BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0217.0018.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF 2,715,099 sequences; 757,237,578 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_389028.1| oligopeptide ABC transporter (ATP-binding prote... 531 e-150 gb|AAA62691.1| sporulation protein 531 e-149 emb|CAA39790.1| OppD [Bacillus subtilis] 521 e-147 ref|NP_471629.1| similar to oligopeptide ABC transporter (ATP-bi... 454 e-126 ref|NP_977624.1| oligopeptide ABC transporter, ATP-binding prote... 442 e-123 >ref|NP_389028.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis] sp|P24136|OPPD_BACSU Oligopeptide transport ATP-binding protein oppD pir||B69669 oligopeptide transport ATP-binding protein oppD - Bacillus subtilis emb|CAB13003.1| oligopeptide ABC transporter (ATP-binding protein) [Bacillus subtilis subsp. subtilis str. 168] Length = 358 Score = 531 bits (1368), Expect = e-150, Method: Compositional matrix adjust. Identities = 262/351 (74%), Positives = 293/351 (83%), Gaps = 3/351 (0%) Query: 3 RLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQPM 62 RLLEVKDLAISF+T GGEVQAIRGV+FH++KGETLAIVGESGSGKSVTSQA+MKL+P P Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65 Query: 63 GEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKHE 122 G +KRG+ILFEG+DL+ +EK+MQ +RGKEIGMIFQDPMTSLNP MKVGKQITEVLFKHE Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHE 125 Query: 123 KISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADEP 182 KISK+AA KR +ELL LVGIP PE+R Q+PHEFSGGMRQRVVIAMALAANPKLLIADEP Sbjct: 126 KISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEP 185 Query: 183 TTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAEE 242 TTALDVTIQAQIL+LMKD+QKKIDT+IIFITHDLG GQIVE GT +E Sbjct: 186 TTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245 Query: 243 IFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDME 301 IFYDPRHPYTWGLLASMP+LES G LTAIPGTPPDL PPKGDAFALRS+YAM+ID E Sbjct: 246 IFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFE 305 Query: 302 KEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 +EPPM+KVSDTH KSWL+HP + R L+N + +PVLV Sbjct: 306 QEPPMFKVSDTH--YVKSWLLHPDAPKVEPPEAVKAKMRKLANTFEKPVLV 354 >gb|AAA62691.1| sporulation protein Length = 358 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 262/351 (74%), Positives = 293/351 (83%), Gaps = 3/351 (0%) Query: 3 RLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQPM 62 RLLEVKDLAISF+T GGEVQAIRGV+FH++KGETLAIVGESGSGKSVTSQA+MKL+P P Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65 Query: 63 GEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKHE 122 G +KRG+ILFEG+DL+ +EK+MQ +RGKEIGMIFQDPMTSLNP MKVGKQITEVLFKHE Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHE 125 Query: 123 KISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADEP 182 KISK+AA KR +ELL LVGIP PE+R Q+PHEFSGGMRQRVVIAMALAANPKLLIADEP Sbjct: 126 KISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEP 185 Query: 183 TTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAEE 