BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0023.p (365 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_623526.1| predicted dehydrogenases and related proteins [... 514 e-144 ref|NP_471598.1| similar to oxidoreductase [Listeria innocua] >g... 511 e-143 ref|NP_465687.1| similar to oxidoreductase [Listeria monocytogen... 506 e-142 gb|AAC23913.1| NADH-dependent dehydrogenase homolog [Listeria mo... 500 e-140 ref|NP_694393.1| NADH-dependent dehydrogenase [Oceanobacillus ih... 484 e-135 >ref|NP_623526.1| predicted dehydrogenases and related proteins [Thermoanaerobacter tengcongensis] gb|AAM25130.1| predicted dehydrogenases and related proteins [Thermoanaerobacter tengcongensis] Length = 362 Score = 514 bits (1323), Expect = e-144, Method: Compositional matrix adjust. Identities = 234/342 (68%), Positives = 286/342 (83%) Query: 19 KHMPSLSRQNNAEMVAFCDIIEERAQEAAKTYGTEDAAVYTDFREMLAAGGFDIVHVCTP 78 KHMPSL++ +N EMVAFCDIIEERA++AAK YGT+DA VYTD+R++L D+VHVCTP Sbjct: 20 KHMPSLAKLDNVEMVAFCDIIEERARKAAKEYGTDDAKVYTDYRKLLEDKTIDVVHVCTP 79 Query: 79 NDSHSVISIAALEAGNHVMCEKPMAKTTAQAQEMLEAARRTGKKLSIAYQNRYRSDSEYL 138 N SH+ I++ AL AG HVMCEKPMAKT A++M+EA ++TGKKL+I YQNR+R DS+YL Sbjct: 80 NKSHAGITVDALYAGKHVMCEKPMAKTAEGARKMVEAYKKTGKKLTIGYQNRFRPDSQYL 139 Query: 139 KGLCESGELGDIYYGKAIALRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWLMDNY 198 +C++GELG++Y+ KA A+RRRAVPTWGVFLDEE+QGGGPLIDIGTH+LDLTLW+M+NY Sbjct: 140 HKICQNGELGEVYFAKAYAVRRRAVPTWGVFLDEEEQGGGPLIDIGTHSLDLTLWMMNNY 199 Query: 199 KPRMVVGSTFHKLGQKKNAANAFGPWDPEQFKVEDSAFGFITMENGATISLESSWALNVS 258 KPRMVVG+ +HKLG+ NAANA+GPWDPE+F VEDSAFGFI MENGATI LESSWALN Sbjct: 200 KPRMVVGTVYHKLGKMANAANAWGPWDPEKFTVEDSAFGFIVMENGATIILESSWALNTL 259 Query: 259 EFREAQTLLAGTEGGADMKDGLRLNGERAGRLYETKVDLSSGGVAFYSGGAESXXXXEAR 318 + EA T L GTEGGADM+DGLR+NGER GRLY TKV GGVA+Y G E EA+ Sbjct: 260 DVGEAMTTLCGTEGGADMRDGLRINGERFGRLYTTKVSFDIGGVAYYEGKGEDPGYLEAK 319 Query: 319 LWLEAVSEDKEPVVKPEQALVVTQILEAIYESARTGRAVYFD 360 W++A+ D+EPVVKPE+ALVV++ILEAIY SA+TG+ VYF+ Sbjct: 320 SWIDAIVNDREPVVKPEEALVVSEILEAIYTSAKTGKPVYFN 361 >ref|NP_471598.1| similar to oxidoreductase [Listeria innocua] pir||AF1715 oxidoreductase homolog lin2266 [imported] - Listeria innocua (strain Clip11262) emb|CAC97494.1| lin2266 [Listeria innocua] Length = 358 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 235/342 (68%), Positives = 285/342 (83%) Query: 19 KHMPSLSRQNNAEMVAFCDIIEERAQEAAKTYGTEDAAVYTDFREMLAAGGFDIVHVCTP 78 KHMPSL + AEMVAFCDI+ E+A+ AAK +G+E+A+VYT++ E+L D++HVCTP Sbjct: 17 KHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGSENASVYTNYVELLQDKSIDVIHVCTP 76 Query: 79 NDSHSVISIAALEAGNHVMCEKPMAKTTAQAQEMLEAARRTGKKLSIAYQNRYRSDSEYL 138 N SH+ ISIAA+EAG HVMCEKPMAKTTA+A+ M+EAA RTGKKL+I YQNR+R DS+YL Sbjct: 77 NISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEAANRTGKKLTIGYQNRFRKDSDYL 136 Query: 139 KGLCESGELGDIYYGKAIALRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWLMDNY 198 +CE+GELGDIYY KA A+RRRAVPTWGVFLDEE QGGGPLIDIGTHALDLTLW+MDNY Sbjct: 137 HQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNY 196 Query: 199 KPRMVVGSTFHKLGQKKNAANAFGPWDPEQFKVEDSAFGFITMENGATISLESSWALNVS 258 KP+ VVG+++HKL +K+NAANA+G WDP +F VEDSAFGFITMENGATI LE+SWALN Sbjct: 197 KPKYVVGNSYHKLAKKENAANAWGSWDPSKFTVEDSAFGFITMENGATIVLEASWALNTL 256 Query: 259 EFREAQTLLAGTEGGADMKDGLRLNGERAGRLYETKVDLSSGGVAFYSGGAESXXXXEAR 318 + EA+T L+GTEGGADM+DGLR+NGE ++YE K+ L +GGV FY G + EA Sbjct: 257 DVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAE 316 Query: 319 LWLEAVSEDKEPVVKPEQALVVTQILEAIYESARTGRAVYFD 360 WLEA+ D +PVVKPEQALVVTQILEAIYES++TG+ VYF+ Sbjct: 317 QWLEAILNDTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 >ref|NP_465687.1| similar to oxidoreductase [Listeria monocytogenes EGD-e] pir||AC1345 oxidoreductase homolog lmo2163 [imported] - Listeria monocytogenes (strain EGD-e) emb|CAD00241.1| lmo2163 [Listeria monocytogenes] Length = 358 Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust. Identities = 232/342 (67%), Positives = 284/342 (83%) Query: 19 KHMPSLSRQNNAEMVAFCDIIEERAQEAAKTYGTEDAAVYTDFREMLAAGGFDIVHVCTP 78 KHMPSL + AEMVAFCDI+ E+A+ AAK +G+E+A+VYT++ E+L D++HVCTP Sbjct: 17 KHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGSENASVYTNYVELLQDKSIDVIHVCTP 76 Query: 79 NDSHSVISIAALEAGNHVMCEKPMAKTTAQAQEMLEAARRTGKKLSIAYQNRYRSDSEYL 138 N SH+ ISIAA+EAG HVMCEKPMAKTT +A+ M+EAA RTGKKL+I YQNR+R DS+YL Sbjct: 77 NISHAEISIAAMEAGKHVMCEKPMAKTTEEAKSMIEAAERTGKKLTIGYQNRFRKDSDYL 136 Query: 139 KGLCESGELGDIYYGKAIALRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWLMDNY 198 +CE+GELGDIYY KA A+RRRAVPTWGVFLDEE QGGGPLIDIGTHALDLTLW+MDNY Sbjct: 137 HQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNY 196 Query: 199 KPRMVVGSTFHKLGQKKNAANAFGPWDPEQFKVEDSAFGFITMENGATISLESSWALNVS 258 KP+ VVG+++HKL +K+NAANA+G WDP +F VEDSAFGFITMENGATI LE+SW LN Sbjct: 197 KPKYVVGNSYHKLAKKENAANAWGSWDPNKFTVEDSAFGFITMENGATIVLEASWTLNTL 256 Query: 259 EFREAQTLLAGTEGGADMKDGLRLNGERAGRLYETKVDLSSGGVAFYSGGAESXXXXEAR 318 + EA+T L+GTEGGADM+DGLR+NGE ++YE K+ L +GGV FY G + EA Sbjct: 257 DVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAE 316 Query: 319 LWLEAVSEDKEPVVKPEQALVVTQILEAIYESARTGRAVYFD 360 WLEA+ ++ +PVVKPEQALVVTQILEAIYES++TG+ VYF+ Sbjct: 317 QWLEAIEKNTDPVVKPEQALVVTQILEAIYESSKTGQPVYFN 358 >gb|AAC23913.1| NADH-dependent dehydrogenase homolog [Listeria monocytogenes] Length = 358 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 231/342 (67%), Positives = 283/342 (82%) Query: 19 KHMPSLSRQNNAEMVAFCDIIEERAQEAAKTYGTEDAAVYTDFREMLAAGGFDIVHVCTP 78 KHMPSL + AEMVAFCDI+ E+A+ AAK +G E+A+VYT++ E+L D++HVCTP Sbjct: 17 KHMPSLLKAEKAEMVAFCDIVLEKAEAAAKEFGGENASVYTNYVELLQDKSIDVIHVCTP 76 Query: 79 NDSHSVISIAALEAGNHVMCEKPMAKTTAQAQEMLEAARRTGKKLSIAYQNRYRSDSEYL 138 N SH+ ISIAA+EAG HVMCEKPMAKTTA+A+ M+EAA RTGKKL+I YQNR+R DS+YL Sbjct: 77 NISHAEISIAAMEAGKHVMCEKPMAKTTAEAKSMIEAAERTGKKLTIGYQNRFRKDSDYL 136 Query: 139 KGLCESGELGDIYYGKAIALRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWLMDNY 198 +CE+GELGDIYY KA A+RRRAVPTWGVFLDEE QGGGPLIDIGTHALDLTLW+MDNY Sbjct: 137 HQVCENGELGDIYYAKAKAIRRRAVPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNY 196 Query: 199 KPRMVVGSTFHKLGQKKNAANAFGPWDPEQFKVEDSAFGFITMENGATISLESSWALNVS 258 KP+ VVG+++HKL +K+NAANA+G WDP +F VEDSAFGFITMENGATI LE+SWALN Sbjct: 197 KPKYVVGNSYHKLAKKENAANAWGSWDPNKFTVEDSAFGFITMENGATIVLEASWALNTL 256 Query: 259 EFREAQTLLAGTEGGADMKDGLRLNGERAGRLYETKVDLSSGGVAFYSGGAESXXXXEAR 318 + EA+T L+GTEGGADM+DGLR+NGE ++YE K+ L +GGV FY G + EA Sbjct: 257 DVGEARTSLSGTEGGADMEDGLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAG 316 Query: 319 LWLEAVSEDKEPVVKPEQALVVTQILEAIYESARTGRAVYFD 360 WL A+ ++ +PVVKP QA+VVTQILEAIYES++TG+ VYF+ Sbjct: 317 QWLGAIEKNTDPVVKPGQAIVVTQILEAIYESSKTGQPVYFN 358 >ref|NP_694393.1| NADH-dependent dehydrogenase [Oceanobacillus iheyensis HTE831] dbj|BAC15427.1| NADH-dependent dehydrogenase [Oceanobacillus iheyensis HTE831] Length = 360 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 221/342 (64%), Positives = 278/342 (81%) Query: 19 KHMPSLSRQNNAEMVAFCDIIEERAQEAAKTYGTEDAAVYTDFREMLAAGGFDIVHVCTP 78 KH+PSLS+ N+ ++VAFCDI E+A+ AAK YG EDA +Y D+ +++ ++VHVCTP Sbjct: 19 KHLPSLSKLNHVKIVAFCDIDREKAERAAKEYGGEDAVIYEDYSQLIEQSSVEVVHVCTP 78 Query: 79 NDSHSVISIAALEAGNHVMCEKPMAKTTAQAQEMLEAARRTGKKLSIAYQNRYRSDSEYL 138 N+SH+ ISIAAL G HVMCEKPMAKT +A+ M++AA + KKL+I Y NR+R+DS+YL Sbjct: 79 NNSHAEISIAALHGGKHVMCEKPMAKTAEEAKAMIDAAEKCNKKLTIGYNNRFRTDSQYL 138 Query: 139 KGLCESGELGDIYYGKAIALRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWLMDNY 198 K +C+ G+LG IY+ KA A+RRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLW+MDNY Sbjct: 139 KKVCQRGDLGHIYFAKAHAIRRRAVPTWGVFLDEEKQGGGPLIDIGTHALDLTLWMMDNY 198 Query: 199 KPRMVVGSTFHKLGQKKNAANAFGPWDPEQFKVEDSAFGFITMENGATISLESSWALNVS 258 +P+ V+G+T H LG+KK+AAN +G W+P +F VED+AFGFITM+NGATI LESSWALN Sbjct: 199 EPKSVMGTTHHLLGKKKDAANPWGTWNPNEFTVEDAAFGFITMKNGATIILESSWALNSL 258 Query: 259 EFREAQTLLAGTEGGADMKDGLRLNGERAGRLYETKVDLSSGGVAFYSGGAESXXXXEAR 318 + EA+ L+GTEGGADMKDGLRL+GE G LY +VDL GGVAFY G ES EAR Sbjct: 259 DVDEAKCSLSGTEGGADMKDGLRLHGEDLGELYTKQVDLGPGGVAFYDGNTESDAELEAR 318 Query: 319 LWLEAVSEDKEPVVKPEQALVVTQILEAIYESARTGRAVYFD 360 LW+E++ +KE V+P++ALVVTQILEAIY+SA+TG+AVYFD Sbjct: 319 LWIESIINEKEATVQPKEALVVTQILEAIYQSAKTGKAVYFD 360 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.315 0.131 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 505,344,179 Number of extensions: 20090542 Number of successful extensions: 44334 Number of sequences better than 1.0e-05: 1058 Number of HSP's gapped: 44002 Number of HSP's successfully gapped: 1058 Length of query: 365 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 238 Effective length of database: 412,420,005 Effective search space: 98155961190 Effective search space used: 98155961190 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)