BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0220.0004.p (319 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_815883.1| ABC transporter, permease protein [Enterococcus... 184 3e-45 ref|NP_267652.1| sugar ABC transporter permease protein [Lactoco... 182 1e-44 ref|NP_357676.1| ABC transporter membrane spanning permease - su... 171 2e-41 ref|NP_344638.1| ABC transporter, permease protein [Streptococcu... 171 3e-41 ref|NP_241661.1| sugar transport system (permease) (binding prot... 170 4e-41 >ref|NP_815883.1| ABC transporter, permease protein [Enterococcus faecalis V583] gb|AAO81953.1| ABC transporter, permease protein [Enterococcus faecalis V583] Length = 307 Score = 184 bits (466), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 99/245 (40%), Positives = 148/245 (60%), Gaps = 6/245 (2%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLF-GSKAQQ 69 + F IAIF+ C+VPF + SL++E +AA GY FWP+ F+ E Y ++F G+ +Q+ Sbjct: 20 LIFNIVIAIFAISCVVPFFFVIMISLTSEGSLAANGYRFWPKEFSLEAYRYIFQGAMSQR 79 Query: 70 ILRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYL 129 I+ A ++V +TV GT+ +T+ YAYVIS +F K TMLFS G + YL Sbjct: 80 IIHALGVTVFITVTGTIVNATMTSLYAYVISRSNFPFKKFFTLFALITMLFSPGMVANYL 139 Query: 130 LSTKYYHLGDTLIGLFIPYVLSVFLMFLMANYFR-SIPHEIVESAQIDGAGHLRIFFSIM 188 + T L DT+ L +P L F + +M +F+ ++P I+ESA+IDGA +RIF SI+ Sbjct: 140 VMTNLLQLKDTIWALILPLALGPFNILVMRTFFKKTVPDSIIESARIDGASEMRIFVSIV 199 Query: 189 IPLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLAS----GN 244 +PL G+ TISLF AL +WND++ L+ + L +QYL+ + N++FL+ G Sbjct: 200 LPLAVPGIATISLFAALGYWNDWFNALLYIQKDTLVPLQYLLMKIQNNLEFLSRSTDMGA 259 Query: 245 AAQVG 249 AAQ G Sbjct: 260 AAQEG 264 >ref|NP_267652.1| sugar ABC transporter permease protein [Lactococcus lactis subsp. lactis] pir||H86811 sugar ABC transporter permease protein ypcH [imported] - Lactococcus lactis subsp. lactis (strain IL1403) gb|AAK05594.1| sugar ABC transporter permease protein [Lactococcus lactis subsp. lactis] Length = 306 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 150/248 (60%), Gaps = 3/248 (1%) Query: 6 NKGLLIFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGS 65 N+ + F IA+F+ C++PF+ ++ SL+ ES + GYSFWPR ++F Y FLF Sbjct: 15 NRPVNFVFNIVIALFAISCVLPFLFVLAISLTKESALQQFGYSFWPREWSFYAYTFLFDQ 74 Query: 66 KAQQILRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTL 125 ++L++ ++V+VTVLGT T+ YAY IS +F + TMLFS G + Sbjct: 75 MKDKMLQSLFVTVLVTVLGTAINSTATSLYAYAISRNNFPFRRFFTIFCLITMLFSPGMI 134 Query: 126 PWYLLSTKYYHLGDTLIGLFIPYVLSVFLMFLMANYF-RSIPHEIVESAQIDGAGHLRIF 184 YL+ T L DT+ L +P +S F + +M +F RS+P I+ESA+IDGA LRIF Sbjct: 135 ANYLVMTNLLQLKDTIWALILPMAVSPFNIIVMRTFFKRSVPDSIIESARIDGASELRIF 194 Query: 185 FSIMIPLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLA--S 242 I++PL G+ TISLF AL +WND++ L+ +++ KL +QYL+ + N+QFL + Sbjct: 195 TQIVLPLAVPGIATISLFAALGYWNDWFNALLYISNDKLIPLQYLLMKVQNNLQFLTQNA 254 Query: 243 GNAAQVGG 250 G +Q+ G Sbjct: 255 GAGSQIAG 262 >ref|NP_357676.1| ABC transporter membrane spanning permease - sugar transport [Streptococcus pneumoniae R6] pir||B97882 hypothetical protein ABC-MSP [imported] - Streptococcus pneumoniae (strain R6) gb|AAK98886.1| ABC transporter membrane spanning permease - sugar transport [Streptococcus pneumoniae R6] Length = 307 Score = 171 bits (434), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQI 70 IFF + + C++PF+ + S++ E + GYSF+P F + +EFL K +I Sbjct: 25 IFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFK-DKI 83 Query: 71 LRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLL 130 L+A +SV VTV+GT++ V +TT YAY IS +F+ + +MLF+ G +P Y++ Sbjct: 84 LQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIM 143 Query: 131 