLSITEGSISWK 61 Query: 64 GKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVPE 123 G+P + + + +GYLPEERGLYPK+KV DQ++YLARL+GM +A K L WLERF++ + Sbjct: 62 GRPVNYHISNKIGYLPEERGLYPKMKVRDQLVYLARLKGMEKREAVKELGTWLERFNITD 121 Query: 124 YYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADD---------------D 168 Y NKK+EEL+KGNQQK+ FI+AV+HKP++LIL D P + D + Sbjct: 122 YENKKVEELAKGNQQKIQFISAVLHKPELLIL----DEPFSGLDPVNVELLKEAVISLKN 177 Query: 169 GGAPVLAPGQRVQHL 183 G +L R++H+ Sbjct: 178 SGVSILFSSHRMEHV 192 >ref|NP_242032.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] pir||F83795 ABC transporter (ATP-binding protein) natA [imported] - Bacillus halodurans (strain C-125) dbj|BAB04885.1| ABC transporter (ATP-binding protein) [Bacillus halodurans] Length = 299 Score = 185 bits (470), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 86/165 (52%), Positives = 121/165 (73%), Gaps = 4/165 (2%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 +L ++ V K++G TAVN + + V GE++G+LGANGAGKTTT RM+LGL+ P G I + Sbjct: 2 SLTIDGVTKKFGTFTAVNNLHVSVPKGEMFGMLGANGAGKTTTFRMILGLLEPTEGTIHW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 +P + + +GYLPEERGLYPK+ V DQ+ YL RL+GM D +K ++ WLERF+VP Sbjct: 62 REQPLTYNQTNCIGYLPEERGLYPKLTVKDQLKYLGRLKGMKTQDIQKEMKMWLERFEVP 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADD 167 EY +K++E+LSKGNQQK+ FIA+V+H+P++LIL D P + D Sbjct: 122 EYEHKRVEQLSKGNQQKIQFIASVLHRPELLIL----DEPFSGLD 162 >gb|AAC62423.1| NatA [Bacillus firmus] Length = 299 Score = 184 bits (467), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 88/172 (51%), Positives = 122/172 (70%), Gaps = 4/172 (2%) Query: 3 ALKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILY 62 LK+ + K++G AV+ +SL++ GE++G+LGANGAGKTTT RM+LGL+ P G++ + Sbjct: 2 TLKINNITKRFGQSVAVDQLSLEIPSGEMFGMLGANGAGKTTTFRMMLGLLEPTEGEMTW 61 Query: 63 NGKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVP 122 G+ +++GYLPEERGLYPK+KV DQ+IYL RL+GM D +R WLERF V Sbjct: 62 KGEKIDYSRTNVIGYLPEERGLYPKLKVRDQLIYLGRLKGMHKKDIIPEMRMWLERFKVT 121 Query: 123 EYYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVDRPVAADDDGGAPVL 174 +Y K+IEELSKGNQQK+ FIA+V+H+P++LIL D P + D A +L Sbjct: 122 DYETKRIEELSKGNQQKIQFIASVIHRPELLIL----DEPFSGLDPVNAELL 169 >ref|NP_375454.1| hypothetical protein, similar to ABC transporter (ATP-binding protein) [Staphylococcus aureus subsp. aureus N315] ref|NP_647078.1| (ATP-binding protein)~ORFID:MW2261~hypothetical protein, similar to ABC transporter [Staphylococcus aureus subsp. aureus MW2] pir||H90033 hypothetical protein SA2132 [imported] - Staphylococcus aureus (strain N315) dbj|BAB43433.1| SA2132 [Staphylococcus aureus subsp. aureus N315] dbj|BAB96126.1| MW2261 [Staphylococcus aureus subsp. aureus MW2] Length = 299 Score = 172 bits (435), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 85/191 (44%), Positives = 125/191 (65%), Gaps = 11/191 (5%) Query: 4 LKLEQVMKQYGDKTAVNGISLKVEPGEIYGLLGANGAGKTTTMRMVLGLIYPDGGKILYN 63 L +E V K++G TAVN ISL++E G++ G LG NGAGKTTT RM+LGL P G I YN Sbjct: 3 LVIEHVTKRFGKMTAVNDISLELESGKMLGFLGRNGAGKTTTFRMILGLSEPTEGHITYN 62 Query: 64 GKPFSDELQHMMGYLPEERGLYPKVKVSDQIIYLARLRGMSAGDAEKSLRFWLERFDVPE 123 GK + + +GYLPEERGL+ K+ V +++ YLA L+GMS + ++ + +WLERFD+ E Sbjct: 63 GKKLDKTMYNRIGYLPEERGLHGKLTVEEELKYLATLKGMSKTEIQQQISYWLERFDITE 122 Query: 124 YYNKKIEELSKGNQQKMGFIAAVVHKPQILILQHAVD--RPVAAD---------DDGGAP 172 K+I+ LSKGNQQK+ +A+++HKP++LIL PV + +D G+ Sbjct: 123 NRKKRIDSLSKGNQQKIQLLASMLHKPELLILDEPFSGLDPVNVELLKEAVKDLNDWGST 182 Query: 173 VLAPGQRVQHL 183 ++ R++H+ Sbjct: 183 IVYSSHRMEHV 193 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.319 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 351,577,520 Number of extensions: 14972535 Number of successful extensions: 78094 Number of sequences better than 1.0e-05: 11493 Number of HSP's gapped: 73869 Number of HSP's successfully gapped: 11774 Length of query: 241 Length of database: 757,237,578 Length adjustment: 122 Effective length of query: 119 Effective length of database: 425,995,500 Effective search space: 50693464500 Effective search space used: 50693464500 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)