242 TTALDVTIQAQIL+LMKD+QKKIDT+IIFITHDLG GQIVE GT +E Sbjct: 186 TTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245 Query: 243 IFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDME 301 IFYDPRHPYTWGLLASMP+LES G LTAIPGTPPDL PPKGDAFALRS+YAM+ID E Sbjct: 246 IFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFE 305 Query: 302 KEPPMYKVSDTHXXXXKSWLMHPLXXXXXXXXXXXXRHRVLSNAYAEPVLV 352 +EPPM+KVSDTH KSWL+HP + R L+N + +PVLV Sbjct: 306 QEPPMFKVSDTH--YVKSWLLHPDAPKVEPPEAVKAKMRKLANTFEKPVLV 354 >emb|CAA39790.1| OppD [Bacillus subtilis] Length = 336 Score = 521 bits (1343), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/323 (78%), Positives = 282/323 (87%), Gaps = 3/323 (0%) Query: 3 RLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQPM 62 RLLEVKDLAISF+T GGEVQAIRGV+FH++KGETLAIVGESGSGKSVTSQA+MKL+P P Sbjct: 6 RLLEVKDLAISFKTYGGEVQAIRGVNFHLDKGETLAIVGESGSGKSVTSQAIMKLIPMPP 65 Query: 63 GEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFKHE 122 G +KRG+ILFEG+DL+ +EK+MQ +RGKEIGMIFQDPMTSLNP MKVGKQITEVLFKHE Sbjct: 66 GYFKRGEILFEGKDLVPLSEKEMQNVRGKEIGMIFQDPMTSLNPTMKVGKQITEVLFKHE 125 Query: 123 KISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIADEP 182 KISK+AA KR +ELL LVGIP PE+R Q+PHEFSGGMRQRVVIAMALAANPKLLIADEP Sbjct: 126 KISKEAAKKRAVELLELVGIPMPEKRVNQFPHEFSGGMRQRVVIAMALAANPKLLIADEP 185 Query: 183 TTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTAEE 242 TTALDVTIQAQIL+LMKD+QKKIDT+IIFITHDLG GQIVE GT +E Sbjct: 186 TTALDVTIQAQILELMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYAGQIVETGTVDE 245 Query: 243 IFYDPRHPYTWGLLASMPSLESKG-SLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDME 301 IFYDPRHPYTWGLLASMP+LES G LTAIPGTPPDL PPKGDAFALRS+YAM+ID E Sbjct: 246 IFYDPRHPYTWGLLASMPTLESSGEEELTAIPGTPPDLTNPPKGDAFALRSSYAMKIDFE 305 Query: 302 KEPPMYKVSDTHXXXXKSWLMHP 324 +EPPM+KVSDTH KSWL+HP Sbjct: 306 QEPPMFKVSDTH--YVKSWLLHP 326 >ref|NP_471629.1| similar to oligopeptide ABC transporter (ATP-binding protein) [Listeria innocua] ref|NP_465717.1| similar to oligopeptide ABC transporter (ATP-binding protein) [Listeria monocytogenes EGD-e] pir||AE1719 oligopeptide ABC transporter (ATP-binding protein) homolog lin2297 [imported] - Listeria innocua (strain Clip11262) pir||AI1348 oligopeptide ABC transporter (ATP-binding protein) homolog lmo2193 [imported] - Listeria monocytogenes (strain EGD-e) gb|AAF73093.1| ATPase OppD [Listeria monocytogenes] emb|CAD00271.1| lmo2193 [Listeria monocytogenes] emb|CAC97525.1| lin2297 [Listeria innocua] Length = 358 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/324 (66%), Positives = 263/324 (81%), Gaps = 2/324 (0%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 ME+LLEVKDL ISF T GEV+AIRGV+F + KGETLAIVGESGSGKSVT++++M+L+P+ Sbjct: 1 MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESGSGKSVTTKSIMRLLPE 60 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 E K GQILF G D+ +EKQMQKIRGK+I MIFQDPMTSLNP M +GKQI+E L K Sbjct: 61 GNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMTSLNPTMTIGKQISEPLIK 120 