STKYYHLGDTLIGLFIPYVLSVFLMFLMANYFR-SIPHEIVESAQIDGAGHLRIFFSIMI 189 T+ LGDT+ L +P +LS F + LM ++F+ +IP I+ESA+IDGA RIFF I + Sbjct: 144 VTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICL 203 Query: 190 PLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLAS--GNAAQ 247 PL G+ TI+L AL FWND++ L+ + LY +QYL+ + N+ ++A G Q Sbjct: 204 PLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLTGQ 263 Query: 248 VG 249 +G Sbjct: 264 LG 265 >ref|NP_344638.1| ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] pir||E95010 ABC transporter, permease protein SP0091 [imported] - Streptococcus pneumoniae (strain TIGR4) gb|AAK74278.1| ABC transporter, permease protein [Streptococcus pneumoniae TIGR4] Length = 307 Score = 171 bits (432), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 94/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQI 70 IFF + + C++PF+ + S++ E + GYSF+P F + +EFL K +I Sbjct: 25 IFFSIISGLIALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGLDGFEFLAQFK-DKI 83 Query: 71 LRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLL 130 L+A +SV VTV+GT++ V +TT YAY IS +F+ + +MLF+ G +P Y++ Sbjct: 84 LQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLSMLFNAGLVPGYIM 143 Query: 131 STKYYHLGDTLIGLFIPYVLSVFLMFLMANYFR-SIPHEIVESAQIDGAGHLRIFFSIMI 189 T+ LGDT+ L +P +LS F + LM ++F+ +IP I+ESA+IDGA RIFF I + Sbjct: 144 VTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARIDGASEARIFFQICL 203 Query: 190 PLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLAS--GNAAQ 247 PL G+ TI+L AL FWND++ L+ + LY +QYL+ + N+ ++A G Q Sbjct: 204 PLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQNMDYIAKAVGLIGQ 263 Query: 248 VG 249 +G Sbjct: 264 LG 265 >ref|NP_241661.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] pir||C83749 sugar transport system (permease) (binding protein dependent transporter) BH0795 [imported] - Bacillus halodurans (strain C-125) dbj|BAB04514.1| sugar transport system (permease) (binding protein dependent transporter) [Bacillus halodurans] Length = 322 Score = 170 bits (430), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 92/271 (33%), Positives = 155/271 (57%), Gaps = 18/271 (6%) Query: 11 IFFYCCIAIFSAICLVPFILAVSGSLSTESRIAAEGYSFWPRGFTFETYEFLFGSKAQQI 70 IF + I F+ +C+ PFI + SL++E +A GY P ++F+ Y +L+ +++ + Sbjct: 37 IFMHTLIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSE-V 95 Query: 71 LRAYSMSVIVTVLGTVSAVLVTTAYAYVISVKSFRLKNXXXXXXXXTMLFSGGTLPWYLL 130 RAY +++ +TV+GT+ +V + YAY IS K F + TMLFSGG +P+Y++ Sbjct: 96 FRAYGVTIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIV 155 Query: 131 STKYYHLGDTLIGLFIPYVLSVFLMFLMANYF-RSIPHEIVESAQIDGAGHLRIFFSIMI 189 T++ L +++ L +P ++ F + +M +F RS+P I+ESA+IDGAG RIFF I++ Sbjct: 156 MTQFLGLKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVL 215 Query: 190 PLGRVGLVTISLFYALQFWNDFYLPLMLVTDQKLYTIQYLMYNMMANIQFLASGNAAQVG 249 PL G+ TI+LF L +WND++ L+ + D KL +Q L+ + N+ F+ Sbjct: 216 PLSIPGIATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFI--------- 266 Query: 250 GXXXXRTAAGDSQNG---DDLPDRAANRHII 277 + A SQN D +P +A ++ Sbjct: 267 ----RQNAMLSSQNSALLDSIPQDSARMAMV 293 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.330 0.142 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 422,174,553 Number of extensions: 15604899 Number of successful extensions: 48124 Number of sequences better than 1.0e-05: 1002 Number of HSP's gapped: 47795 Number of HSP's successfully gapped: 1002 Length of query: 319 Length of database: 757,237,578 Length adjustment: 125 Effective length of query: 194 Effective length of database: 417,850,203 Effective search space: 81062939382 Effective search space used: 81062939382 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 126 (53.1 bits)