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 H+KISK A+K + LL LVGI + E R +QYPH+FSGGMRQRVVIA++LA NP++LIAD Sbjct: 121 HQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGMRQRVVIAISLACNPQILIAD 180 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQILDLMKD+QKKIDT+IIFITHDLG G+IVE+GT Sbjct: 181 EPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGVVANVADRVAVMYGGKIVEIGTV 240 Query: 241 EEIFYDPRHPYTWGLLASMPSLESKGSLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDM 300 +EIFY+P+HPYTWGL++SMP+L++ L IPGTPPDL+ PPKGDAFA R+ YAMQID+ Sbjct: 241 DEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTPPDLLHPPKGDAFAARNKYAMQIDL 300 Query: 301 EKEPPMYKVSDTHXXXXKSWLMHP 324 E+EPP++KVSDTH +WL+HP Sbjct: 301 EEEPPLFKVSDTHYAA--TWLLHP 322 >ref|NP_977624.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] gb|AAG22037.1| OppD [Bacillus thuringiensis] gb|AAS40232.1| oligopeptide ABC transporter, ATP-binding protein [Bacillus cereus ATCC 10987] Length = 347 Score = 442 bits (1137), Expect = e-123, Method: Compositional matrix adjust. Identities = 213/323 (65%), Positives = 257/323 (79%), Gaps = 2/323 (0%) Query: 1 MERLLEVKDLAISFRTRGGEVQAIRGVSFHVNKGETLAIVGESGSGKSVTSQAVMKLVPQ 60 M+ LLEVKDL +SF T GEVQA+RGV+F + KGETLAIVGESGSGKSVTS+A+M L+P Sbjct: 1 MKTLLEVKDLQVSFDTHAGEVQAVRGVTFDLKKGETLAIVGESGSGKSVTSKALMGLIPN 60 Query: 61 PMGEYKRGQILFEGQDLIGKNEKQMQKIRGKEIGMIFQDPMTSLNPMMKVGKQITEVLFK 120 P G K G+I+FEG+DL EK+MQ++RGK+I MIFQDPMTSLNP M +G QI E L K Sbjct: 61 PPGRIKNGEIVFEGRDLTKLTEKEMQQVRGKDIAMIFQDPMTSLNPTMTIGNQIMEGLIK 120 Query: 121 HEKISKDAAYKRGIELLNLVGIPSPERRFQQYPHEFSGGMRQRVVIAMALAANPKLLIAD 180 H+ +SK A K +EL++LVGIP+PE R +QYPH+FSGGMRQRVVIAMALA NPKLLIAD Sbjct: 121 HQGMSKADARKVALELIDLVGIPNPEARLKQYPHQFSGGMRQRVVIAMALACNPKLLIAD 180 Query: 181 EPTTALDVTIQAQILDLMKDIQKKIDTAIIFITHDLGXXXXXXXXXXXXXXGQIVEMGTA 240 EPTTALDVTIQAQIL+LMKDIQ+K + AIIFITHDLG G++VE+GT Sbjct: 181 EPTTALDVTIQAQILELMKDIQQKTEAAIIFITHDLGVVANVADRVAVMYAGKVVEIGTV 240 Query: 241 EEIFYDPRHPYTWGLLASMPSLESKGSLLTAIPGTPPDLIKPPKGDAFALRSTYAMQIDM 300 +EIFY+P+HPYTWGL+ASMPSL+ L AIPGTPPDL+KPPKGDAFA R+ A++ID Sbjct: 241 DEIFYNPKHPYTWGLIASMPSLDGSEEELYAIPGTPPDLLKPPKGDAFAPRNPQALKIDF 300 Query: 301 EKEPPMYKVSDTHXXXXKSWLMH 323 E +PP++KVSDTH +WL+H Sbjct: 301 EMDPPLFKVSDTHYAA--TWLLH 321 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF Posted date: Mar 24, 2004 1:53 AM Number of letters in database: 757,237,578 Number of sequences in database: 2,715,099 Lambda K H 0.318 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 2715099 Number of Hits to DB: 478,537,703 Number of extensions: 18376201 Number of successful extensions: 110067 Number of sequences better than 1.0e-05: 15591 Number of HSP's gapped: 94001 Number of HSP's successfully gapped: 16350 Length of query: 358 Length of database: 757,237,578 Length adjustment: 127 Effective length of query: 231 Effective length of database: 412,420,005 Effective search space: 95269021155 Effective search space used: 95269021155 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)